Wall clock time and date at job start Fri Apr 10 2020 21:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47534 * 2 1 4 4 C 1.53001 * 109.47069 * 239.99805 * 2 1 3 5 5 N 1.46504 * 109.47136 * 185.00226 * 4 2 1 6 6 C 1.36940 * 120.00074 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99744 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99992 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99889 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47139 * 60.00259 * 10 8 6 12 12 H 1.48501 * 109.46980 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46999 * 299.99960 * 10 8 6 14 14 N 1.46500 * 109.46939 * 119.99920 * 2 1 3 15 15 C 1.46500 * 120.00180 * 60.00065 * 14 2 1 16 16 C 1.34773 * 120.00050 * 239.99646 * 14 2 1 17 17 O 1.21277 * 120.00143 * 0.02562 * 16 14 2 18 18 C 1.50705 * 120.00318 * 179.97438 * 16 14 2 19 19 N 1.46500 * 109.47383 * 180.02562 * 18 16 14 20 20 C 1.35306 * 125.86781 * 125.29463 * 19 18 16 21 21 C 1.35352 * 106.17827 * 180.18886 * 20 19 18 22 22 C 1.50697 * 126.75683 * 179.85285 * 21 20 19 23 23 C 1.53000 * 117.49504 * 16.09102 * 22 21 20 24 24 C 1.52997 * 60.00347 * 107.48912 * 23 22 21 25 25 N 1.33777 * 106.49092 * 359.59003 * 21 20 19 26 26 N 1.28628 * 108.88539 * 0.26502 * 25 21 20 27 27 H 1.08997 * 109.47045 * 60.00117 * 1 2 3 28 28 H 1.08996 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46870 * 300.00168 * 1 2 3 30 30 H 1.08997 * 109.47344 * 304.99789 * 4 2 1 31 31 H 1.08997 * 109.47125 * 65.00114 * 4 2 1 32 32 H 0.97001 * 119.99937 * 0.02562 * 5 4 2 33 33 H 0.97006 * 120.00209 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46988 * 270.00045 * 15 14 2 35 35 H 1.09008 * 109.46915 * 29.99750 * 15 14 2 36 36 H 1.08996 * 109.47285 * 149.99550 * 15 14 2 37 37 H 1.08999 * 109.46680 * 60.00031 * 18 16 14 38 38 H 1.09002 * 109.46985 * 300.00735 * 18 16 14 39 39 H 1.08009 * 126.91407 * 0.04258 * 20 19 18 40 40 H 1.08990 * 115.56356 * 230.40274 * 22 21 20 41 41 H 1.09002 * 117.49696 * 214.98125 * 23 22 21 42 42 H 1.09002 * 117.50343 * 0.02562 * 23 22 21 43 43 H 1.08999 * 117.49685 * 252.51237 * 24 23 22 44 44 H 1.08999 * 117.52022 * 107.47599 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1839 -1.4381 -2.2072 7 1 3.6469 -1.8425 -3.0524 8 6 5.5673 -1.5373 -2.1518 9 7 6.2218 -1.0439 -1.1219 10 14 6.5001 -2.3722 -3.5383 11 1 6.2427 -1.6527 -4.8116 12 1 7.9548 -2.3482 -3.2409 13 1 6.0442 -3.7799 -3.6642 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4281 16 6 2.7932 -0.0357 2.0833 17 8 3.0859 1.1255 1.8916 18 6 3.2950 -0.7458 3.3141 19 7 4.1086 0.1751 4.1118 20 6 3.9173 0.4744 5.4174 21 6 4.8850 1.3615 5.7467 22 6 5.0998 2.0034 7.0931 23 6 4.4018 1.3687 8.2976 24 6 5.9151 1.2226 8.1260 25 7 5.6170 1.5520 4.6432 26 7 5.1310 0.8349 3.6924 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6054 -1.7198 -1.2951 31 1 1.7516 -0.1584 -2.1369 32 1 3.9824 -0.4629 -0.4315 33 1 7.1886 -1.1129 -1.0834 34 1 0.7375 -2.1443 1.9994 35 1 1.5294 -2.5969 0.4708 36 1 2.4628 -2.5819 1.9864 37 1 3.9003 -1.6025 3.0178 38 1 2.4470 -1.0880 3.9073 39 1 3.1459 0.0856 6.0658 40 1 5.2036 3.0883 7.0857 41 1 4.0464 2.0362 9.0826 42 1 3.7876 0.4866 8.1163 43 1 6.2961 0.2448 7.8315 44 1 6.5556 1.7940 8.7978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698827053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:59:17 Heat of formation + Delta-G solvation = 118.408905 kcal Electronic energy + Delta-G solvation = -25595.747835 eV Core-core repulsion = 21973.629780 eV Total energy + Delta-G solvation = -3622.118055 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.12990 -39.87712 -37.44568 -36.55045 -34.38443 -33.98424 -32.04653 -30.60267 -30.16365 -28.41197 -26.80777 -25.64534 -24.07669 -23.12577 -22.65069 -22.11418 -20.95285 -20.32439 -18.91185 -17.64615 -17.29173 -17.06542 -16.15002 -15.81376 -15.65221 -15.17148 -14.72870 -14.65650 -14.46583 -13.75276 -13.54011 -13.44673 -13.18076 -12.66281 -12.51239 -12.34386 -12.23655 -12.16031 -11.94595 -11.75264 -11.52573 -11.39509 -11.13806 -10.83698 -10.81799 -10.76492 -10.54419 -10.39782 -10.11876 -10.07060 -9.68180 -9.48616 -8.93092 -8.85497 -8.44288 -6.89463 -5.69592 -3.01081 1.69947 2.25528 2.67117 2.67753 3.17029 3.45280 3.50003 3.52242 3.63289 4.15032 4.35712 4.48012 4.61599 4.69220 4.72592 4.78507 4.87731 5.11845 5.16032 5.19919 5.30535 5.32732 5.40672 5.47944 5.53152 5.61184 5.63651 5.76948 5.83327 5.89331 5.95516 6.01917 6.03230 6.12892 6.22943 6.29778 6.43523 6.58751 6.64870 6.86281 7.48507 7.71278 8.27160 8.46332 8.76049 9.57725 10.15124 10.50149 11.51402 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.003740 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.129435 B = 7485.293852 C = 8911.732773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.101 0.899 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.248 4.248 7 H 0.068 0.932 8 C -0.009 4.009 9 N -0.923 5.923 10 Si 0.905 3.095 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.287 1.287 14 N -0.592 5.592 15 C 0.075 3.925 16 C 0.507 3.493 17 O -0.508 6.508 18 C 0.098 3.902 19 N -0.278 5.278 20 C -0.058 4.058 21 C 0.005 3.995 22 C -0.067 4.067 23 C -0.172 4.172 24 C -0.166 4.166 25 N -0.269 5.269 26 N -0.030 5.030 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.029 0.971 32 H 0.387 0.613 33 H 0.257 0.743 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.186 0.814 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.499 -1.540 18.142 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.119 0.881 4 C 0.015 3.985 5 N -0.373 5.373 6 C -0.379 4.379 7 H 0.086 0.914 8 C -0.206 4.206 9 N -0.571 5.571 10 Si 0.736 3.264 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.214 1.214 14 N -0.326 5.326 15 C -0.068 4.068 16 C 0.291 3.709 17 O -0.381 6.381 18 C -0.027 4.027 19 N -0.071 5.071 20 C -0.207 4.207 21 C -0.133 4.133 22 C -0.087 4.087 23 C -0.209 4.209 24 C -0.204 4.204 25 N -0.135 5.135 26 N -0.010 5.010 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.221 0.779 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.203 0.797 40 H 0.138 0.862 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.387 -0.711 16.640 20.175 hybrid contribution -0.108 -0.908 0.150 0.926 sum -11.495 -1.618 16.790 20.412 Atomic orbital electron populations 1.22046 0.94934 1.02107 1.02140 1.21446 0.93298 0.98585 0.84251 0.88112 1.20997 0.87304 0.96689 0.93492 1.42300 0.99542 1.70244 1.25220 1.19114 0.89418 1.30078 0.99284 0.91402 1.24771 0.96466 1.01463 0.97946 1.69679 1.07356 1.50090 1.29939 0.86314 0.79151 0.79122 0.81800 1.21302 1.21672 1.21392 1.47582 1.50373 1.12253 1.22394 1.21807 0.99767 0.81776 1.03438 1.20009 0.79164 0.87414 0.84265 1.90822 1.55410 1.16409 1.75496 1.21949 0.96148 0.91795 0.92802 1.46815 1.21380 1.30821 1.08113 1.23148 1.05484 1.05418 0.86679 1.20962 0.96083 1.00428 0.95783 1.19959 1.06005 0.98432 0.84287 1.23002 0.95567 1.03074 0.99294 1.22994 0.93839 1.02121 1.01420 1.75147 1.23438 1.17723 0.97229 1.78699 0.97983 1.04233 1.20086 0.91259 0.92300 0.92714 0.96161 0.95357 0.77901 0.93350 0.92849 0.89695 0.91378 0.85020 0.85273 0.79738 0.86151 0.88118 0.88683 0.88662 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.19 37.16 0.34 -1.48 16 2 C 0.13 2.07 2.80 -67.93 -0.19 1.88 16 3 H 0.10 1.95 6.90 -51.93 -0.36 1.59 16 4 C 0.14 2.82 5.50 -4.04 -0.02 2.79 16 5 N -0.73 -18.68 5.43 -59.91 -0.33 -19.01 16 6 C -0.25 -7.00 9.99 -15.06 -0.15 -7.15 16 7 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 8 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 9 N -0.92 -28.96 13.06 55.49 0.72 -28.23 16 10 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 N -0.59 -8.88 2.24 -173.93 -0.39 -9.27 16 15 C 0.08 0.82 9.30 59.85 0.56 1.38 16 16 C 0.51 8.57 7.39 -10.98 -0.08 8.49 16 17 O -0.51 -11.13 15.00 5.56 0.08 -11.05 16 18 C 0.10 1.24 5.49 -5.19 -0.03 1.21 16 19 N -0.28 -4.36 3.20 -62.44 -0.20 -4.56 16 20 C -0.06 -0.72 10.89 -17.05 -0.19 -0.91 16 21 C 0.00 0.07 6.88 -82.78 -0.57 -0.50 16 22 C -0.07 -0.72 6.33 -91.77 -0.58 -1.30 16 23 C -0.17 -1.27 10.02 -26.73 -0.27 -1.54 16 24 C -0.17 -1.46 10.23 -26.73 -0.27 -1.73 16 25 N -0.27 -5.20 12.41 33.29 0.41 -4.78 16 26 N -0.03 -0.62 12.13 60.35 0.73 0.11 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.02 0.38 6.88 -51.93 -0.36 0.02 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.39 10.86 7.06 -40.82 -0.29 10.57 16 33 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 1.03 6.53 -51.92 -0.34 0.69 16 36 H 0.07 0.65 6.44 -51.93 -0.33 0.32 16 37 H 0.13 1.57 7.40 -51.93 -0.38 1.19 16 38 H 0.13 0.91 8.03 -51.93 -0.42 0.50 16 39 H 0.19 1.40 7.45 -52.48 -0.39 1.01 16 40 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.61 7.23 -51.93 -0.38 0.23 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -38.78 366.74 -6.58 -45.36 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.57 Total: 7.35 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.55 Total: 0.77 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: 0.95 Total: -65.74 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.78 -6.58 -45.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698827053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.771 kcal (2) G-P(sol) polarization free energy of solvation -38.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds