Wall clock time and date at job start Fri Apr 10 2020 22:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47107 * 2 1 4 4 C 1.52999 * 109.47479 * 119.99755 * 2 1 3 5 5 C 1.50702 * 109.49870 * 58.00129 * 4 2 1 6 6 O 1.21282 * 119.99900 * 238.07374 * 5 4 2 7 7 N 1.34770 * 120.00470 * 58.07050 * 5 4 2 8 8 C 1.46499 * 120.00342 * 173.75075 * 7 5 4 9 9 C 1.50704 * 109.47046 * 90.00318 * 8 7 5 10 10 H 1.08007 * 119.99752 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00170 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00139 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00004 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47283 * 270.00556 * 13 11 9 15 15 H 1.48501 * 109.46729 * 30.00652 * 13 11 9 16 16 H 1.48497 * 109.46921 * 150.00166 * 13 11 9 17 17 C 1.46505 * 119.99744 * 353.75484 * 7 5 4 18 18 C 1.53000 * 109.46993 * 262.45203 * 17 7 5 19 19 C 1.47200 * 109.47218 * 185.49636 * 18 17 7 20 20 N 4.61881 * 103.66275 * 250.63374 * 2 1 3 21 21 C 1.53123 * 109.50547 * 178.07225 * 4 2 1 22 22 C 1.53197 * 109.11636 * 177.59940 * 21 4 2 23 23 C 1.53040 * 109.30364 * 302.37329 * 22 21 4 24 24 N 1.46852 * 109.51907 * 59.17574 * 23 22 21 25 25 C 1.46836 * 111.20094 * 298.26191 * 24 23 22 26 26 H 1.09005 * 109.47234 * 299.99849 * 1 2 3 27 27 H 1.08993 * 109.47370 * 59.99667 * 1 2 3 28 28 H 1.08997 * 109.47350 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47291 * 240.00665 * 2 1 3 30 30 H 1.09006 * 109.47453 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47278 * 300.00390 * 3 2 1 32 32 H 1.08998 * 109.47219 * 60.00225 * 3 2 1 33 33 H 1.08998 * 109.47334 * 330.00423 * 8 7 5 34 34 H 1.09005 * 109.47339 * 209.99654 * 8 7 5 35 35 H 0.96998 * 119.99668 * 179.97438 * 12 11 9 36 36 H 1.08998 * 109.47205 * 22.45517 * 17 7 5 37 37 H 1.08998 * 109.47073 * 142.45780 * 17 7 5 38 38 H 1.09000 * 109.47558 * 305.49981 * 18 17 7 39 39 H 1.09004 * 109.46862 * 65.49546 * 18 17 7 40 40 H 1.08991 * 109.52442 * 297.54469 * 21 4 2 41 41 H 1.09006 * 109.51660 * 57.73925 * 21 4 2 42 42 H 1.09001 * 109.49430 * 182.42546 * 22 21 4 43 43 H 1.09003 * 109.52900 * 62.34142 * 22 21 4 44 44 H 1.08997 * 109.46082 * 299.16499 * 23 22 21 45 45 H 1.08998 * 109.46671 * 179.19060 * 23 22 21 46 46 H 1.00898 * 110.99781 * 62.36017 * 24 23 22 47 47 H 1.09000 * 109.46416 * 301.72623 * 25 24 23 48 48 H 1.09000 * 109.46468 * 181.76276 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4980 -2.1271 1.2750 6 8 0.8344 -2.5040 2.2175 7 7 1.7507 -2.9657 0.2506 8 6 1.3425 -4.3701 0.3358 9 6 -0.0523 -4.5220 -0.2144 10 1 -0.5818 -3.6587 -0.5895 11 6 -0.6527 -5.7630 -0.2378 12 7 -1.8697 -5.8957 -0.7184 13 14 0.2630 -7.2560 0.4117 14 1 1.0336 -7.8829 -0.6920 15 1 1.1944 -6.8354 1.4891 16 1 -0.7112 -8.2366 0.9545 17 6 2.4337 -2.4728 -0.9481 18 6 1.3985 -2.1423 -2.0253 19 6 2.0885 -1.7732 -3.2720 20 7 2.6209 -1.4883 -4.2342 21 6 3.5705 -0.7638 1.2259 22 6 4.0734 -1.4339 2.5085 23 6 3.5480 -0.6628 3.7216 24 7 2.0797 -0.6514 3.6974 25 6 1.5736 0.0292 2.4988 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.3591 -4.6908 1.3774 34 1 2.0309 -4.9844 -0.2447 35 1 -2.2919 -6.7688 -0.7353 36 1 2.9997 -1.5748 -0.7004 37 1 3.1131 -3.2395 -1.3203 38 1 0.7683 -3.0137 -2.2031 39 1 0.7803 -1.3089 -1.6916 40 1 3.9059 -1.3345 0.3600 41 1 3.9622 0.2518 1.1681 42 1 5.1633 -1.4288 2.5183 43 1 3.7139 -2.4622 2.5474 44 1 3.9197 0.3613 3.6897 45 1 3.8924 -1.1458 4.6360 46 1 1.7097 -1.5876 3.7651 47 1 1.9546 1.0501 2.4726 48 1 0.4841 0.0489 2.5250 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160750336.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:32 Heat of formation + Delta-G solvation = 11.355938 kcal Electronic energy + Delta-G solvation = -28297.549681 eV Core-core repulsion = 24774.329804 eV Total energy + Delta-G solvation = -3523.219877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35958 -37.62261 -36.99817 -35.78686 -34.91785 -32.73693 -31.64886 -30.99596 -29.72912 -28.01719 -27.29090 -24.42260 -24.17543 -23.37603 -22.37547 -20.86709 -20.10454 -18.52405 -17.67918 -16.77195 -16.14355 -16.06121 -15.86724 -15.16433 -14.92750 -14.52362 -14.34484 -14.03346 -13.93768 -13.47443 -13.31717 -12.97792 -12.86443 -12.76703 -12.56207 -12.49011 -12.41233 -12.24599 -11.98733 -11.86322 -11.82238 -11.63305 -11.26027 -11.17733 -11.03393 -10.86737 -10.82995 -10.64760 -10.50198 -10.28752 -10.18251 -10.12279 -9.58388 -9.00167 -8.67053 -8.09737 -7.94775 -6.17064 -4.16536 2.80225 2.93516 3.18060 3.20960 3.29875 3.32407 3.56525 4.22228 4.32303 4.40872 4.57702 4.70301 4.77120 4.89161 5.04781 5.06857 5.13514 5.15915 5.19826 5.24086 5.30206 5.40179 5.49980 5.53780 5.63709 5.70099 5.77393 5.82638 5.85373 5.89843 5.93061 5.99149 6.00375 6.07490 6.17088 6.20259 6.27045 6.36194 6.49426 6.55112 6.84132 7.14061 7.25138 7.50823 7.68248 7.70460 8.05914 8.35740 8.79024 8.85672 9.43202 10.95428 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.006532 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.927867 B = 4285.557848 C = 5477.518543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.112 4.112 3 C -0.149 4.149 4 C -0.112 4.112 5 C 0.528 3.472 6 O -0.529 6.529 7 N -0.588 5.588 8 C 0.214 3.786 9 C -0.530 4.530 10 H 0.080 0.920 11 C 0.075 3.925 12 N -0.893 5.893 13 Si 0.871 3.129 14 H -0.276 1.276 15 H -0.265 1.265 16 H -0.284 1.284 17 C 0.101 3.899 18 C -0.074 4.074 19 C 0.218 3.782 20 N -0.451 5.451 21 C -0.119 4.119 22 C -0.161 4.161 23 C 0.057 3.943 24 N -0.689 5.689 25 C 0.085 3.915 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.139 0.861 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.362 0.638 47 H 0.075 0.925 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.941 12.233 3.364 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.131 4.131 3 C -0.206 4.206 4 C -0.117 4.117 5 C 0.315 3.685 6 O -0.405 6.405 7 N -0.318 5.318 8 C 0.093 3.907 9 C -0.568 4.568 10 H 0.098 0.902 11 C -0.128 4.128 12 N -0.531 5.531 13 Si 0.698 3.302 14 H -0.202 1.202 15 H -0.189 1.189 16 H -0.210 1.210 17 C -0.025 4.025 18 C -0.114 4.114 19 C -0.099 4.099 20 N -0.129 5.129 21 C -0.157 4.157 22 C -0.201 4.201 23 C -0.073 4.073 24 N -0.324 5.324 25 C -0.046 4.046 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.187 0.813 47 H 0.093 0.907 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.152 12.812 2.840 17.222 hybrid contribution 0.244 -1.818 -0.293 1.858 sum 11.397 10.994 2.547 16.038 Atomic orbital electron populations 1.22021 0.94259 1.03447 1.02045 1.21827 0.97011 0.96678 0.97562 1.21952 1.00902 0.95685 1.02091 1.21644 0.96512 0.94330 0.99231 1.20160 0.79620 0.86129 0.82608 1.90593 1.38311 1.76768 1.34871 1.47815 1.57584 1.11727 1.14707 1.19744 0.96264 0.76355 0.98305 1.21286 0.98288 0.95742 1.41509 0.90242 1.24839 0.94685 0.98697 0.94548 1.69879 1.13336 1.24298 1.45565 0.86927 0.80167 0.83288 0.79825 1.20193 1.18939 1.20994 1.21902 0.93807 1.01243 0.85501 1.20429 0.98835 1.06505 0.85674 1.29254 0.93399 0.92619 0.94648 1.81172 1.09829 1.10163 1.11693 1.21969 0.93179 1.01877 0.98627 1.22313 1.00984 1.00508 0.96250 1.21988 0.88911 0.99764 0.96625 1.60728 1.06637 1.26812 1.38183 1.21923 1.00754 0.96498 0.85391 0.91951 0.92357 0.91081 0.88569 0.92535 0.92515 0.92136 0.94123 0.95611 0.92499 0.88281 0.90169 0.84306 0.86278 0.90513 0.90608 0.91465 0.91728 0.91460 0.91177 0.81331 0.90705 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 7.17 37.16 0.27 -1.74 16 2 C -0.11 -1.24 1.57 -90.62 -0.14 -1.38 16 3 C -0.15 -1.33 8.48 37.16 0.32 -1.01 16 4 C -0.11 -1.40 0.06 -155.58 -0.01 -1.41 16 5 C 0.53 8.93 3.80 -10.99 -0.04 8.89 16 6 O -0.53 -11.10 13.51 5.56 0.08 -11.03 16 7 N -0.59 -10.02 2.47 -175.06 -0.43 -10.46 16 8 C 0.21 4.56 4.21 -5.19 -0.02 4.54 16 9 C -0.53 -13.41 8.87 -34.44 -0.31 -13.71 16 10 H 0.08 2.15 7.57 -52.48 -0.40 1.75 16 11 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 12 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 13 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.10 1.34 4.26 -4.04 -0.02 1.32 16 18 C -0.07 -0.99 4.94 -29.52 -0.15 -1.14 16 19 C 0.22 3.03 15.41 -20.76 -0.32 2.71 16 20 N -0.45 -7.14 18.54 42.15 0.78 -6.36 16 21 C -0.12 -1.27 4.26 -26.57 -0.11 -1.38 16 22 C -0.16 -1.81 5.82 -26.61 -0.15 -1.97 16 23 C 0.06 0.65 6.56 -3.83 -0.03 0.63 16 24 N -0.69 -9.60 6.82 -113.82 -0.78 -10.38 16 25 C 0.08 1.09 4.26 -3.84 -0.02 1.08 16 26 H 0.06 0.76 6.50 -51.93 -0.34 0.42 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.12 6.76 -51.93 -0.35 0.77 16 29 H 0.10 1.05 2.66 -51.93 -0.14 0.91 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 6.37 -51.93 -0.33 0.19 16 33 H 0.04 0.96 6.57 -51.93 -0.34 0.62 16 34 H 0.03 0.52 7.40 -51.93 -0.38 0.14 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.10 1.09 2.65 -51.93 -0.14 0.95 16 37 H 0.08 1.00 8.00 -51.93 -0.42 0.58 16 38 H 0.14 2.23 6.66 -51.93 -0.35 1.89 16 39 H 0.12 1.51 4.06 -51.93 -0.21 1.29 16 40 H 0.08 0.79 5.03 -51.93 -0.26 0.53 16 41 H 0.08 0.68 6.37 -51.93 -0.33 0.35 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.89 7.36 -51.93 -0.38 0.51 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.36 5.96 6.22 -39.29 -0.24 5.72 16 47 H 0.07 0.83 6.34 -51.93 -0.33 0.50 16 48 H 0.08 1.18 6.49 -51.93 -0.34 0.84 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -30.02 347.13 -6.74 -36.76 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.89 Total: 8.28 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -0.83 Total: -2.65 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.35 Total: -52.19 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.02 -6.74 -36.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160750336.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.115 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds