Wall clock time and date at job start Fri Apr 10 2020 22:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00015 * 2 1 4 4 H 1.48493 * 109.47251 * 270.27615 * 3 2 1 5 5 H 1.48506 * 109.47129 * 30.27935 * 3 2 1 6 6 H 1.48505 * 109.47197 * 150.27205 * 3 2 1 7 7 C 1.38806 * 119.99829 * 180.27186 * 2 1 3 8 8 H 1.08000 * 120.00243 * 162.16859 * 7 2 1 9 9 N 1.36943 * 120.00144 * 342.17496 * 7 2 1 10 10 C 1.46957 * 120.59229 * 151.69642 * 9 7 2 11 11 C 1.53815 * 108.39988 * 124.75383 * 10 9 7 12 12 N 1.46966 * 108.57447 * 49.63489 * 11 10 9 13 13 C 1.34777 * 120.59305 * 124.67484 * 12 11 10 14 14 O 1.21281 * 120.00413 * 179.97438 * 13 12 11 15 15 C 1.50704 * 119.99976 * 359.96900 * 13 12 11 16 16 H 1.08996 * 110.12983 * 299.76296 * 15 13 12 17 17 C 1.54798 * 110.15209 * 61.46111 * 15 13 12 18 18 C 1.55329 * 104.99536 * 122.76802 * 17 15 13 19 19 C 1.53924 * 102.08485 * 22.19342 * 18 17 15 20 20 H 1.09002 * 111.01422 * 79.37618 * 19 18 17 21 21 C 1.52373 * 113.25795 * 204.94710 * 19 18 17 22 22 C 1.53628 * 107.60372 * 174.90504 * 21 19 18 23 23 C 1.52827 * 110.62032 * 303.58774 * 22 21 19 24 24 C 1.53641 * 110.63635 * 53.87068 * 23 22 21 25 25 N 1.45532 * 107.85418 * 302.86730 * 24 23 22 26 26 C 1.46964 * 118.81331 * 304.64551 * 12 11 10 27 27 C 1.46956 * 120.59188 * 331.96946 * 9 7 2 28 28 H 0.97004 * 119.99805 * 359.72339 * 1 2 3 29 29 H 1.09002 * 109.60877 * 244.53415 * 10 9 7 30 30 H 1.09000 * 109.61677 * 5.04719 * 10 9 7 31 31 H 1.08998 * 109.73975 * 289.84551 * 11 10 9 32 32 H 1.09004 * 109.53481 * 169.30045 * 11 10 9 33 33 H 1.09002 * 110.33496 * 241.64822 * 17 15 13 34 34 H 1.09000 * 110.33772 * 3.78147 * 17 15 13 35 35 H 1.09003 * 110.90608 * 140.38955 * 18 17 15 36 36 H 1.08999 * 110.90898 * 263.99674 * 18 17 15 37 37 H 1.09004 * 109.82964 * 294.42977 * 21 19 18 38 38 H 1.09002 * 109.83431 * 55.31448 * 21 19 18 39 39 H 1.09000 * 109.24907 * 63.88449 * 22 21 19 40 40 H 1.08998 * 109.24859 * 183.33652 * 22 21 19 41 41 H 1.09000 * 109.24137 * 174.16676 * 23 22 21 42 42 H 1.08998 * 109.24283 * 293.57078 * 23 22 21 43 43 H 1.09005 * 109.78214 * 62.45284 * 24 23 22 44 44 H 1.08997 * 109.78433 * 183.27740 * 24 23 22 45 45 H 1.08999 * 109.60688 * 295.48356 * 26 12 11 46 46 H 1.09003 * 109.60758 * 174.97491 * 26 12 11 47 47 H 1.09004 * 109.61155 * 354.95274 * 27 9 7 48 48 H 1.08998 * 109.61013 * 115.46491 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4919 2.0498 -1.4000 5 1 1.4506 2.6510 0.7060 6 1 3.5507 1.4385 0.6943 7 6 2.0102 -1.2021 -0.0057 8 1 3.0513 -1.2233 -0.2922 9 7 1.3748 -2.3613 0.3518 10 6 1.8102 -3.6529 -0.1975 11 6 2.1203 -4.5994 0.9747 12 7 0.9869 -4.5732 1.9099 13 6 0.3616 -5.7141 2.2619 14 8 -0.5723 -5.6802 3.0349 15 6 0.8228 -7.0320 1.6948 16 1 0.7385 -7.0229 0.6082 17 6 2.2868 -7.3098 2.1139 18 6 2.2409 -8.6746 2.8543 19 6 0.9454 -9.2968 2.3029 20 1 1.1072 -9.7236 1.3131 21 6 0.3230 -10.3220 3.2427 22 6 -1.0162 -10.7604 2.6308 23 6 -1.9202 -9.5515 2.3919 24 6 -1.1933 -8.4892 1.5532 25 7 0.0294 -8.1269 2.2544 26 6 0.5480 -3.2809 2.4549 27 6 0.2416 -2.3352 1.2871 28 1 -0.4850 0.8401 0.0041 29 1 1.0153 -4.0757 -0.8121 30 1 2.7063 -3.5104 -0.8014 31 1 3.0242 -4.2683 1.4859 32 1 2.2604 -5.6126 0.5978 33 1 2.9264 -7.3776 1.2339 34 1 2.6448 -6.5265 2.7820 35 1 3.1060 -9.2858 2.5973 36 1 2.1748 -8.5301 3.9326 37 1 0.9842 -11.1830 3.3409 38 1 0.1540 -9.8722 4.2211 39 1 -0.8302 -11.2631 1.6817 40 1 -1.5135 -11.4511 3.3118 41 1 -2.8182 -9.8731 1.8644 42 1 -2.2035 -9.1195 3.3517 43 1 -0.9490 -8.8972 0.5723 44 1 -1.8281 -7.6103 1.4403 45 1 1.3400 -2.8561 3.0716 46 1 -0.3502 -3.4234 3.0558 47 1 0.1015 -1.3220 1.6639 48 1 -0.6624 -2.6662 0.7759 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900775899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:45 Heat of formation + Delta-G solvation = -18.046578 kcal Electronic energy + Delta-G solvation = -27007.146142 eV Core-core repulsion = 23482.651276 eV Total energy + Delta-G solvation = -3524.494865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72601 -40.09656 -38.29759 -36.10526 -35.47993 -33.20985 -33.06584 -32.19348 -30.22663 -29.07354 -28.19958 -25.60158 -24.68012 -23.91914 -23.36166 -22.15073 -21.66148 -20.70270 -20.12833 -18.69315 -17.68347 -17.27614 -17.07019 -16.69661 -16.18565 -15.70504 -15.54137 -15.34363 -15.23376 -15.21308 -14.98056 -14.58848 -14.32228 -14.06190 -13.97122 -13.66852 -13.41057 -13.22444 -13.10712 -12.66948 -12.55022 -12.46649 -12.34605 -12.26133 -12.10207 -12.02973 -11.87651 -11.72147 -11.58786 -11.54010 -11.27179 -11.22525 -10.66982 -10.60572 -9.79357 -9.23874 -8.67485 -7.89492 -5.38281 1.47149 1.49723 1.59034 1.68768 1.96955 2.50363 2.96630 3.25443 3.44492 3.56141 3.57888 3.81217 3.91864 4.03489 4.11237 4.15074 4.23118 4.27762 4.32650 4.39124 4.40982 4.47606 4.50864 4.62123 4.65293 4.71708 4.79115 4.79624 4.88518 4.94329 4.96791 5.02372 5.04141 5.09924 5.14323 5.22131 5.23257 5.29021 5.35041 5.43790 5.52525 5.60026 5.67533 6.04551 6.23772 6.33699 6.58391 7.07538 7.28045 7.77593 8.31279 9.15814 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.033163 B = 0.003287 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.107234 B = 8515.229456 C = 8887.222719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.263 4.263 8 H 0.078 0.922 9 N -0.608 5.608 10 C 0.124 3.876 11 C 0.100 3.900 12 N -0.604 5.604 13 C 0.511 3.489 14 O -0.578 6.578 15 C 0.069 3.931 16 H 0.079 0.921 17 C -0.115 4.115 18 C -0.109 4.109 19 C 0.067 3.933 20 H 0.070 0.930 21 C -0.103 4.103 22 C -0.115 4.115 23 C -0.110 4.110 24 C 0.065 3.935 25 N -0.536 5.536 26 C 0.105 3.895 27 C 0.173 3.827 28 H 0.250 0.750 29 H 0.011 0.989 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.044 0.956 44 H 0.043 0.957 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.069 0.931 48 H -0.012 1.012 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.907 -23.042 3.198 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.393 4.393 8 H 0.095 0.905 9 N -0.332 5.332 10 C -0.002 4.002 11 C -0.023 4.023 12 N -0.337 5.337 13 C 0.300 3.700 14 O -0.457 6.457 15 C -0.043 4.043 16 H 0.096 0.904 17 C -0.154 4.154 18 C -0.147 4.147 19 C -0.040 4.040 20 H 0.088 0.912 21 C -0.140 4.140 22 C -0.152 4.152 23 C -0.148 4.148 24 C -0.063 4.063 25 N -0.261 5.261 26 C -0.020 4.020 27 C 0.046 3.954 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.006 0.994 Dipole moment (debyes) X Y Z Total from point charges 5.133 -22.727 4.045 23.648 hybrid contribution -0.353 1.617 -0.916 1.891 sum 4.781 -21.111 3.130 21.870 Atomic orbital electron populations 1.70200 1.06970 1.26020 1.55186 1.25873 0.95939 1.01847 1.01094 0.85243 0.78150 0.79273 0.77550 1.21108 1.22314 1.19068 1.19581 0.93424 0.85578 1.40688 0.90468 1.44263 1.36623 1.02819 1.49470 1.21603 0.98406 0.86061 0.94104 1.22543 0.87932 1.01436 0.90415 1.48123 1.33828 1.05952 1.45785 1.21239 0.81877 0.85972 0.80956 1.90607 1.30340 1.87221 1.37513 1.21915 0.95889 0.88740 0.97793 0.90384 1.22771 0.91547 0.98863 1.02181 1.22414 0.97358 0.94864 1.00030 1.22733 0.91610 0.90388 0.99231 0.91244 1.21522 0.96573 0.97828 0.98121 1.21551 0.95535 0.96621 1.01503 1.21549 0.98420 0.95167 0.99649 1.21902 0.91156 0.97936 0.95356 1.62217 1.05273 1.04719 1.53917 1.22036 0.99606 0.83645 0.96717 1.20843 0.88095 0.97715 0.88787 0.94094 0.97055 0.89897 0.90392 0.86883 0.87242 0.91414 0.87699 0.91676 0.89163 0.92618 0.91148 0.90861 0.90596 0.93287 0.93794 0.93876 0.91683 0.91332 0.91289 0.99425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.77 11.21 21.65 0.24 -55.53 16 2 C -0.05 -2.88 4.90 84.86 0.42 -2.46 16 3 Si 0.97 44.07 29.59 68.60 2.03 46.10 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.26 -13.97 9.58 84.03 0.80 -13.16 16 8 H 0.08 3.87 7.89 -2.91 -0.02 3.85 16 9 N -0.61 -29.98 2.96 -697.38 -2.07 -32.04 16 10 C 0.12 4.76 6.70 86.57 0.58 5.34 16 11 C 0.10 3.01 5.62 86.57 0.49 3.49 16 12 N -0.60 -22.02 2.93 -817.14 -2.40 -24.42 16 13 C 0.51 18.50 6.95 87.66 0.61 19.11 16 14 O -0.58 -25.81 15.88 -3.03 -0.05 -25.86 16 15 C 0.07 1.79 2.12 44.89 0.10 1.88 16 16 H 0.08 1.90 7.65 -2.39 -0.02 1.88 16 17 C -0.12 -2.14 4.93 32.01 0.16 -1.98 16 18 C -0.11 -1.70 6.61 31.71 0.21 -1.49 16 19 C 0.07 1.18 2.62 44.68 0.12 1.29 16 20 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 21 C -0.10 -1.60 5.67 30.60 0.17 -1.43 16 22 C -0.11 -1.73 5.94 30.75 0.18 -1.55 16 23 C -0.11 -2.25 6.06 30.75 0.19 -2.06 16 24 C 0.06 1.60 5.85 86.78 0.51 2.10 16 25 N -0.54 -13.68 3.79 -845.26 -3.21 -16.89 16 26 C 0.10 4.44 6.59 86.41 0.57 5.01 16 27 C 0.17 8.69 5.51 86.42 0.48 9.17 16 28 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 2.88 7.93 -2.39 -0.02 2.86 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.11 2.48 4.62 -2.38 -0.01 2.47 16 33 H 0.11 1.37 7.53 -2.39 -0.02 1.35 16 34 H 0.07 1.45 7.33 -2.39 -0.02 1.43 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.04 0.93 8.06 -2.38 -0.02 0.91 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.07 3.04 6.99 -2.39 -0.02 3.02 16 47 H 0.07 3.88 5.99 -2.38 -0.01 3.86 16 48 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 Total: -1.00 -71.44 359.53 1.05 -70.39 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.92 Total: 15.00 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 5.57 Total: 23.25 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -7.43 Total: -128.88 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -71.44 1.05 -70.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900775899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.342 kcal (2) G-P(sol) polarization free energy of solvation -71.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds