Wall clock time and date at job start Fri Apr 10 2020 22:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47237 * 2 1 4 4 C 1.34810 * 126.59585 * 124.99803 * 3 2 1 5 5 C 1.36601 * 106.83946 * 180.02562 * 4 3 2 6 6 C 1.47524 * 125.77075 * 179.97438 * 5 4 3 7 7 O 1.21601 * 119.99705 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00026 * 179.97438 * 6 5 4 9 9 C 1.47019 * 125.64808 * 359.97098 * 8 6 5 10 10 C 1.54317 * 107.26957 * 181.08126 * 9 8 6 11 11 C 1.55444 * 102.97143 * 22.19782 * 10 9 8 12 12 H 1.08995 * 111.01969 * 82.52226 * 11 10 9 13 13 C 1.52996 * 111.11755 * 206.46557 * 11 10 9 14 14 N 1.46501 * 109.47192 * 178.55193 * 13 11 10 15 15 C 1.46496 * 120.00056 * 90.00241 * 14 13 11 16 16 C 1.36932 * 120.00056 * 269.99518 * 14 13 11 17 17 H 1.08002 * 120.00341 * 141.73945 * 16 14 13 18 18 C 1.38815 * 120.00316 * 321.74105 * 16 14 13 19 19 N 1.31621 * 120.00489 * 157.43675 * 18 16 14 20 20 Si 1.86806 * 119.99746 * 337.44506 * 18 16 14 21 21 H 1.48499 * 109.47113 * 95.66814 * 20 18 16 22 22 H 1.48499 * 109.46632 * 215.66649 * 20 18 16 23 23 H 1.48503 * 109.47062 * 335.66287 * 20 18 16 24 24 C 1.47420 * 125.64720 * 179.97438 * 8 6 5 25 25 N 1.34396 * 108.45669 * 0.23653 * 5 4 3 26 26 N 1.28757 * 109.52523 * 359.59314 * 25 5 4 27 27 H 1.09002 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47891 * 300.00052 * 1 2 3 29 29 H 1.09002 * 109.47289 * 60.00398 * 1 2 3 30 30 H 1.08997 * 109.47891 * 239.99948 * 2 1 3 31 31 H 1.09002 * 109.47289 * 119.99602 * 2 1 3 32 32 H 1.08001 * 126.58152 * 0.02562 * 4 3 2 33 33 H 1.09007 * 109.88365 * 300.50040 * 9 8 6 34 34 H 1.09005 * 109.87884 * 61.66264 * 9 8 6 35 35 H 1.09004 * 110.71810 * 140.55937 * 10 9 8 36 36 H 1.08998 * 110.72533 * 263.64869 * 10 9 8 37 37 H 1.08999 * 109.46975 * 298.55013 * 13 11 10 38 38 H 1.09003 * 109.47662 * 58.54904 * 13 11 10 39 39 H 1.08998 * 109.47548 * 85.64941 * 15 14 13 40 40 H 1.09005 * 109.47084 * 205.66041 * 15 14 13 41 41 H 1.09006 * 109.46576 * 325.65090 * 15 14 13 42 42 H 0.96993 * 120.00047 * 179.97438 * 19 18 16 43 43 H 1.08998 * 110.36391 * 274.68673 * 24 8 6 44 44 H 1.09003 * 110.36844 * 36.90028 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8715 1.9320 0.8866 5 6 3.0499 3.2325 0.5087 6 6 3.9063 4.2197 1.1932 7 8 4.5297 3.8986 2.1866 8 7 3.9976 5.4774 0.7174 9 6 3.3021 5.9973 -0.4690 10 6 3.7297 7.4700 -0.6419 11 6 5.0797 7.5339 0.1260 12 1 5.9008 7.1791 -0.4968 13 6 5.3553 8.9485 0.6395 14 7 6.6162 8.9602 1.3854 15 6 7.8765 9.2313 0.6895 16 6 6.6167 8.7178 2.7331 17 1 7.4121 8.1377 3.1772 18 6 5.5949 9.2177 3.5286 19 7 5.3280 8.6547 4.6881 20 14 4.5983 10.6894 2.9536 21 1 3.3546 10.2175 2.2934 22 1 4.2479 11.5367 4.1216 23 1 5.4004 11.4837 1.9886 24 6 4.8115 6.5595 1.3003 25 7 2.3089 3.4622 -0.5887 26 7 1.6878 2.3847 -0.9219 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3266 1.4396 1.7333 33 1 3.5895 5.4220 -1.3491 34 1 2.2236 5.9392 -0.3215 35 1 3.8740 7.7084 -1.6957 36 1 2.9960 8.1399 -0.1936 37 1 5.4264 9.6341 -0.2049 38 1 4.5426 9.2621 1.2947 39 1 8.0344 10.3082 0.6300 40 1 8.6999 8.7729 1.2372 41 1 7.8328 8.8143 -0.3167 42 1 4.6142 9.0043 5.2440 43 1 4.2598 7.0638 2.0936 44 1 5.7507 6.1624 1.6857 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753360479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:39 Heat of formation + Delta-G solvation = 71.422239 kcal Electronic energy + Delta-G solvation = -25779.056199 eV Core-core repulsion = 22154.900650 eV Total energy + Delta-G solvation = -3624.155550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 307.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.26235 -40.87838 -38.93972 -37.17226 -36.35634 -33.87983 -32.99875 -32.34145 -31.21143 -30.17430 -28.02745 -27.56328 -25.52473 -25.09458 -23.40948 -22.87417 -22.56444 -21.41371 -20.55802 -18.80141 -18.69093 -17.46607 -17.35818 -17.20237 -16.90833 -16.45212 -15.74143 -15.67265 -15.54214 -15.14568 -14.95246 -14.67454 -14.40822 -14.21964 -13.85745 -13.76019 -13.56544 -13.36204 -13.27351 -13.16999 -12.99683 -12.66482 -12.58886 -12.46040 -12.11429 -12.07795 -11.87914 -11.75999 -11.57042 -11.34440 -11.30215 -11.23307 -10.59108 -10.40276 -9.64643 -8.70314 -8.14528 -5.53056 0.11479 0.59186 1.09897 1.31216 1.42680 1.53975 1.94769 2.17298 2.44994 3.03168 3.12761 3.34812 3.42909 3.71465 3.75401 3.88791 3.94967 3.99669 4.04455 4.26891 4.31054 4.37875 4.47816 4.57778 4.66373 4.73417 4.74539 4.79426 4.83341 4.84190 4.93257 5.00214 5.09268 5.13030 5.17412 5.22344 5.22780 5.32523 5.46754 5.48272 5.98278 6.21727 6.47360 6.80870 7.04131 7.06248 7.68215 8.09535 9.05002 Molecular weight = 307.17amu Principal moments of inertia in cm(-1) A = 0.023298 B = 0.003442 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.506621 B = 8132.816957 C = 8394.359275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.347 5.347 4 C 0.109 3.891 5 C -0.121 4.121 6 C 0.602 3.398 7 O -0.582 6.582 8 N -0.609 5.609 9 C 0.116 3.884 10 C -0.122 4.122 11 C -0.103 4.103 12 H 0.088 0.912 13 C 0.143 3.857 14 N -0.627 5.627 15 C 0.123 3.877 16 C -0.251 4.251 17 H 0.032 0.968 18 C -0.016 4.016 19 N -0.946 5.946 20 Si 0.937 3.063 21 H -0.270 1.270 22 H -0.312 1.312 23 H -0.255 1.255 24 C 0.143 3.857 25 N -0.216 5.216 26 N -0.083 5.083 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.017 0.983 40 H 0.035 0.965 41 H 0.061 0.939 42 H 0.260 0.740 43 H 0.036 0.964 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 -16.391 -15.726 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.132 5.132 4 C -0.049 4.049 5 C -0.260 4.260 6 C 0.390 3.610 7 O -0.462 6.462 8 N -0.341 5.341 9 C -0.006 4.006 10 C -0.160 4.160 11 C -0.124 4.124 12 H 0.106 0.894 13 C 0.018 3.982 14 N -0.351 5.351 15 C -0.021 4.021 16 C -0.381 4.381 17 H 0.050 0.950 18 C -0.213 4.213 19 N -0.590 5.590 20 Si 0.765 3.235 21 H -0.197 1.197 22 H -0.241 1.241 23 H -0.178 1.178 24 C 0.021 3.979 25 N -0.090 5.090 26 N -0.063 5.063 27 H 0.129 0.871 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.249 0.751 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.035 0.965 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.671 -16.333 -16.335 25.445 hybrid contribution 0.213 0.390 1.687 1.744 sum -10.458 -15.942 -14.648 24.044 Atomic orbital electron populations 1.22083 0.92519 1.05018 1.02630 1.22601 0.97044 0.73827 1.07757 1.50935 1.30464 1.13292 1.18510 1.23753 0.92171 0.92904 0.96066 1.21197 1.08753 0.95659 1.00409 1.16901 0.80578 0.80744 0.82742 1.90805 1.48417 1.79440 1.27515 1.48575 1.46290 1.09528 1.29691 1.22155 0.96734 0.94850 0.86870 1.22833 0.95740 0.94637 1.02786 1.22923 0.98161 0.96505 0.94855 0.89358 1.21254 0.87852 0.94160 0.94949 1.44218 1.03424 1.83162 1.04331 1.21182 0.87146 0.97744 0.96019 1.18519 1.09748 1.26448 0.83418 0.94984 1.26041 0.99988 0.99971 0.95283 1.70042 1.32559 1.41407 1.15024 0.85953 0.79176 0.81544 0.76788 1.19698 1.24123 1.17846 1.21867 0.93385 0.86612 0.96049 1.74685 1.05056 1.18795 1.10420 1.81829 1.20846 0.90721 1.12945 0.87089 0.92864 0.92392 0.86429 0.84326 0.75110 0.89788 0.90987 0.86308 0.90787 0.89961 0.94816 0.96461 0.94647 0.92060 0.93131 0.94510 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 10.12 71.98 0.73 -0.40 16 2 C 0.11 0.70 7.26 86.38 0.63 1.33 16 3 N -0.35 -6.14 3.69 -347.10 -1.28 -7.42 16 4 C 0.11 2.36 11.27 83.85 0.95 3.30 16 5 C -0.12 -3.69 6.85 40.82 0.28 -3.42 16 6 C 0.60 23.82 7.85 86.69 0.68 24.50 16 7 O -0.58 -27.30 17.12 -4.03 -0.07 -27.37 16 8 N -0.61 -23.65 3.33 -815.51 -2.71 -26.36 16 9 C 0.12 3.46 5.51 86.73 0.48 3.94 16 10 C -0.12 -3.33 6.43 31.88 0.20 -3.12 16 11 C -0.10 -3.67 3.31 -9.29 -0.03 -3.70 16 12 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 13 C 0.14 5.71 4.08 86.38 0.35 6.06 16 14 N -0.63 -29.21 2.41 -726.94 -1.75 -30.96 16 15 C 0.12 4.70 10.70 127.77 1.37 6.06 16 16 C -0.25 -14.42 8.94 84.03 0.75 -13.67 16 17 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 18 C -0.02 -0.96 5.29 84.86 0.45 -0.51 16 19 N -0.95 -60.91 13.97 21.65 0.30 -60.61 16 20 Si 0.94 46.32 25.09 68.60 1.72 48.04 16 21 H -0.27 -12.56 6.68 99.48 0.66 -11.90 16 22 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 23 H -0.25 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.14 6.42 5.35 86.86 0.46 6.89 16 25 N -0.22 -6.30 9.78 -49.99 -0.49 -6.79 16 26 N -0.08 -2.06 13.65 37.02 0.51 -1.55 16 27 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.14 0.07 8.08 -2.39 -0.02 0.05 16 32 H 0.23 3.51 8.06 -2.91 -0.02 3.48 16 33 H 0.08 2.29 7.63 -2.38 -0.02 2.27 16 34 H 0.07 2.11 7.73 -2.38 -0.02 2.10 16 35 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16 37 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 38 H 0.03 1.51 3.34 -2.39 -0.01 1.50 16 39 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.03 1.39 8.00 -2.38 -0.02 1.37 16 41 H 0.06 1.90 8.10 -2.38 -0.02 1.89 16 42 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 43 H 0.04 1.94 8.00 -2.39 -0.02 1.92 16 44 H 0.04 2.24 8.03 -2.39 -0.02 2.23 16 Total: -1.00 -82.16 359.34 4.47 -77.69 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.95 Total: 8.07 kcal Atomic # 6 Polarization: 19.97 SS G_CDS: 7.30 Total: 27.27 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -5.43 Total: -133.70 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.07 Total: -27.37 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.72 Total: 48.04 kcal Total: -82.16 4.47 -77.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753360479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.111 kcal (2) G-P(sol) polarization free energy of solvation -82.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds