Wall clock time and date at job start Fri Apr 10 2020 22:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48493 * 109.47251 * 270.27615 * 3 2 1 5 5 H 1.48506 * 109.47129 * 30.27935 * 3 2 1 6 6 H 1.48505 * 109.47197 * 150.27205 * 3 2 1 7 7 C 1.38806 * 119.99829 * 180.27186 * 2 1 3 8 8 H 1.08000 * 120.00243 * 162.16859 * 7 2 1 9 9 N 1.36943 * 120.00144 * 342.17496 * 7 2 1 10 10 C 1.46957 * 120.59229 * 151.69642 * 9 7 2 11 11 C 1.53815 * 108.39988 * 124.75383 * 10 9 7 12 12 N 1.46966 * 108.57447 * 49.63489 * 11 10 9 13 13 C 1.34777 * 120.59305 * 124.67484 * 12 11 10 14 14 O 1.21281 * 120.00413 * 179.97438 * 13 12 11 15 15 C 1.50704 * 119.99976 * 359.96900 * 13 12 11 16 16 H 1.08996 * 110.12983 * 299.76296 * 15 13 12 17 17 C 1.54798 * 110.15209 * 61.46111 * 15 13 12 18 18 C 1.55329 * 104.99536 * 122.76802 * 17 15 13 19 19 C 1.53924 * 102.08485 * 22.19342 * 18 17 15 20 20 H 1.09002 * 111.01422 * 79.37618 * 19 18 17 21 21 C 1.52373 * 113.25795 * 204.94710 * 19 18 17 22 22 C 1.53628 * 107.60372 * 174.90504 * 21 19 18 23 23 C 1.52827 * 110.62032 * 303.58774 * 22 21 19 24 24 C 1.53641 * 110.63635 * 53.87068 * 23 22 21 25 25 N 1.45532 * 107.85418 * 302.86730 * 24 23 22 26 26 C 1.46964 * 118.81331 * 304.64551 * 12 11 10 27 27 C 1.46956 * 120.59188 * 331.96946 * 9 7 2 28 28 H 0.97004 * 119.99805 * 359.72339 * 1 2 3 29 29 H 1.09002 * 109.60877 * 244.53415 * 10 9 7 30 30 H 1.09000 * 109.61677 * 5.04719 * 10 9 7 31 31 H 1.08998 * 109.73975 * 289.84551 * 11 10 9 32 32 H 1.09004 * 109.53481 * 169.30045 * 11 10 9 33 33 H 1.09002 * 110.33496 * 241.64822 * 17 15 13 34 34 H 1.09000 * 110.33772 * 3.78147 * 17 15 13 35 35 H 1.09003 * 110.90608 * 140.38955 * 18 17 15 36 36 H 1.08999 * 110.90898 * 263.99674 * 18 17 15 37 37 H 1.09004 * 109.82964 * 294.42977 * 21 19 18 38 38 H 1.09002 * 109.83431 * 55.31448 * 21 19 18 39 39 H 1.09000 * 109.24907 * 63.88449 * 22 21 19 40 40 H 1.08998 * 109.24859 * 183.33652 * 22 21 19 41 41 H 1.09000 * 109.24137 * 174.16676 * 23 22 21 42 42 H 1.08998 * 109.24283 * 293.57078 * 23 22 21 43 43 H 1.09005 * 109.78214 * 62.45284 * 24 23 22 44 44 H 1.08997 * 109.78433 * 183.27740 * 24 23 22 45 45 H 1.08999 * 109.60688 * 295.48356 * 26 12 11 46 46 H 1.09003 * 109.60758 * 174.97491 * 26 12 11 47 47 H 1.09004 * 109.61155 * 354.95274 * 27 9 7 48 48 H 1.08998 * 109.61013 * 115.46491 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4919 2.0498 -1.4000 5 1 1.4506 2.6510 0.7060 6 1 3.5507 1.4385 0.6943 7 6 2.0102 -1.2021 -0.0057 8 1 3.0513 -1.2233 -0.2922 9 7 1.3748 -2.3613 0.3518 10 6 1.8102 -3.6529 -0.1975 11 6 2.1203 -4.5994 0.9747 12 7 0.9869 -4.5732 1.9099 13 6 0.3616 -5.7141 2.2619 14 8 -0.5723 -5.6802 3.0349 15 6 0.8228 -7.0320 1.6948 16 1 0.7385 -7.0229 0.6082 17 6 2.2868 -7.3098 2.1139 18 6 2.2409 -8.6746 2.8543 19 6 0.9454 -9.2968 2.3029 20 1 1.1072 -9.7236 1.3131 21 6 0.3230 -10.3220 3.2427 22 6 -1.0162 -10.7604 2.6308 23 6 -1.9202 -9.5515 2.3919 24 6 -1.1933 -8.4892 1.5532 25 7 0.0294 -8.1269 2.2544 26 6 0.5480 -3.2809 2.4549 27 6 0.2416 -2.3352 1.2871 28 1 -0.4850 0.8401 0.0041 29 1 1.0153 -4.0757 -0.8121 30 1 2.7063 -3.5104 -0.8014 31 1 3.0242 -4.2683 1.4859 32 1 2.2604 -5.6126 0.5978 33 1 2.9264 -7.3776 1.2339 34 1 2.6448 -6.5265 2.7820 35 1 3.1060 -9.2858 2.5973 36 1 2.1748 -8.5301 3.9326 37 1 0.9842 -11.1830 3.3409 38 1 0.1540 -9.8722 4.2211 39 1 -0.8302 -11.2631 1.6817 40 1 -1.5135 -11.4511 3.3118 41 1 -2.8182 -9.8731 1.8644 42 1 -2.2035 -9.1195 3.3517 43 1 -0.9490 -8.8972 0.5723 44 1 -1.8281 -7.6103 1.4403 45 1 1.3400 -2.8561 3.0716 46 1 -0.3502 -3.4234 3.0558 47 1 0.1015 -1.3220 1.6639 48 1 -0.6624 -2.6662 0.7759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900775899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:47 Heat of formation + Delta-G solvation = 1.348842 kcal Electronic energy + Delta-G solvation = -27006.305093 eV Core-core repulsion = 23482.651276 eV Total energy + Delta-G solvation = -3523.653817 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.59122 -38.82493 -36.62759 -35.11316 -33.80284 -32.33857 -31.16951 -30.62897 -29.19506 -27.87455 -26.65850 -23.87432 -23.42485 -22.65862 -22.10348 -21.28766 -20.21081 -19.83655 -18.58319 -17.04264 -16.22664 -16.09842 -15.80638 -15.06152 -14.77815 -14.54571 -14.34533 -14.07355 -13.75124 -13.67988 -13.46187 -13.38363 -13.26845 -12.88993 -12.78504 -12.56137 -12.24842 -11.76536 -11.59201 -11.40907 -11.23230 -11.20849 -10.87941 -10.80940 -10.79343 -10.70156 -10.54080 -10.47995 -10.41442 -10.24262 -9.94117 -9.82257 -9.25101 -8.58416 -8.25237 -8.15827 -6.70795 -5.84834 -3.29838 3.09604 3.31276 3.33992 3.41579 3.43587 3.99505 4.38235 4.43519 4.49819 4.76144 4.79152 4.87187 4.96829 5.07478 5.11903 5.20173 5.28448 5.32726 5.33771 5.43923 5.54000 5.65252 5.69311 5.71362 5.75990 5.78123 5.79020 5.83644 5.89073 5.90981 6.01017 6.08750 6.11371 6.17569 6.30361 6.36808 6.40746 6.52100 6.69688 6.86575 6.97090 7.19230 7.29601 7.56156 7.72265 8.01223 8.36106 8.73168 9.11891 9.75004 10.31825 11.22411 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.033163 B = 0.003287 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.107234 B = 8515.229456 C = 8887.222719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.130 3.870 11 C 0.088 3.912 12 N -0.600 5.600 13 C 0.517 3.483 14 O -0.535 6.535 15 C 0.065 3.935 16 H 0.069 0.931 17 C -0.118 4.118 18 C -0.115 4.115 19 C 0.066 3.934 20 H 0.054 0.946 21 C -0.104 4.104 22 C -0.119 4.119 23 C -0.112 4.112 24 C 0.065 3.935 25 N -0.511 5.511 26 C 0.090 3.910 27 C 0.159 3.841 28 H 0.255 0.745 29 H 0.021 0.979 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -20.344 3.741 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.037 4.037 12 N -0.333 5.333 13 C 0.303 3.697 14 O -0.411 6.411 15 C -0.047 4.047 16 H 0.087 0.913 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.041 4.041 20 H 0.071 0.929 21 C -0.142 4.142 22 C -0.156 4.156 23 C -0.150 4.150 24 C -0.063 4.063 25 N -0.236 5.236 26 C -0.034 4.034 27 C 0.033 3.967 28 H 0.065 0.935 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.117 0.883 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.245 -19.982 4.601 20.627 hybrid contribution 0.589 0.822 -1.067 1.470 sum 2.834 -19.160 3.534 19.688 Atomic orbital electron populations 1.70033 1.05339 1.25753 1.53267 1.25074 0.95270 0.98563 1.00620 0.86291 0.79188 0.83507 0.77725 1.21365 1.21485 1.20407 1.19170 0.92872 0.84683 1.41996 0.91518 1.44009 1.36918 1.01477 1.48966 1.21371 0.98248 0.87529 0.92558 1.22524 0.88686 1.00145 0.92329 1.48033 1.33136 1.06725 1.45434 1.20302 0.82910 0.84701 0.81784 1.90632 1.28514 1.86496 1.35474 1.21905 0.93935 0.91055 0.97759 0.91324 1.22704 0.93623 0.98388 1.00926 1.22397 0.96526 0.95369 1.00962 1.22586 0.92052 0.91362 0.98139 0.92851 1.21509 0.95946 0.97342 0.99394 1.21567 0.96062 0.97541 1.00467 1.21562 0.97506 0.94865 1.01093 1.21925 0.91473 0.98736 0.94162 1.62247 1.04418 1.03464 1.53503 1.22456 0.99729 0.82826 0.98381 1.21181 0.88956 0.98645 0.87937 0.93458 0.96089 0.91582 0.91632 0.91004 0.90400 0.90273 0.90873 0.90413 0.91736 0.90680 0.92637 0.92009 0.91838 0.90924 0.95310 0.90417 0.92342 0.90249 0.88316 0.96034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 11.21 55.49 0.62 -25.20 16 2 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.86 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.45 2.96 -171.78 -0.51 -14.96 16 10 C 0.13 2.58 6.70 -3.37 -0.02 2.56 16 11 C 0.09 1.43 5.62 -3.36 -0.02 1.41 16 12 N -0.60 -11.05 2.93 -172.21 -0.51 -11.56 16 13 C 0.52 9.37 6.95 -10.98 -0.08 9.30 16 14 O -0.53 -11.53 15.88 5.56 0.09 -11.44 16 15 C 0.07 0.91 2.12 -68.22 -0.14 0.77 16 16 H 0.07 0.93 7.65 -51.93 -0.40 0.53 16 17 C -0.12 -1.31 4.93 -24.55 -0.12 -1.43 16 18 C -0.11 -1.11 6.61 -25.01 -0.17 -1.28 16 19 C 0.07 0.69 2.62 -66.57 -0.17 0.51 16 20 H 0.05 0.53 8.08 -51.93 -0.42 0.11 16 21 C -0.10 -0.96 5.67 -26.73 -0.15 -1.11 16 22 C -0.12 -1.05 5.94 -26.49 -0.16 -1.21 16 23 C -0.11 -1.19 6.06 -26.49 -0.16 -1.35 16 24 C 0.07 0.82 5.85 -4.23 -0.02 0.80 16 25 N -0.51 -6.86 3.79 -218.52 -0.83 -7.69 16 26 C 0.09 1.85 6.59 -3.60 -0.02 1.82 16 27 C 0.16 3.84 5.51 -3.60 -0.02 3.82 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.23 7.93 -51.93 -0.41 0.81 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.93 4.62 -51.93 -0.24 0.69 16 33 H 0.08 0.71 7.53 -51.93 -0.39 0.32 16 34 H 0.08 0.97 7.33 -51.93 -0.38 0.59 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.33 8.06 -51.93 -0.42 -0.09 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.08 1.66 6.99 -51.93 -0.36 1.30 16 47 H 0.10 2.62 5.99 -51.93 -0.31 2.31 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -31.28 359.53 -10.61 -41.89 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.38 Total: -0.27 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.49 Total: 7.61 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -1.22 Total: -59.40 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.28 -10.61 -41.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900775899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.239 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds