Wall clock time and date at job start Fri Apr 10 2020 21:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46978 * 171.22141 * 3 2 1 5 5 C 1.37102 * 119.99803 * 274.63524 * 4 3 2 6 6 H 1.08003 * 119.99467 * 184.35665 * 5 4 3 7 7 C 1.38943 * 120.00433 * 4.36121 * 5 4 3 8 8 N 1.31413 * 119.99708 * 20.27837 * 7 5 4 9 9 Si 1.86792 * 120.00245 * 200.28228 * 7 5 4 10 10 H 1.48499 * 109.47237 * 59.99536 * 9 7 5 11 11 H 1.48501 * 109.47550 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47167 * 300.00006 * 9 7 5 13 13 C 1.34775 * 119.99976 * 94.63036 * 4 3 2 14 14 O 1.21296 * 120.00168 * 184.69736 * 13 4 3 15 15 C 1.50694 * 120.00069 * 4.70614 * 13 4 3 16 16 H 1.09005 * 109.47297 * 42.75711 * 15 13 4 17 17 C 1.53004 * 109.46925 * 282.75998 * 15 13 4 18 18 C 1.53005 * 109.47224 * 173.94041 * 17 15 13 19 19 O 1.42895 * 109.47302 * 162.76305 * 15 13 4 20 20 C 1.42907 * 114.00012 * 273.27477 * 19 15 13 21 21 H 1.08998 * 109.46678 * 30.62479 * 20 19 15 22 22 C 1.52997 * 109.47148 * 270.62835 * 20 19 15 23 23 C 1.53008 * 109.46837 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47048 * 60.00345 * 23 22 20 25 25 C 1.53011 * 109.46675 * 299.99795 * 24 23 22 26 26 H 1.08996 * 109.47070 * 299.99757 * 25 24 23 27 27 C 1.53008 * 109.46571 * 180.02562 * 25 24 23 28 28 C 1.52994 * 109.47217 * 60.00340 * 25 24 23 29 29 H 4.40646 * 5.51373 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.46916 * 51.22461 * 3 2 1 31 31 H 1.08993 * 109.47066 * 291.22062 * 3 2 1 32 32 H 0.97004 * 119.99842 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.46824 * 53.94529 * 17 15 13 34 34 H 1.08993 * 109.47265 * 293.94109 * 17 15 13 35 35 H 1.09001 * 109.47100 * 296.40931 * 18 17 15 36 36 H 1.08999 * 109.47248 * 56.40034 * 18 17 15 37 37 H 1.08995 * 109.47129 * 176.40501 * 18 17 15 38 38 H 1.08998 * 109.47040 * 299.99422 * 22 20 19 39 39 H 1.09005 * 109.47456 * 60.00017 * 22 20 19 40 40 H 1.08998 * 109.47141 * 299.99736 * 23 22 20 41 41 H 1.09006 * 109.46800 * 179.97438 * 23 22 20 42 42 H 1.08992 * 109.47227 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.47647 * 59.99701 * 24 23 22 44 44 H 1.08996 * 109.47134 * 299.99606 * 27 25 24 45 45 H 1.08999 * 109.47022 * 60.00125 * 27 25 24 46 46 H 1.09005 * 109.46278 * 179.97438 * 27 25 24 47 47 H 1.08997 * 109.46972 * 179.97438 * 28 25 24 48 48 H 1.08996 * 109.47577 * 59.99727 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.3659 -0.2108 5 6 3.2715 1.8557 -1.4839 6 1 3.6970 2.8357 -1.6423 7 6 2.8638 1.0914 -2.5703 8 7 2.0064 0.1105 -2.3987 9 14 3.5345 1.4582 -4.2746 10 1 5.0122 1.3115 -4.2672 11 1 2.9481 0.5070 -5.2527 12 1 3.1770 2.8473 -4.6589 13 6 3.4469 2.1405 0.8468 14 8 3.7689 3.2975 0.6770 15 6 3.3970 1.5690 2.2403 16 1 3.8361 0.5713 2.2398 17 6 1.9418 1.4856 2.7055 18 6 1.8782 0.7680 4.0554 19 8 4.1331 2.4130 3.1278 20 6 5.5294 2.1149 3.1890 21 1 5.8591 1.7204 2.2279 22 6 5.7812 1.0735 4.2812 23 6 7.2761 0.7539 4.3462 24 6 8.0568 2.0297 4.6684 25 6 7.8049 3.0712 3.5761 26 1 8.1343 2.6766 2.6150 27 6 8.5862 4.3468 3.8980 28 6 6.3101 3.3907 3.5111 29 1 -1.0502 -0.0004 0.0003 30 1 3.0096 -0.6428 -0.8012 31 1 3.0095 -0.3711 0.9579 32 1 1.7220 -0.4233 -3.1570 33 1 1.3570 0.9313 1.9715 34 1 1.5353 2.4915 2.8093 35 1 2.2253 -0.2585 3.9378 36 1 2.5143 1.2866 4.7728 37 1 0.8501 0.7649 4.4171 38 1 5.4515 1.4679 5.2423 39 1 5.2254 0.1643 4.0515 40 1 7.6055 0.3592 3.3850 41 1 7.4556 0.0122 5.1247 42 1 9.1216 1.8020 4.7152 43 1 7.7275 2.4243 5.6296 44 1 8.2572 4.7415 4.8592 45 1 9.6510 4.1188 3.9440 46 1 8.4070 5.0885 3.1196 47 1 6.1308 4.1330 2.7333 48 1 5.9807 3.7853 4.4723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281511847.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:59:19 Heat of formation + Delta-G solvation = -37.763667 kcal Electronic energy + Delta-G solvation = -27017.273191 eV Core-core repulsion = 23459.630578 eV Total energy + Delta-G solvation = -3557.642614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.63064 -38.48691 -36.46010 -35.06730 -33.30173 -32.20411 -31.79403 -31.26076 -29.58984 -27.19603 -26.36992 -26.19164 -24.21028 -22.31848 -21.47897 -21.21356 -19.69563 -19.09989 -17.94420 -16.80590 -16.51361 -15.99480 -15.26445 -14.88007 -14.79159 -14.34679 -14.12659 -14.00141 -13.79867 -13.64724 -13.31515 -12.97310 -12.70262 -12.38905 -12.34256 -12.21485 -12.08952 -11.76423 -11.68170 -11.56915 -11.28201 -11.03582 -10.95938 -10.88102 -10.69907 -10.55210 -10.52211 -10.42496 -10.33810 -10.18235 -10.08343 -9.46190 -9.31890 -9.23665 -8.76024 -8.06828 -7.96105 -6.31995 -3.82213 3.15647 3.23552 3.27077 3.64101 3.85506 3.96897 4.09034 4.19806 4.71333 4.78840 4.89723 4.98555 5.03286 5.16093 5.22325 5.36389 5.37461 5.43370 5.48591 5.55489 5.60204 5.64489 5.65300 5.69056 5.70058 5.75087 5.86668 5.97040 5.98879 6.04500 6.13554 6.15971 6.19392 6.25454 6.26747 6.32919 6.34948 6.46053 6.54407 6.55983 6.71125 6.87479 7.07854 7.54460 7.61803 8.01792 8.43593 8.84477 9.13517 9.35513 9.90347 10.64616 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.004676 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.731921 B = 5986.965379 C = 7213.098546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.098 4.098 3 C 0.226 3.774 4 N -0.442 5.442 5 C -0.309 4.309 6 H 0.106 0.894 7 C 0.029 3.971 8 N -0.868 5.868 9 Si 0.924 3.076 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.423 3.577 14 O -0.570 6.570 15 C 0.087 3.913 16 H 0.066 0.934 17 C -0.124 4.124 18 C -0.144 4.144 19 O -0.352 6.352 20 C 0.093 3.907 21 H 0.058 0.942 22 C -0.140 4.140 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.091 4.091 26 H 0.070 0.930 27 C -0.145 4.145 28 C -0.107 4.107 29 H 0.198 0.802 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.269 0.731 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.002 -2.795 12.594 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.099 4.099 3 C 0.103 3.897 4 N -0.162 5.162 5 C -0.436 4.436 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.508 5.508 9 Si 0.751 3.249 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.211 3.789 14 O -0.453 6.453 15 C 0.025 3.975 16 H 0.084 0.916 17 C -0.162 4.162 18 C -0.201 4.201 19 O -0.269 6.269 20 C 0.035 3.965 21 H 0.076 0.924 22 C -0.178 4.178 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.109 4.109 26 H 0.089 0.911 27 C -0.202 4.202 28 C -0.144 4.144 29 H 0.215 0.785 30 H 0.137 0.863 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.024 -2.195 12.479 14.487 hybrid contribution -0.101 -0.207 -1.258 1.279 sum 6.923 -2.401 11.221 13.401 Atomic orbital electron populations 1.24238 0.95341 1.02087 1.07181 1.22972 0.94159 0.98317 0.94497 1.18572 0.84592 0.86397 1.00163 1.43870 1.55715 1.10909 1.05720 1.19698 1.39425 1.03987 0.80506 0.87654 1.25230 0.95470 0.96674 0.99967 1.70059 1.27677 1.21258 1.31763 0.86028 0.79280 0.78350 0.81275 1.19957 1.20987 1.19923 1.20644 0.85123 0.87085 0.86022 1.90523 1.52612 1.16867 1.85253 1.21987 0.93712 0.92870 0.88886 0.91618 1.21718 0.93824 1.02401 0.98229 1.21705 1.01371 0.99823 0.97223 1.87933 1.18549 1.58070 1.62388 1.22012 0.82176 0.95001 0.97348 0.92378 1.22078 0.96152 0.99327 1.00265 1.21491 0.94889 0.97391 1.01702 1.21620 0.99546 0.95275 0.98714 1.21109 0.95041 0.95644 0.99149 0.91111 1.21799 0.99428 0.97352 1.01627 1.21570 0.92955 0.97220 1.02685 0.78487 0.86324 0.92521 0.92052 0.89094 0.91053 0.93177 0.92212 0.92876 0.91346 0.91983 0.91917 0.91949 0.92182 0.91976 0.92775 0.92886 0.92484 0.90715 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.56 18.96 29.55 0.56 -5.00 16 2 C -0.10 -2.17 8.99 -37.12 -0.33 -2.50 16 3 C 0.23 4.98 4.79 -6.83 -0.03 4.95 16 4 N -0.44 -11.14 2.60 -117.94 -0.31 -11.44 16 5 C -0.31 -8.49 9.46 -14.93 -0.14 -8.64 16 6 H 0.11 3.08 7.27 -52.48 -0.38 2.70 16 7 C 0.03 0.76 5.09 -17.47 -0.09 0.67 16 8 N -0.87 -22.25 8.63 55.50 0.48 -21.77 16 9 Si 0.92 20.51 29.60 -169.99 -5.03 15.48 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.42 10.43 6.71 -10.99 -0.07 10.35 16 14 O -0.57 -16.16 16.18 -13.75 -0.22 -16.39 16 15 C 0.09 1.69 1.48 -27.88 -0.04 1.65 16 16 H 0.07 1.16 6.04 -51.93 -0.31 0.84 16 17 C -0.12 -2.21 5.44 -26.73 -0.15 -2.36 16 18 C -0.14 -2.01 9.85 37.16 0.37 -1.64 16 19 O -0.35 -6.68 8.76 -54.53 -0.48 -7.16 16 20 C 0.09 1.49 2.38 -26.73 -0.06 1.42 16 21 H 0.06 1.03 7.72 -51.93 -0.40 0.63 16 22 C -0.14 -1.78 5.51 -26.73 -0.15 -1.93 16 23 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 24 C -0.11 -1.16 5.20 -26.73 -0.14 -1.30 16 25 C -0.09 -1.08 2.72 -90.61 -0.25 -1.32 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 28 C -0.11 -1.56 4.86 -26.73 -0.13 -1.69 16 29 H 0.20 3.34 7.80 -54.08 -0.42 2.92 16 30 H 0.12 2.76 6.17 -51.93 -0.32 2.44 16 31 H 0.06 1.06 5.73 -51.93 -0.30 0.76 16 32 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 33 H 0.09 1.71 4.44 -51.93 -0.23 1.48 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.82 7.76 -51.93 -0.40 0.42 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.77 7.84 -51.93 -0.41 0.37 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -30.58 376.73 -8.59 -39.17 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.23 Total: 6.35 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.47 Total: -9.90 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.17 Total: -33.21 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.70 Total: -23.55 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.58 -8.59 -39.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281511847.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.402 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds