Wall clock time and date at job start Fri Apr 10 2020 21:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47534 * 2 1 4 4 C 1.53001 * 109.47069 * 239.99805 * 2 1 3 5 5 N 1.46504 * 109.47136 * 185.00226 * 4 2 1 6 6 C 1.36940 * 120.00074 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99744 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99962 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99992 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99889 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47139 * 60.00259 * 10 8 6 12 12 H 1.48501 * 109.46980 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46999 * 299.99960 * 10 8 6 14 14 N 1.46500 * 109.46939 * 119.99920 * 2 1 3 15 15 C 1.46500 * 120.00180 * 60.00065 * 14 2 1 16 16 C 1.34773 * 120.00050 * 239.99646 * 14 2 1 17 17 O 1.21277 * 120.00143 * 0.02562 * 16 14 2 18 18 C 1.50705 * 120.00318 * 179.97438 * 16 14 2 19 19 N 1.46500 * 109.47383 * 180.02562 * 18 16 14 20 20 C 1.35306 * 125.86781 * 125.29463 * 19 18 16 21 21 C 1.35352 * 106.17827 * 180.18886 * 20 19 18 22 22 C 1.50697 * 126.75683 * 179.85285 * 21 20 19 23 23 C 1.53000 * 117.49504 * 16.09102 * 22 21 20 24 24 C 1.52997 * 60.00347 * 107.48912 * 23 22 21 25 25 N 1.33777 * 106.49092 * 359.59003 * 21 20 19 26 26 N 1.28628 * 108.88539 * 0.26502 * 25 21 20 27 27 H 1.08997 * 109.47045 * 60.00117 * 1 2 3 28 28 H 1.08996 * 109.47159 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46870 * 300.00168 * 1 2 3 30 30 H 1.08997 * 109.47344 * 304.99789 * 4 2 1 31 31 H 1.08997 * 109.47125 * 65.00114 * 4 2 1 32 32 H 0.97001 * 119.99937 * 0.02562 * 5 4 2 33 33 H 0.97006 * 120.00209 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.46988 * 270.00045 * 15 14 2 35 35 H 1.09008 * 109.46915 * 29.99750 * 15 14 2 36 36 H 1.08996 * 109.47285 * 149.99550 * 15 14 2 37 37 H 1.08999 * 109.46680 * 60.00031 * 18 16 14 38 38 H 1.09002 * 109.46985 * 300.00735 * 18 16 14 39 39 H 1.08009 * 126.91407 * 0.04258 * 20 19 18 40 40 H 1.08990 * 115.56356 * 230.40274 * 22 21 20 41 41 H 1.09002 * 117.49696 * 214.98125 * 23 22 21 42 42 H 1.09002 * 117.50343 * 0.02562 * 23 22 21 43 43 H 1.08999 * 117.49685 * 252.51237 * 24 23 22 44 44 H 1.08999 * 117.52022 * 107.47599 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1839 -1.4381 -2.2072 7 1 3.6469 -1.8425 -3.0524 8 6 5.5673 -1.5373 -2.1518 9 7 6.2218 -1.0439 -1.1219 10 14 6.5001 -2.3722 -3.5383 11 1 6.2427 -1.6527 -4.8116 12 1 7.9548 -2.3482 -3.2409 13 1 6.0442 -3.7799 -3.6642 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4281 16 6 2.7932 -0.0357 2.0833 17 8 3.0859 1.1255 1.8916 18 6 3.2950 -0.7458 3.3141 19 7 4.1086 0.1751 4.1118 20 6 3.9173 0.4744 5.4174 21 6 4.8850 1.3615 5.7467 22 6 5.0998 2.0034 7.0931 23 6 4.4018 1.3687 8.2976 24 6 5.9151 1.2226 8.1260 25 7 5.6170 1.5520 4.6432 26 7 5.1310 0.8349 3.6924 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6054 -1.7198 -1.2951 31 1 1.7516 -0.1584 -2.1369 32 1 3.9824 -0.4629 -0.4315 33 1 7.1886 -1.1129 -1.0834 34 1 0.7375 -2.1443 1.9994 35 1 1.5294 -2.5969 0.4708 36 1 2.4628 -2.5819 1.9864 37 1 3.9003 -1.6025 3.0178 38 1 2.4470 -1.0880 3.9073 39 1 3.1459 0.0856 6.0658 40 1 5.2036 3.0883 7.0857 41 1 4.0464 2.0362 9.0826 42 1 3.7876 0.4866 8.1163 43 1 6.2961 0.2448 7.8315 44 1 6.5556 1.7940 8.7978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698827053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:59:16 Heat of formation + Delta-G solvation = 89.400520 kcal Electronic energy + Delta-G solvation = -25597.005733 eV Core-core repulsion = 21973.629780 eV Total energy + Delta-G solvation = -3623.375953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.27156 -41.13133 -38.24452 -37.89381 -35.89317 -35.46741 -33.61688 -31.93884 -31.66723 -29.49040 -27.78808 -27.39558 -25.00492 -24.63894 -23.94858 -23.09070 -22.10347 -21.37367 -20.15020 -19.13010 -18.77017 -18.36243 -17.32691 -16.98836 -16.75297 -16.49861 -16.26672 -15.66690 -15.45534 -15.26393 -15.23873 -14.71553 -14.35641 -13.94951 -13.73285 -13.61168 -13.32751 -13.26098 -13.10943 -12.93534 -12.76079 -12.53805 -12.47704 -12.26832 -12.19919 -12.09137 -11.85714 -11.78761 -11.74574 -11.34626 -11.13335 -10.97144 -10.73103 -9.96259 -9.63744 -9.01745 -7.93529 -5.25022 0.61550 1.25989 1.43164 1.46453 1.47364 1.53048 1.53899 2.04902 2.54039 2.91417 3.20205 3.38473 3.39905 3.68296 3.83284 3.90035 3.93582 4.00858 4.07887 4.08847 4.26568 4.31344 4.31923 4.43111 4.45778 4.75349 4.77294 4.82709 4.84263 4.89063 4.93288 5.00447 5.04617 5.13221 5.22827 5.24992 5.29506 5.33419 5.45428 5.52433 5.64165 6.23703 6.32890 7.06774 7.30912 7.57314 8.08086 8.30180 9.28057 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.003740 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.129435 B = 7485.293852 C = 8911.732773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.131 3.869 3 H 0.058 0.942 4 C 0.141 3.859 5 N -0.743 5.743 6 C -0.246 4.246 7 H 0.080 0.920 8 C -0.077 4.077 9 N -0.967 5.967 10 Si 0.974 3.026 11 H -0.280 1.280 12 H -0.301 1.301 13 H -0.270 1.270 14 N -0.590 5.590 15 C 0.066 3.934 16 C 0.495 3.505 17 O -0.573 6.573 18 C 0.099 3.901 19 N -0.278 5.278 20 C -0.032 4.032 21 C -0.010 4.010 22 C -0.098 4.098 23 C -0.137 4.137 24 C -0.169 4.169 25 N -0.316 5.316 26 N -0.108 5.108 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.025 0.975 32 H 0.370 0.630 33 H 0.247 0.753 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.197 0.803 39 H 0.244 0.756 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.765 -4.003 19.981 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.028 3.972 3 H 0.077 0.923 4 C 0.014 3.986 5 N -0.386 5.386 6 C -0.377 4.377 7 H 0.097 0.903 8 C -0.269 4.269 9 N -0.617 5.617 10 Si 0.803 3.197 11 H -0.207 1.207 12 H -0.227 1.227 13 H -0.196 1.196 14 N -0.322 5.322 15 C -0.075 4.075 16 C 0.281 3.719 17 O -0.452 6.452 18 C -0.024 4.024 19 N -0.071 5.071 20 C -0.183 4.183 21 C -0.149 4.149 22 C -0.118 4.118 23 C -0.175 4.175 24 C -0.207 4.207 25 N -0.182 5.182 26 N -0.087 5.087 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.202 0.798 33 H 0.056 0.944 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.154 0.846 38 H 0.214 0.786 39 H 0.260 0.740 40 H 0.132 0.868 41 H 0.141 0.859 42 H 0.132 0.868 43 H 0.103 0.897 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.721 -3.230 18.428 23.806 hybrid contribution 0.786 -0.143 -0.398 0.892 sum -13.935 -3.372 18.030 23.035 Atomic orbital electron populations 1.21941 0.90729 1.04002 1.03058 1.21257 0.96275 0.96024 0.83687 0.92323 1.21235 0.84077 0.98107 0.95230 1.42541 1.02053 1.69864 1.24119 1.19592 0.89873 1.28569 0.99713 0.90259 1.25632 0.97646 1.03099 1.00518 1.69894 1.06822 1.52589 1.32405 0.85205 0.76948 0.78790 0.78740 1.20662 1.22747 1.19571 1.47724 1.49495 1.13769 1.21220 1.22158 1.02565 0.78959 1.03822 1.20799 0.78472 0.86976 0.85627 1.90796 1.57724 1.19437 1.77210 1.22313 0.97793 0.90379 0.91952 1.47070 1.20460 1.30247 1.09367 1.24031 1.05154 1.03379 0.85723 1.21708 0.96050 1.01053 0.96075 1.20060 1.09762 0.98247 0.83719 1.23181 0.94357 1.03113 0.96819 1.23055 0.95621 1.01354 1.00634 1.75038 1.25410 1.18784 0.98955 1.78633 1.01084 1.07232 1.21723 0.90604 0.89765 0.91636 0.93790 0.95674 0.79811 0.94401 0.88027 0.90871 0.90013 0.84573 0.78600 0.73957 0.86814 0.85924 0.86783 0.89658 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.19 71.98 0.66 -2.26 16 2 C 0.13 4.26 2.80 44.99 0.13 4.38 16 3 H 0.06 2.41 6.90 -2.39 -0.02 2.39 16 4 C 0.14 5.46 5.50 86.38 0.48 5.93 16 5 N -0.74 -38.94 5.43 -343.45 -1.87 -40.80 16 6 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 7 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 8 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 9 N -0.97 -63.14 13.06 21.65 0.28 -62.86 16 10 Si 0.97 47.66 29.55 68.60 2.03 49.69 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 N -0.59 -16.99 2.24 -822.59 -1.85 -18.83 16 15 C 0.07 1.21 9.30 127.77 1.19 2.40 16 16 C 0.49 16.79 7.39 87.66 0.65 17.44 16 17 O -0.57 -26.69 15.00 -3.02 -0.05 -26.73 16 18 C 0.10 2.32 5.49 85.63 0.47 2.79 16 19 N -0.28 -8.64 3.20 -351.46 -1.12 -9.76 16 20 C -0.03 -0.75 10.89 83.49 0.91 0.16 16 21 C -0.01 -0.30 6.88 41.59 0.29 -0.01 16 22 C -0.10 -2.02 6.33 -11.54 -0.07 -2.10 16 23 C -0.14 -1.54 10.02 30.59 0.31 -1.23 16 24 C -0.17 -2.71 10.23 30.60 0.31 -2.39 16 25 N -0.32 -13.06 12.41 -48.60 -0.60 -13.66 16 26 N -0.11 -4.74 12.13 37.02 0.45 -4.29 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.37 7.67 -2.39 -0.02 1.35 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.04 1.54 6.88 -2.39 -0.02 1.52 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.37 21.76 7.06 -92.71 -0.65 21.11 16 33 H 0.25 15.90 8.31 -92.70 -0.77 15.13 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.54 6.53 -2.38 -0.02 1.53 16 36 H 0.08 1.29 6.44 -2.39 -0.02 1.27 16 37 H 0.14 3.08 7.40 -2.39 -0.02 3.06 16 38 H 0.20 1.73 8.03 -2.39 -0.02 1.71 16 39 H 0.24 2.30 7.45 -2.91 -0.02 2.28 16 40 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.11 0.85 7.23 -2.39 -0.02 0.84 16 43 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 44 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -94.96 366.74 4.25 -90.71 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.36 Total: 28.70 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 6.62 Total: 7.85 kcal Atomic # 7 Polarization: -145.50 SS G_CDS: -4.71 Total: -150.21 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -94.96 4.25 -90.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698827053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.108 kcal (2) G-P(sol) polarization free energy of solvation -94.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds