Wall clock time and date at job start Fri Apr 10 2020 21:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47087 * 295.10037 * 3 2 1 5 5 C 1.37093 * 120.00380 * 275.56938 * 4 3 2 6 6 H 1.07997 * 120.00131 * 177.12622 * 5 4 3 7 7 C 1.38946 * 120.00240 * 357.13417 * 5 4 3 8 8 N 1.31414 * 120.00180 * 31.75406 * 7 5 4 9 9 Si 1.86801 * 120.00446 * 211.75962 * 7 5 4 10 10 H 1.48501 * 109.47362 * 94.98658 * 9 7 5 11 11 H 1.48496 * 109.47576 * 214.99435 * 9 7 5 12 12 H 1.48503 * 109.46467 * 334.99277 * 9 7 5 13 13 C 1.34784 * 119.99746 * 95.57805 * 4 3 2 14 14 O 1.21287 * 119.99950 * 185.11353 * 13 4 3 15 15 C 1.50694 * 119.99789 * 5.10586 * 13 4 3 16 16 H 1.09000 * 109.47407 * 43.36172 * 15 13 4 17 17 C 1.53004 * 109.47592 * 283.36330 * 15 13 4 18 18 C 1.52991 * 109.47334 * 174.29722 * 17 15 13 19 19 O 1.42900 * 109.47153 * 163.36561 * 15 13 4 20 20 C 1.42897 * 113.99954 * 210.00272 * 19 15 13 21 21 H 1.08994 * 109.47552 * 329.99557 * 20 19 15 22 22 C 1.53003 * 109.47455 * 89.99852 * 20 19 15 23 23 C 1.52998 * 109.47356 * 59.99622 * 22 20 19 24 24 C 1.53005 * 109.46858 * 60.00210 * 23 22 20 25 25 C 1.53000 * 109.47196 * 299.99741 * 24 23 22 26 26 H 1.08996 * 109.47479 * 300.00647 * 25 24 23 27 27 C 1.53005 * 109.47196 * 179.97438 * 25 24 23 28 28 C 1.53005 * 109.46950 * 209.99759 * 20 19 15 29 29 H 4.40632 * 5.51433 * 180.02562 * 4 1 2 30 30 H 1.09009 * 109.46166 * 175.10616 * 3 2 1 31 31 H 1.08997 * 109.47374 * 55.10740 * 3 2 1 32 32 H 0.97003 * 120.00572 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46607 * 294.29954 * 17 15 13 34 34 H 1.08999 * 109.46596 * 54.29343 * 17 15 13 35 35 H 1.08999 * 109.47298 * 179.97438 * 18 17 15 36 36 H 1.09004 * 109.47463 * 299.99708 * 18 17 15 37 37 H 1.08999 * 109.47589 * 60.00229 * 18 17 15 38 38 H 1.08998 * 109.47150 * 179.97438 * 22 20 19 39 39 H 1.08994 * 109.46961 * 299.99867 * 22 20 19 40 40 H 1.09007 * 109.47154 * 300.00470 * 23 22 20 41 41 H 1.08994 * 109.47666 * 180.02562 * 23 22 20 42 42 H 1.09004 * 109.46911 * 180.02562 * 24 23 22 43 43 H 1.08996 * 109.47434 * 60.00416 * 24 23 22 44 44 H 1.09003 * 109.46609 * 300.00708 * 27 25 24 45 45 H 1.08993 * 109.46907 * 60.00187 * 27 25 24 46 46 H 1.09000 * 109.46917 * 180.02562 * 27 25 24 47 47 H 1.08990 * 109.47433 * 59.99856 * 28 20 19 48 48 H 1.09005 * 109.47328 * 180.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5850 1.2507 5 6 3.2541 0.1946 2.3721 6 1 3.5699 -0.2470 3.3057 7 6 2.9688 1.5529 2.3075 8 7 2.0505 1.9927 1.4768 9 14 3.8907 2.7541 3.4015 10 1 5.0417 3.3213 2.6541 11 1 2.9778 3.8510 3.8118 12 1 4.3857 2.0445 4.6085 13 6 3.4668 -1.8904 1.2990 14 8 3.7824 -2.3972 2.3547 15 6 3.4458 -2.7202 0.0413 16 1 3.8967 -2.1551 -0.7745 17 6 1.9992 -3.0667 -0.3172 18 6 1.9666 -3.7861 -1.6670 19 8 4.1856 -3.9243 0.2526 20 6 4.8062 -4.4398 -0.9268 21 1 4.2106 -4.1694 -1.7987 22 6 6.2102 -3.8475 -1.0649 23 6 7.0465 -4.2270 0.1588 24 6 7.1432 -5.7508 0.2578 25 6 5.7393 -6.3431 0.3959 26 1 5.2659 -5.9498 1.2955 27 6 5.8360 -7.8669 0.4942 28 6 4.9030 -5.9635 -0.8279 29 1 -1.0499 -0.0003 0.0001 30 1 3.0087 1.0249 -0.0877 31 1 3.0096 -0.5870 -0.8429 32 1 1.8515 2.9411 1.4314 33 1 1.5803 -3.7166 0.4512 34 1 1.4110 -2.1512 -0.3790 35 1 0.9361 -4.0334 -1.9222 36 1 2.3855 -3.1362 -2.4354 37 1 2.5549 -4.7016 -1.6052 38 1 6.6837 -4.2411 -1.9643 39 1 6.1413 -2.7621 -1.1354 40 1 6.5731 -3.8338 1.0586 41 1 8.0465 -3.8048 0.0608 42 1 7.7386 -6.0212 1.1299 43 1 7.6166 -6.1440 -0.6418 44 1 6.3092 -8.2596 -0.4057 45 1 6.4318 -8.1376 1.3658 46 1 4.8357 -8.2888 0.5922 47 1 3.9029 -6.3855 -0.7296 48 1 5.3768 -6.3567 -1.7274 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281511845.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:59:16 Heat of formation + Delta-G solvation = -46.917845 kcal Electronic energy + Delta-G solvation = -27252.570008 eV Core-core repulsion = 23694.530439 eV Total energy + Delta-G solvation = -3558.039569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21964 -40.00069 -37.66958 -37.01612 -34.52292 -33.55995 -33.11009 -32.96715 -31.21077 -28.87337 -27.91375 -27.22538 -26.04213 -23.42192 -22.95023 -22.12875 -21.16254 -20.36045 -19.77931 -18.32389 -18.23766 -17.39912 -16.71922 -16.46225 -16.12962 -15.90040 -15.73028 -15.47685 -15.01801 -14.89334 -14.64718 -14.29419 -14.04896 -13.87657 -13.64599 -13.45605 -13.30458 -13.17849 -12.89912 -12.83916 -12.66810 -12.64666 -12.58356 -12.43758 -12.15659 -12.13600 -11.83600 -11.74431 -11.35883 -11.16610 -11.14122 -11.01905 -10.78779 -10.55901 -10.38673 -9.99695 -9.97626 -8.42436 -5.84588 1.31874 1.40940 1.51621 1.83127 2.05307 2.31955 2.34602 2.62287 2.95503 3.38111 3.79856 3.80302 3.82746 3.90580 3.93403 3.99848 4.05085 4.26870 4.31052 4.34601 4.42924 4.53149 4.57469 4.61355 4.65718 4.74163 4.84049 4.86099 4.93566 4.93961 5.00396 5.02928 5.07328 5.11654 5.15081 5.19983 5.35022 5.36475 5.41179 5.41672 5.46948 5.48206 5.50518 5.69015 5.95224 6.33380 6.52975 7.12479 7.13819 7.39631 7.98683 8.56803 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.004515 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.762217 B = 6200.325027 C = 7204.993320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.148 4.148 3 C 0.225 3.775 4 N -0.447 5.447 5 C -0.363 4.363 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.854 5.854 9 Si 0.972 3.028 10 H -0.264 1.264 11 H -0.274 1.274 12 H -0.282 1.282 13 C 0.433 3.567 14 O -0.623 6.623 15 C 0.100 3.900 16 H 0.087 0.913 17 C -0.145 4.145 18 C -0.146 4.146 19 O -0.367 6.367 20 C 0.065 3.935 21 H 0.088 0.912 22 C -0.139 4.139 23 C -0.118 4.118 24 C -0.103 4.103 25 C -0.094 4.094 26 H 0.037 0.963 27 C -0.140 4.140 28 C -0.102 4.102 29 H 0.233 0.767 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.276 0.724 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.065 0.935 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.400 -11.307 -13.496 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.149 4.149 3 C 0.103 3.897 4 N -0.166 5.166 5 C -0.490 4.490 6 H 0.088 0.912 7 C -0.188 4.188 8 N -0.490 5.490 9 Si 0.796 3.204 10 H -0.189 1.189 11 H -0.199 1.199 12 H -0.207 1.207 13 C 0.223 3.777 14 O -0.509 6.509 15 C 0.038 3.962 16 H 0.105 0.895 17 C -0.183 4.183 18 C -0.202 4.202 19 O -0.286 6.286 20 C 0.008 3.992 21 H 0.105 0.895 22 C -0.177 4.177 23 C -0.156 4.156 24 C -0.141 4.141 25 C -0.112 4.112 26 H 0.056 0.944 27 C -0.197 4.197 28 C -0.139 4.139 29 H 0.250 0.750 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.084 0.916 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.498 -11.448 -12.859 17.795 hybrid contribution -0.133 1.233 1.232 1.749 sum 4.365 -10.214 -11.627 16.081 Atomic orbital electron populations 1.25138 0.96329 1.03566 1.01190 1.23240 0.94781 0.97625 0.99266 1.18609 0.85020 1.00579 0.85460 1.43948 1.55321 1.07223 1.10135 1.19436 1.47864 0.90349 0.91321 0.91169 1.25769 0.95249 0.98181 0.99589 1.70291 1.24004 1.16207 1.38483 0.85276 0.79009 0.77621 0.78525 1.18893 1.19904 1.20744 1.20772 0.83664 0.82116 0.91129 1.90474 1.54910 1.71651 1.33873 1.21686 0.93921 0.86684 0.93872 0.89517 1.22100 0.94551 1.02072 0.99570 1.21895 1.03292 1.00688 0.94362 1.88094 1.67735 1.38737 1.34000 1.22710 0.93128 0.95188 0.88134 0.89466 1.22061 0.96138 1.00223 0.99263 1.21401 0.99217 0.97087 0.97884 1.21521 0.96272 0.94099 1.02179 1.21030 0.95880 0.96219 0.98086 0.94428 1.21781 1.01700 0.93961 1.02258 1.21685 1.00658 0.92308 0.99227 0.75018 0.88247 0.88774 0.91404 0.93415 0.90511 0.91010 0.90984 0.91266 0.88186 0.93303 0.95452 0.91706 0.92715 0.89804 0.90909 0.93053 0.92884 0.91627 0.87861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.55 19.04 74.32 1.42 -8.13 16 2 C -0.15 -6.42 9.28 31.13 0.29 -6.14 16 3 C 0.23 9.93 4.78 84.57 0.40 10.34 16 4 N -0.45 -23.50 2.60 -645.43 -1.68 -25.18 16 5 C -0.36 -21.10 9.38 84.04 0.79 -20.32 16 6 H 0.07 4.53 7.34 -2.91 -0.02 4.50 16 7 C 0.02 0.91 4.91 84.93 0.42 1.33 16 8 N -0.85 -43.60 9.22 21.66 0.20 -43.40 16 9 Si 0.97 42.37 29.65 68.60 2.03 44.40 16 10 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.43 22.63 6.92 87.65 0.61 23.23 16 14 O -0.62 -38.68 16.17 15.44 0.25 -38.43 16 15 C 0.10 3.87 1.80 29.85 0.05 3.92 16 16 H 0.09 2.93 6.17 -2.39 -0.01 2.91 16 17 C -0.14 -4.95 5.41 30.59 0.17 -4.78 16 18 C -0.15 -3.40 8.60 71.98 0.62 -2.78 16 19 O -0.37 -13.82 7.81 -130.49 -1.02 -14.84 16 20 C 0.07 1.70 1.70 30.60 0.05 1.75 16 21 H 0.09 1.88 5.23 -2.39 -0.01 1.87 16 22 C -0.14 -3.43 5.62 30.59 0.17 -3.26 16 23 C -0.12 -3.31 5.78 30.60 0.18 -3.14 16 24 C -0.10 -2.37 5.20 30.60 0.16 -2.21 16 25 C -0.09 -2.31 2.58 -10.79 -0.03 -2.33 16 26 H 0.04 1.27 7.68 -2.39 -0.02 1.25 16 27 C -0.14 -2.65 9.19 71.98 0.66 -1.99 16 28 C -0.10 -2.19 4.82 30.60 0.15 -2.04 16 29 H 0.23 7.04 7.80 -4.42 -0.03 7.00 16 30 H 0.10 4.63 6.14 -2.38 -0.01 4.61 16 31 H 0.09 3.39 5.65 -2.39 -0.01 3.37 16 32 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 33 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.08 2.78 4.46 -2.39 -0.01 2.77 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.42 8.04 -2.38 -0.02 1.40 16 37 H 0.07 1.50 5.58 -2.39 -0.01 1.49 16 38 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.32 7.96 -2.39 -0.02 1.30 16 40 H 0.03 1.03 7.68 -2.38 -0.02 1.01 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.07 1.43 7.93 -2.39 -0.02 1.41 16 48 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -72.76 369.19 6.81 -65.95 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.93 Total: 28.06 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 6.10 Total: -16.56 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -1.48 Total: -68.58 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -0.77 Total: -53.27 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -72.76 6.81 -65.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281511845.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.029 kcal (2) G-P(sol) polarization free energy of solvation -72.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds