Wall clock time and date at job start Fri Apr 10 2020 22:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35902 * 116.99850 * 2 1 4 4 C 1.38728 * 120.05284 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94021 * 180.29367 * 4 3 2 6 6 C 1.38263 * 120.05633 * 359.43105 * 5 4 3 7 7 C 1.50702 * 119.94537 * 180.29790 * 6 5 4 8 8 N 1.46901 * 109.47128 * 270.29370 * 7 6 5 9 9 C 1.46906 * 110.99902 * 66.04662 * 8 7 6 10 10 C 1.52998 * 109.46956 * 62.72819 * 9 8 7 11 11 C 1.52998 * 109.47049 * 183.77822 * 10 9 8 12 12 O 1.42898 * 109.47551 * 180.02562 * 11 10 9 13 13 C 1.46892 * 111.00004 * 189.99718 * 8 7 6 14 14 C 1.53006 * 109.47190 * 164.44105 * 13 8 7 15 15 C 1.52999 * 109.47146 * 180.35288 * 14 13 8 16 16 C 1.50707 * 109.46837 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00139 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99670 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00432 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99687 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47172 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46969 * 120.00045 * 20 18 16 23 23 H 1.48498 * 109.46740 * 240.00266 * 20 18 16 24 24 C 1.38269 * 120.11211 * 0.58990 * 6 5 4 25 25 C 1.38149 * 120.05130 * 359.68456 * 24 6 5 26 26 H 1.09002 * 109.46921 * 60.00572 * 1 2 3 27 27 H 1.09006 * 109.46778 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47161 * 300.00148 * 1 2 3 29 29 H 1.08001 * 120.03308 * 0.02562 * 4 3 2 30 30 H 1.08006 * 119.97112 * 179.69626 * 5 4 3 31 31 H 1.08997 * 109.47232 * 30.29336 * 7 6 5 32 32 H 1.08997 * 109.47073 * 150.29573 * 7 6 5 33 33 H 1.08994 * 109.46980 * 182.73323 * 9 8 7 34 34 H 1.09003 * 109.46970 * 302.73037 * 9 8 7 35 35 H 1.09002 * 109.47424 * 303.77895 * 10 9 8 36 36 H 1.08998 * 109.47272 * 63.78003 * 10 9 8 37 37 H 1.09002 * 109.47068 * 300.00292 * 11 10 9 38 38 H 1.09003 * 109.47371 * 60.00126 * 11 10 9 39 39 H 0.96696 * 114.00350 * 179.97438 * 12 11 10 40 40 H 1.09002 * 109.47652 * 284.44216 * 13 8 7 41 41 H 1.09005 * 109.47471 * 44.44604 * 13 8 7 42 42 H 1.08999 * 109.46847 * 300.34909 * 14 13 8 43 43 H 1.08993 * 109.46834 * 60.34708 * 14 13 8 44 44 H 1.08999 * 109.46938 * 299.99565 * 15 14 13 45 45 H 1.08993 * 109.47727 * 59.99968 * 15 14 13 46 46 H 0.96995 * 120.00500 * 180.02562 * 19 18 16 47 47 H 1.08001 * 119.97245 * 179.70044 * 24 6 5 48 48 H 1.07998 * 120.02207 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5169 0.0067 6 6 3.3019 3.6758 0.0004 7 6 3.9860 5.0185 0.0003 8 7 4.2082 5.4550 1.3853 9 6 5.1663 4.5746 2.0674 10 6 6.5226 4.6546 1.3638 11 6 7.4939 3.6681 2.0151 12 8 8.7609 3.7432 1.3585 13 6 4.6538 6.8539 1.4313 14 6 4.5036 7.3904 2.8563 15 6 4.9594 8.8502 2.9024 16 6 4.8121 9.3784 4.3062 17 1 4.4310 8.7371 5.0872 18 6 5.1638 10.6802 4.5933 19 7 5.6283 11.4610 3.6424 20 14 4.9817 11.3347 6.3335 21 1 4.4418 10.2651 7.2107 22 1 6.3083 11.7687 6.8404 23 1 4.0497 12.4908 6.3325 24 6 1.9210 3.6048 0.0003 25 6 1.2915 2.3750 -0.0002 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 4.0209 0.3800 0.0005 30 1 5.1345 2.5751 0.0121 31 1 4.9440 4.9382 -0.5134 32 1 3.3580 5.7463 -0.5136 33 1 5.2757 4.8911 3.1046 34 1 4.8014 3.5479 2.0373 35 1 6.4009 4.4028 0.3103 36 1 6.9186 5.6663 1.4522 37 1 7.6156 3.9200 3.0687 38 1 7.0980 2.6564 1.9268 39 1 9.4276 3.1436 1.7204 40 1 5.6996 6.9124 1.1295 41 1 4.0457 7.4516 0.7522 42 1 3.4589 7.3263 3.1604 43 1 5.1165 6.7967 3.5345 44 1 6.0042 8.9143 2.5983 45 1 4.3466 9.4439 2.2243 46 1 5.8761 12.3767 3.8445 47 1 1.3341 4.5114 0.0002 48 1 0.2129 2.3201 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934507139.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:45 Heat of formation + Delta-G solvation = -95.981378 kcal Electronic energy + Delta-G solvation = -25158.756487 eV Core-core repulsion = 21598.589364 eV Total energy + Delta-G solvation = -3560.167123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.193 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.18069 -39.90020 -38.17925 -37.56729 -35.73450 -33.62053 -32.90814 -31.92025 -31.20230 -28.68994 -28.05320 -26.83271 -25.46528 -23.81008 -23.46839 -22.87914 -21.69549 -20.67402 -19.05133 -18.50115 -18.19031 -17.32507 -17.18162 -16.67825 -16.59721 -16.47966 -16.30448 -15.86882 -15.33180 -15.19875 -14.75366 -14.52597 -14.40849 -14.11623 -14.01963 -13.80821 -13.58873 -13.38607 -13.01592 -12.92150 -12.72140 -12.57429 -12.49524 -12.39618 -12.10627 -12.02312 -11.94038 -11.78827 -11.65095 -11.33367 -11.31972 -11.05380 -10.84739 -10.54530 -9.90250 -9.27519 -8.97634 -8.19377 -6.30122 0.41446 0.46689 1.39791 1.40025 1.53691 2.40959 2.41380 2.69430 3.13669 3.17900 3.37182 3.82293 3.89497 3.93192 3.99450 4.18386 4.23823 4.27338 4.33669 4.40822 4.41088 4.42476 4.45078 4.54685 4.59216 4.68902 4.72350 4.73501 4.78607 4.79856 4.85436 5.01428 5.05043 5.13241 5.18931 5.22594 5.31589 5.35471 5.43021 5.54616 5.72561 5.77202 5.83424 5.87984 6.10914 6.18752 6.29425 6.47824 6.87067 6.90420 7.38987 8.92745 Molecular weight = 307.19amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.002854 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.229335 B = 9807.906019 C =11091.358742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.113 3.887 4 C -0.162 4.162 5 C -0.075 4.075 6 C -0.116 4.116 7 C 0.091 3.909 8 N -0.530 5.530 9 C 0.058 3.942 10 C -0.157 4.157 11 C 0.082 3.918 12 O -0.597 6.597 13 C 0.062 3.938 14 C -0.085 4.085 15 C 0.026 3.974 16 C -0.539 4.539 17 H 0.058 0.942 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.964 3.036 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.277 1.277 24 C -0.068 4.068 25 C -0.210 4.210 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.061 0.939 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.397 0.603 40 H 0.032 0.968 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.046 0.954 44 H -0.012 1.012 45 H -0.008 1.008 46 H 0.263 0.737 47 H 0.131 0.869 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.925 -25.058 -8.524 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.067 3.933 4 C -0.180 4.180 5 C -0.094 4.094 6 C -0.117 4.117 7 C -0.036 4.036 8 N -0.253 5.253 9 C -0.070 4.070 10 C -0.196 4.196 11 C 0.004 3.996 12 O -0.406 6.406 13 C -0.065 4.065 14 C -0.123 4.123 15 C -0.011 4.011 16 C -0.578 4.578 17 H 0.076 0.924 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.203 1.203 24 C -0.086 4.086 25 C -0.229 4.229 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.079 0.921 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.247 0.753 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.006 0.994 45 H 0.010 0.990 46 H 0.072 0.928 47 H 0.149 0.851 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.575 -24.664 -8.661 26.954 hybrid contribution 0.921 0.732 0.653 1.345 sum -5.654 -23.932 -8.007 25.862 Atomic orbital electron populations 1.23313 0.76658 1.05454 1.02115 1.86034 1.23296 1.26904 1.88777 1.19217 0.92726 0.84546 0.96778 1.20565 0.91652 0.98898 1.06901 1.20994 1.00178 0.90894 0.97327 1.19670 0.93930 0.94368 1.03711 1.21071 0.99237 0.93977 0.89266 1.62296 1.45431 1.01838 1.15693 1.22133 0.88508 0.98270 0.98056 1.22154 0.96346 0.99720 1.01368 1.22090 0.83422 0.98819 0.95305 1.86445 1.23575 1.67820 1.62741 1.22100 0.98294 0.88331 0.97800 1.21327 1.00197 0.95516 0.95214 1.18966 0.94361 0.92338 0.95457 1.21713 1.42583 0.97269 0.96188 0.92368 1.25987 0.94817 0.97423 1.01710 1.70102 1.45096 1.07649 1.34610 0.85407 0.77929 0.78388 0.79387 1.18598 1.20357 1.20288 1.21003 0.94039 0.97623 0.95983 1.21415 1.00955 0.91876 1.08644 0.91793 0.86337 0.92074 0.84308 0.84716 0.93268 0.89893 0.91310 0.89135 0.90911 0.93274 0.93393 0.91407 0.75348 0.94973 0.91414 0.93087 0.93480 0.99382 0.98994 0.92803 0.85107 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.33 10.50 -92.45 -0.97 -7.31 16 3 C 0.11 2.30 6.69 22.50 0.15 2.46 16 4 C -0.16 -3.21 9.99 22.36 0.22 -2.99 16 5 C -0.08 -1.52 7.90 22.25 0.18 -1.34 16 6 C -0.12 -2.57 4.90 -19.85 -0.10 -2.67 16 7 C 0.09 2.21 4.92 85.56 0.42 2.63 16 8 N -0.53 -15.24 4.66 -900.79 -4.20 -19.44 16 9 C 0.06 1.51 4.81 86.30 0.42 1.93 16 10 C -0.16 -3.97 4.77 30.59 0.15 -3.83 16 11 C 0.08 1.71 7.05 71.98 0.51 2.22 16 12 O -0.60 -13.35 13.66 -148.98 -2.03 -15.39 16 13 C 0.06 2.18 4.82 86.31 0.42 2.59 16 14 C -0.08 -3.60 5.19 30.60 0.16 -3.44 16 15 C 0.03 1.43 4.97 29.85 0.15 1.58 16 16 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 19 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 20 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 C -0.07 -1.44 9.69 22.26 0.22 -1.23 16 25 C -0.21 -4.05 9.04 22.37 0.20 -3.85 16 26 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 27 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 29 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.14 2.39 7.24 -2.91 -0.02 2.37 16 31 H 0.05 1.16 5.96 -2.39 -0.01 1.14 16 32 H 0.08 1.96 7.81 -2.39 -0.02 1.94 16 33 H 0.07 1.97 6.65 -2.39 -0.02 1.95 16 34 H 0.09 2.07 5.95 -2.39 -0.01 2.06 16 35 H 0.07 1.77 5.60 -2.39 -0.01 1.75 16 36 H 0.05 1.54 6.39 -2.39 -0.02 1.53 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.40 4.83 9.12 -74.06 -0.68 4.16 16 40 H 0.03 1.16 5.89 -2.39 -0.01 1.15 16 41 H 0.07 2.36 7.82 -2.38 -0.02 2.34 16 42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.97 6.74 -2.39 -0.02 1.96 16 44 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 45 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 46 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 47 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 48 H 0.14 2.11 6.30 -2.91 -0.02 2.09 16 Total: -1.00 -71.33 379.87 0.27 -71.06 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.27 Total: 17.14 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 4.89 Total: -35.54 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -3.91 Total: -77.06 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -3.01 Total: -22.69 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -71.33 0.27 -71.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934507139.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.924 kcal (2) G-P(sol) polarization free energy of solvation -71.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds