Wall clock time and date at job start Fri Apr 10 2020 21:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46978 * 171.22141 * 3 2 1 5 5 C 1.37102 * 119.99803 * 274.63524 * 4 3 2 6 6 H 1.08003 * 119.99467 * 184.35665 * 5 4 3 7 7 C 1.38943 * 120.00433 * 4.36121 * 5 4 3 8 8 N 1.31413 * 119.99708 * 20.27837 * 7 5 4 9 9 Si 1.86792 * 120.00245 * 200.28228 * 7 5 4 10 10 H 1.48499 * 109.47237 * 59.99536 * 9 7 5 11 11 H 1.48501 * 109.47550 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47167 * 300.00006 * 9 7 5 13 13 C 1.34775 * 119.99976 * 94.63036 * 4 3 2 14 14 O 1.21296 * 120.00168 * 184.69736 * 13 4 3 15 15 C 1.50694 * 120.00069 * 4.70614 * 13 4 3 16 16 H 1.09005 * 109.47297 * 42.75711 * 15 13 4 17 17 C 1.53004 * 109.46925 * 282.75998 * 15 13 4 18 18 C 1.53005 * 109.47224 * 173.94041 * 17 15 13 19 19 O 1.42895 * 109.47302 * 162.76305 * 15 13 4 20 20 C 1.42907 * 114.00012 * 273.27477 * 19 15 13 21 21 H 1.08998 * 109.46678 * 30.62479 * 20 19 15 22 22 C 1.52997 * 109.47148 * 270.62835 * 20 19 15 23 23 C 1.53008 * 109.46837 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47048 * 60.00345 * 23 22 20 25 25 C 1.53011 * 109.46675 * 299.99795 * 24 23 22 26 26 H 1.08996 * 109.47070 * 299.99757 * 25 24 23 27 27 C 1.53008 * 109.46571 * 180.02562 * 25 24 23 28 28 C 1.52994 * 109.47217 * 60.00340 * 25 24 23 29 29 H 4.40646 * 5.51373 * 180.02562 * 4 1 2 30 30 H 1.08999 * 109.46916 * 51.22461 * 3 2 1 31 31 H 1.08993 * 109.47066 * 291.22062 * 3 2 1 32 32 H 0.97004 * 119.99842 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.46824 * 53.94529 * 17 15 13 34 34 H 1.08993 * 109.47265 * 293.94109 * 17 15 13 35 35 H 1.09001 * 109.47100 * 296.40931 * 18 17 15 36 36 H 1.08999 * 109.47248 * 56.40034 * 18 17 15 37 37 H 1.08995 * 109.47129 * 176.40501 * 18 17 15 38 38 H 1.08998 * 109.47040 * 299.99422 * 22 20 19 39 39 H 1.09005 * 109.47456 * 60.00017 * 22 20 19 40 40 H 1.08998 * 109.47141 * 299.99736 * 23 22 20 41 41 H 1.09006 * 109.46800 * 179.97438 * 23 22 20 42 42 H 1.08992 * 109.47227 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.47647 * 59.99701 * 24 23 22 44 44 H 1.08996 * 109.47134 * 299.99606 * 27 25 24 45 45 H 1.08999 * 109.47022 * 60.00125 * 27 25 24 46 46 H 1.09005 * 109.46278 * 179.97438 * 27 25 24 47 47 H 1.08997 * 109.46972 * 179.97438 * 28 25 24 48 48 H 1.08996 * 109.47577 * 59.99727 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.3659 -0.2108 5 6 3.2715 1.8557 -1.4839 6 1 3.6970 2.8357 -1.6423 7 6 2.8638 1.0914 -2.5703 8 7 2.0064 0.1105 -2.3987 9 14 3.5345 1.4582 -4.2746 10 1 5.0122 1.3115 -4.2672 11 1 2.9481 0.5070 -5.2527 12 1 3.1770 2.8473 -4.6589 13 6 3.4469 2.1405 0.8468 14 8 3.7689 3.2975 0.6770 15 6 3.3970 1.5690 2.2403 16 1 3.8361 0.5713 2.2398 17 6 1.9418 1.4856 2.7055 18 6 1.8782 0.7680 4.0554 19 8 4.1331 2.4130 3.1278 20 6 5.5294 2.1149 3.1890 21 1 5.8591 1.7204 2.2279 22 6 5.7812 1.0735 4.2812 23 6 7.2761 0.7539 4.3462 24 6 8.0568 2.0297 4.6684 25 6 7.8049 3.0712 3.5761 26 1 8.1343 2.6766 2.6150 27 6 8.5862 4.3468 3.8980 28 6 6.3101 3.3907 3.5111 29 1 -1.0502 -0.0004 0.0003 30 1 3.0096 -0.6428 -0.8012 31 1 3.0095 -0.3711 0.9579 32 1 1.7220 -0.4233 -3.1570 33 1 1.3570 0.9313 1.9715 34 1 1.5353 2.4915 2.8093 35 1 2.2253 -0.2585 3.9378 36 1 2.5143 1.2866 4.7728 37 1 0.8501 0.7649 4.4171 38 1 5.4515 1.4679 5.2423 39 1 5.2254 0.1643 4.0515 40 1 7.6055 0.3592 3.3850 41 1 7.4556 0.0122 5.1247 42 1 9.1216 1.8020 4.7152 43 1 7.7275 2.4243 5.6296 44 1 8.2572 4.7415 4.8592 45 1 9.6510 4.1188 3.9440 46 1 8.4070 5.0885 3.1196 47 1 6.1308 4.1330 2.7333 48 1 5.9807 3.7853 4.4723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281511847.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:59:19 Heat of formation + Delta-G solvation = -52.882513 kcal Electronic energy + Delta-G solvation = -27017.928794 eV Core-core repulsion = 23459.630578 eV Total energy + Delta-G solvation = -3558.298216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.21055 -39.88456 -37.88806 -37.00693 -34.76665 -33.60801 -33.13265 -33.10381 -30.72463 -28.89205 -27.88673 -27.29338 -26.04345 -23.40103 -22.87796 -22.33328 -20.93928 -20.62185 -19.78531 -18.49812 -18.30349 -17.53071 -16.69812 -16.57444 -15.97834 -15.87892 -15.69980 -15.35415 -15.05690 -14.94208 -14.70770 -14.37364 -14.10510 -13.93092 -13.75625 -13.51979 -13.29395 -13.22947 -12.89866 -12.79931 -12.76002 -12.67228 -12.48587 -12.17673 -12.04438 -11.96808 -11.87382 -11.76293 -11.51902 -11.37361 -11.26907 -11.21423 -11.00449 -10.73107 -10.51533 -9.96264 -9.87586 -8.31603 -5.90790 1.33752 1.39429 1.48763 1.82386 2.09247 2.32437 2.38756 2.59971 3.00656 3.18802 3.72804 3.77822 3.80033 3.92779 3.95843 4.01788 4.05483 4.21029 4.22166 4.26642 4.40782 4.52824 4.53370 4.58601 4.63386 4.67116 4.76313 4.85290 4.92257 4.98090 5.04222 5.06837 5.09821 5.11663 5.15339 5.19027 5.28947 5.31889 5.38766 5.42261 5.43323 5.44152 5.46501 5.56312 5.93369 6.23405 6.46561 7.12035 7.16864 7.38834 7.95203 8.61528 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.004676 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.731921 B = 5986.965379 C = 7213.098546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.137 4.137 3 C 0.229 3.771 4 N -0.449 5.449 5 C -0.352 4.352 6 H 0.072 0.928 7 C 0.006 3.994 8 N -0.868 5.868 9 Si 0.983 3.017 10 H -0.271 1.271 11 H -0.267 1.267 12 H -0.281 1.281 13 C 0.408 3.592 14 O -0.624 6.624 15 C 0.101 3.899 16 H 0.087 0.913 17 C -0.121 4.121 18 C -0.134 4.134 19 O -0.367 6.367 20 C 0.085 3.915 21 H 0.031 0.969 22 C -0.131 4.131 23 C -0.115 4.115 24 C -0.109 4.109 25 C -0.089 4.089 26 H 0.056 0.944 27 C -0.142 4.142 28 C -0.104 4.104 29 H 0.232 0.768 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.274 0.726 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.043 0.957 47 H 0.035 0.965 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.199 -4.882 14.185 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.139 4.139 3 C 0.107 3.893 4 N -0.168 5.168 5 C -0.479 4.479 6 H 0.089 0.911 7 C -0.197 4.197 8 N -0.506 5.506 9 Si 0.807 3.193 10 H -0.196 1.196 11 H -0.192 1.192 12 H -0.207 1.207 13 C 0.198 3.802 14 O -0.511 6.511 15 C 0.040 3.960 16 H 0.105 0.895 17 C -0.159 4.159 18 C -0.191 4.191 19 O -0.285 6.285 20 C 0.027 3.973 21 H 0.049 0.951 22 C -0.169 4.169 23 C -0.153 4.153 24 C -0.146 4.146 25 C -0.107 4.107 26 H 0.075 0.925 27 C -0.199 4.199 28 C -0.142 4.142 29 H 0.248 0.752 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.205 -4.331 14.081 16.399 hybrid contribution -0.223 0.468 -1.814 1.887 sum 6.982 -3.863 12.266 14.633 Atomic orbital electron populations 1.25088 0.96283 1.00225 1.05472 1.23157 0.94681 0.99985 0.96086 1.18577 0.85111 0.84385 1.01229 1.44059 1.55411 1.12101 1.05229 1.19546 1.41972 1.03845 0.82565 0.91051 1.25873 0.94956 0.96250 1.02596 1.70160 1.26773 1.20850 1.32796 0.85159 0.78805 0.77955 0.77354 1.19587 1.19152 1.20715 1.21710 0.83887 0.86613 0.87980 1.90470 1.54888 1.19293 1.86413 1.21892 0.95237 0.93157 0.85741 0.89529 1.21709 0.92078 1.01694 1.00398 1.21650 1.02799 1.00165 0.94483 1.87915 1.20109 1.58790 1.61683 1.22266 0.80743 0.96682 0.97589 0.95107 1.22010 0.97957 0.98046 0.98886 1.21519 0.93190 0.98249 1.02332 1.21607 1.00788 0.94190 0.98043 1.21109 0.92817 0.97238 0.99584 0.92508 1.21783 1.00347 0.96195 1.01614 1.21572 0.95208 0.95840 1.01543 0.75168 0.87858 0.89313 0.91552 0.89921 0.93187 0.91340 0.91936 0.91059 0.90376 0.91474 0.92574 0.89372 0.90162 0.90908 0.91796 0.90968 0.93818 0.94561 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.97 18.96 74.32 1.41 -8.56 16 2 C -0.14 -6.02 8.99 31.13 0.28 -5.75 16 3 C 0.23 10.17 4.79 84.57 0.41 10.58 16 4 N -0.45 -23.54 2.60 -645.42 -1.68 -25.22 16 5 C -0.35 -20.29 9.46 84.04 0.80 -19.50 16 6 H 0.07 4.50 7.27 -2.91 -0.02 4.48 16 7 C 0.01 0.33 5.09 84.92 0.43 0.77 16 8 N -0.87 -44.28 8.63 21.66 0.19 -44.10 16 9 Si 0.98 42.49 29.60 68.60 2.03 44.52 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 C 0.41 21.19 6.71 87.66 0.59 21.77 16 14 O -0.62 -38.09 16.18 15.37 0.25 -37.84 16 15 C 0.10 4.00 1.48 29.85 0.04 4.05 16 16 H 0.09 3.01 6.04 -2.38 -0.01 3.00 16 17 C -0.12 -4.27 5.44 30.60 0.17 -4.11 16 18 C -0.13 -3.41 9.85 71.98 0.71 -2.70 16 19 O -0.37 -14.32 8.76 -130.53 -1.14 -15.46 16 20 C 0.08 2.78 2.38 30.59 0.07 2.85 16 21 H 0.03 1.16 7.72 -2.39 -0.02 1.14 16 22 C -0.13 -3.10 5.51 30.60 0.17 -2.93 16 23 C -0.12 -2.17 5.92 30.60 0.18 -1.99 16 24 C -0.11 -1.94 5.20 30.60 0.16 -1.78 16 25 C -0.09 -2.08 2.72 -10.79 -0.03 -2.11 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 28 C -0.10 -3.17 4.86 30.59 0.15 -3.02 16 29 H 0.23 7.11 7.80 -4.41 -0.03 7.07 16 30 H 0.10 4.86 6.17 -2.39 -0.01 4.84 16 31 H 0.09 3.25 5.73 -2.39 -0.01 3.24 16 32 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 33 H 0.08 3.06 4.44 -2.39 -0.01 3.05 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.57 7.76 -2.39 -0.02 1.55 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.07 1.51 7.84 -2.38 -0.02 1.49 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -70.34 376.73 6.75 -63.59 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.91 Total: 29.08 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 6.19 Total: -14.58 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -1.49 Total: -69.32 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.89 Total: -53.30 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.34 6.75 -63.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281511847.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.708 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds