Wall clock time and date at job start Fri Apr 10 2020 22:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35986 * 117.00213 * 2 1 4 4 C 1.38720 * 119.99969 * 0.02562 * 3 2 1 5 5 C 1.38106 * 120.00095 * 179.97438 * 4 3 2 6 6 C 1.38724 * 119.99842 * 0.02562 * 5 4 3 7 7 O 1.35980 * 119.99775 * 180.02562 * 6 5 4 8 8 C 1.38672 * 120.00067 * 0.02562 * 6 5 4 9 9 C 1.50698 * 119.99906 * 179.97438 * 8 6 5 10 10 N 1.46903 * 109.46861 * 283.35941 * 9 8 6 11 11 C 1.46902 * 110.99707 * 164.86814 * 10 9 8 12 12 C 1.50703 * 109.47260 * 190.00644 * 11 10 9 13 13 H 1.08004 * 119.99848 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00281 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99816 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00000 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47203 * 59.99597 * 16 14 12 18 18 H 1.48501 * 109.47163 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46993 * 299.99307 * 16 14 12 20 20 C 1.46892 * 111.00615 * 288.82287 * 10 9 8 21 21 C 1.52997 * 109.47099 * 294.26465 * 20 10 9 22 22 C 1.53011 * 109.47269 * 178.00028 * 21 20 10 23 23 C 1.53001 * 109.46461 * 64.99915 * 22 21 20 24 24 C 1.52995 * 109.47140 * 184.99966 * 22 21 20 25 25 C 1.38156 * 120.00172 * 0.23374 * 8 6 5 26 26 H 1.09004 * 109.47285 * 59.99840 * 1 2 3 27 27 H 1.08993 * 109.47592 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47430 * 300.00210 * 1 2 3 29 29 H 1.07998 * 119.99597 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.99931 * 179.97438 * 5 4 3 31 31 H 0.96695 * 114.00051 * 270.01765 * 7 6 5 32 32 H 1.09003 * 109.46981 * 163.36628 * 9 8 6 33 33 H 1.08994 * 109.47438 * 43.36113 * 9 8 6 34 34 H 1.09000 * 109.47400 * 310.00251 * 11 10 9 35 35 H 1.08999 * 109.47252 * 70.00294 * 11 10 9 36 36 H 0.96999 * 119.99644 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47306 * 54.26323 * 20 10 9 38 38 H 1.09000 * 109.47564 * 174.26187 * 20 10 9 39 39 H 1.08998 * 109.47315 * 297.99761 * 21 20 10 40 40 H 1.08996 * 109.47461 * 58.00403 * 21 20 10 41 41 H 1.08996 * 109.46694 * 304.99902 * 22 21 20 42 42 H 1.09004 * 109.46362 * 179.97438 * 23 22 21 43 43 H 1.08993 * 109.47430 * 299.99909 * 23 22 21 44 44 H 1.09001 * 109.47292 * 60.00395 * 23 22 21 45 45 H 1.08997 * 109.47485 * 60.00131 * 24 22 21 46 46 H 1.09003 * 109.47169 * 180.02562 * 24 22 21 47 47 H 1.09001 * 109.47309 * 300.00032 * 24 22 21 48 48 H 1.07995 * 119.99965 * 179.72186 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6056 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8897 0.0016 8 6 4.0585 2.5151 -0.0011 9 6 5.5634 2.5939 -0.0022 10 7 6.0345 2.9403 -1.3499 11 6 7.4373 3.3753 -1.3215 12 6 7.8118 3.9517 -2.6626 13 1 7.0809 3.9906 -3.4568 14 6 9.0877 4.4285 -2.8762 15 7 9.9779 4.3807 -1.9092 16 14 9.5521 5.1422 -4.5388 17 1 8.6794 6.3056 -4.8392 18 1 10.9701 5.5821 -4.5101 19 1 9.3757 4.1069 -5.5886 20 6 5.8507 1.8159 -2.2771 21 6 6.7536 0.6548 -1.8559 22 6 6.5256 -0.5340 -2.7919 23 6 6.9763 -0.1632 -4.2062 24 6 7.3344 -1.7349 -2.2973 25 6 3.4312 1.2841 -0.0070 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2124 2.3185 0.0005 30 1 1.3297 4.5113 0.0011 31 1 4.0985 5.2412 -0.8815 32 1 5.9780 1.6294 0.2908 33 1 5.8877 3.3584 0.7037 34 1 7.5666 4.1351 -0.5507 35 1 8.0781 2.5215 -1.1012 36 1 10.8757 4.7157 -2.0596 37 1 4.8098 1.4932 -2.2551 38 1 6.1119 2.1314 -3.2872 39 1 7.7965 0.9666 -1.9121 40 1 6.5163 0.3625 -0.8331 41 1 5.4661 -0.7894 -2.8033 42 1 6.8143 -1.0102 -4.8729 43 1 6.4001 0.6923 -4.5585 44 1 8.0359 0.0922 -4.1947 45 1 7.0134 -1.9991 -1.2897 46 1 7.1724 -2.5817 -2.9643 47 1 8.3940 -1.4795 -2.2858 48 1 4.0194 0.3784 -0.0128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180059310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:42 Heat of formation + Delta-G solvation = -66.083231 kcal Electronic energy + Delta-G solvation = -26441.986982 eV Core-core repulsion = 22883.116340 eV Total energy + Delta-G solvation = -3558.870642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.25240 -38.56452 -37.49661 -35.55447 -34.97870 -32.68050 -31.31433 -29.51030 -28.34936 -27.12485 -26.94196 -26.72567 -24.59691 -23.17776 -22.41987 -21.17301 -20.07073 -19.11462 -17.84388 -17.54889 -16.49223 -16.19450 -15.80456 -15.22006 -15.07411 -14.76621 -14.57901 -14.16241 -14.06578 -13.80341 -13.51342 -13.11421 -12.90408 -12.69302 -12.44500 -12.32489 -12.20774 -11.89770 -11.72572 -11.51805 -11.32752 -11.12109 -11.06977 -10.81852 -10.73372 -10.64890 -10.46735 -10.42755 -10.20441 -10.06684 -9.78837 -9.65517 -9.19833 -8.72491 -8.39849 -7.84189 -7.15249 -6.00053 -4.00747 1.41164 1.50004 3.24645 3.33883 3.38596 3.40854 3.75009 4.44586 4.66211 4.80633 4.91549 4.99820 5.02098 5.10684 5.24892 5.27706 5.30925 5.31787 5.36114 5.41341 5.55745 5.72531 5.83642 5.92856 5.96347 6.02235 6.12174 6.12889 6.18960 6.21279 6.23450 6.32608 6.37802 6.41170 6.55442 6.59553 6.62514 6.72973 6.82121 6.90056 7.01570 7.35751 7.39295 7.45628 7.81829 8.12231 8.13613 8.23854 8.56924 9.06098 9.62983 11.10614 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.004557 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.092389 B = 6142.583089 C = 7632.566452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.110 3.890 4 C -0.200 4.200 5 C -0.114 4.114 6 C 0.097 3.903 7 O -0.492 6.492 8 C -0.048 4.048 9 C 0.088 3.912 10 N -0.527 5.527 11 C 0.190 3.810 12 C -0.501 4.501 13 H 0.060 0.940 14 C 0.057 3.943 15 N -0.898 5.898 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.065 3.935 21 C -0.151 4.151 22 C -0.089 4.089 23 C -0.145 4.145 24 C -0.145 4.145 25 C -0.131 4.131 26 H 0.053 0.947 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.396 0.604 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.028 0.972 35 H 0.000 1.000 36 H 0.261 0.739 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.023 -8.574 2.227 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.065 3.935 4 C -0.219 4.219 5 C -0.133 4.133 6 C 0.052 3.948 7 O -0.303 6.303 8 C -0.049 4.049 9 C -0.040 4.040 10 N -0.250 5.250 11 C 0.066 3.934 12 C -0.540 4.540 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.538 5.538 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.063 4.063 21 C -0.190 4.190 22 C -0.108 4.108 23 C -0.203 4.203 24 C -0.202 4.202 25 C -0.151 4.151 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.253 0.747 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.046 0.954 35 H 0.017 0.983 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.034 -8.345 2.708 18.277 hybrid contribution 0.601 -0.064 -1.083 1.240 sum -15.432 -8.409 1.625 17.650 Atomic orbital electron populations 1.22992 0.78898 1.03559 1.01163 1.86077 1.20944 1.27110 1.89192 1.18922 0.92179 0.83952 0.98431 1.20968 0.99570 0.91909 1.09477 1.21168 0.94045 0.97466 1.00591 1.18141 0.89452 0.85339 1.01880 1.84723 1.79779 1.31609 1.34199 1.20159 0.96870 0.91373 0.96516 1.20990 0.88751 1.00289 0.93957 1.62346 1.24886 1.33082 1.04662 1.19797 0.80850 0.94846 0.97940 1.21056 0.96017 1.39373 0.97561 0.92137 1.24940 0.96503 0.96219 0.96742 1.69946 1.04513 1.47250 1.32075 0.86639 0.77292 0.79562 0.84369 1.20262 1.21470 1.20350 1.22085 0.96968 0.88965 0.98305 1.22271 1.03063 0.95727 0.97961 1.21010 0.99066 0.95115 0.95657 1.21848 1.02099 1.00622 0.95701 1.21835 1.00546 0.97559 1.00293 1.20228 0.91027 0.97970 1.05827 0.92830 0.88557 0.92884 0.85704 0.85568 0.74702 0.94358 0.89856 0.95353 0.98263 0.92962 0.93111 0.90099 0.90283 0.93128 0.92094 0.93829 0.92221 0.92425 0.93243 0.93406 0.92731 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.02 10.50 -19.70 -0.21 -4.23 16 3 C 0.11 1.51 6.69 -39.24 -0.26 1.25 16 4 C -0.20 -2.49 9.03 -39.45 -0.36 -2.84 16 5 C -0.11 -1.53 9.98 -39.45 -0.39 -1.92 16 6 C 0.10 1.53 6.68 -39.24 -0.26 1.27 16 7 O -0.49 -7.98 12.80 -19.68 -0.25 -8.24 16 8 C -0.05 -0.78 4.70 -104.49 -0.49 -1.27 16 9 C 0.09 1.60 4.61 -4.97 -0.02 1.58 16 10 N -0.53 -10.68 4.65 -237.52 -1.11 -11.78 16 11 C 0.19 4.71 4.44 -4.97 -0.02 4.69 16 12 C -0.50 -13.43 8.54 -34.44 -0.29 -13.73 16 13 H 0.06 1.61 7.10 -52.48 -0.37 1.24 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 16 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.07 1.21 4.71 -3.83 -0.02 1.19 16 21 C -0.15 -2.65 4.01 -26.73 -0.11 -2.76 16 22 C -0.09 -1.33 2.92 -90.62 -0.26 -1.60 16 23 C -0.15 -2.20 8.95 37.16 0.33 -1.87 16 24 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 25 C -0.13 -1.97 8.82 -39.45 -0.35 -2.32 16 26 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 29 H 0.13 1.20 6.29 -52.49 -0.33 0.87 16 30 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.40 5.63 9.06 45.56 0.41 6.04 16 32 H 0.04 0.68 5.83 -51.93 -0.30 0.38 16 33 H 0.08 1.61 7.64 -51.93 -0.40 1.21 16 34 H 0.03 0.77 7.87 -51.93 -0.41 0.36 16 35 H 0.00 -0.01 5.99 -51.93 -0.31 -0.32 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 37 H 0.05 0.89 6.70 -51.93 -0.35 0.54 16 38 H 0.08 1.64 5.43 -51.93 -0.28 1.36 16 39 H 0.08 1.64 6.36 -51.93 -0.33 1.31 16 40 H 0.05 0.86 6.25 -51.93 -0.32 0.53 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.93 6.61 -51.93 -0.34 0.59 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.13 1.88 8.01 -52.49 -0.42 1.46 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -29.72 378.43 -8.49 -38.20 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.07 Total: 6.72 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -1.27 Total: -17.23 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.37 Total: -37.20 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.46 Total: -12.46 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.72 -8.49 -38.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180059310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.879 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds