Wall clock time and date at job start Fri Apr 10 2020 22:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47178 * 2 1 4 4 C 1.52998 * 109.47178 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46883 * 179.97438 * 4 3 2 6 6 N 1.39933 * 125.75883 * 269.97265 * 5 4 3 7 7 C 1.30444 * 108.89667 * 179.77736 * 6 5 4 8 8 C 1.41292 * 108.02573 * 0.38565 * 7 6 5 9 9 C 1.47422 * 126.41899 * 179.88066 * 8 7 6 10 10 O 1.21607 * 120.00243 * 223.30337 * 9 8 7 11 11 N 1.34774 * 120.00122 * 43.29629 * 9 8 7 12 12 C 1.46499 * 120.00010 * 5.63654 * 11 9 8 13 13 C 1.50702 * 109.47406 * 264.49509 * 12 11 9 14 14 H 1.08001 * 119.99602 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00043 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00470 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99933 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46712 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47001 * 119.99524 * 17 15 13 20 20 H 1.48500 * 109.47008 * 239.99971 * 17 15 13 21 21 C 1.46498 * 120.00500 * 185.63583 * 11 9 8 22 22 C 1.52995 * 109.47470 * 125.22100 * 21 11 9 23 23 C 1.53001 * 109.47301 * 245.22993 * 21 11 9 24 24 C 1.34257 * 125.74706 * 90.00678 * 5 4 3 25 25 C 1.50703 * 126.29528 * 359.95258 * 24 5 4 26 26 H 1.09002 * 109.47513 * 299.99783 * 1 2 3 27 27 H 1.08999 * 109.47214 * 60.00016 * 1 2 3 28 28 H 1.09002 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46636 * 239.99958 * 2 1 3 30 30 H 1.08999 * 109.47214 * 119.99984 * 2 1 3 31 31 H 1.09002 * 109.46721 * 59.99732 * 3 2 1 32 32 H 1.08999 * 109.47035 * 300.00094 * 3 2 1 33 33 H 1.09004 * 109.46818 * 60.00470 * 4 3 2 34 34 H 1.08999 * 109.47214 * 299.99984 * 4 3 2 35 35 H 1.07999 * 125.99035 * 180.26343 * 7 6 5 36 36 H 1.09003 * 109.47013 * 24.49116 * 12 11 9 37 37 H 1.09001 * 109.47476 * 144.48716 * 12 11 9 38 38 H 0.96995 * 120.00587 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.46854 * 5.22180 * 21 11 9 40 40 H 1.08999 * 109.47500 * 180.02562 * 22 21 11 41 41 H 1.09000 * 109.47434 * 300.00400 * 22 21 11 42 42 H 1.09005 * 109.47017 * 60.00179 * 22 21 11 43 43 H 1.09005 * 109.46502 * 299.99402 * 23 21 11 44 44 H 1.08991 * 109.47352 * 59.99436 * 23 21 11 45 45 H 1.08999 * 109.47154 * 179.97438 * 23 21 11 46 46 H 1.09001 * 109.46949 * 270.00252 * 25 24 5 47 47 H 1.08991 * 109.46793 * 30.00017 * 25 24 5 48 48 H 1.09003 * 109.47210 * 150.00333 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 7 4.3318 3.5938 -1.1359 7 6 4.7430 4.7727 -0.7580 8 6 4.7568 4.7989 0.6546 9 6 5.1571 5.9346 1.5050 10 8 5.8597 5.7465 2.4796 11 7 4.7446 7.1815 1.2023 12 6 3.7997 7.3938 0.1032 13 6 4.5586 7.7392 -1.1522 14 1 5.6370 7.7955 -1.1329 15 6 3.8763 7.9845 -2.3248 16 7 2.5631 7.9166 -2.3481 17 14 4.8170 8.4135 -3.8807 18 1 6.2734 8.4256 -3.5909 19 1 4.5287 7.4013 -4.9283 20 1 4.3967 9.7549 -4.3593 21 6 5.2411 8.3246 1.9724 22 6 5.8574 9.3518 1.0207 23 6 4.0815 8.9677 2.7357 24 6 4.3193 3.5638 1.0893 25 6 4.1631 3.1269 2.5231 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.9286 -0.8892 34 1 3.9329 0.9288 0.8908 35 1 5.0255 5.5856 -1.4106 36 1 3.2221 6.4839 -0.0603 37 1 3.1252 8.2116 0.3567 38 1 2.0831 8.0888 -3.1731 39 1 5.9977 7.9850 2.6799 40 1 6.2272 10.2021 1.5937 41 1 6.6835 8.8936 0.4770 42 1 5.1008 9.6914 0.3133 43 1 3.3249 9.3073 2.0283 44 1 3.6426 8.2359 3.4138 45 1 4.4510 9.8179 3.3091 46 1 3.1567 3.3647 2.8678 47 1 4.3272 2.0518 2.5952 48 1 4.8922 3.6482 3.1434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533269717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:10 Heat of formation + Delta-G solvation = 15.035596 kcal Electronic energy + Delta-G solvation = -26640.357552 eV Core-core repulsion = 23117.297237 eV Total energy + Delta-G solvation = -3523.060315 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.87421 -38.69219 -35.99516 -35.62404 -33.12127 -32.59417 -31.64087 -31.01616 -28.29073 -27.35182 -26.72216 -26.44048 -24.11397 -22.93023 -22.18026 -21.37539 -20.32001 -19.15141 -17.92407 -16.67626 -16.54079 -15.88570 -15.56446 -15.15676 -14.88420 -14.40010 -13.99729 -13.82834 -13.62182 -13.38134 -13.18701 -12.90831 -12.79110 -12.58686 -12.48410 -12.28254 -12.09775 -11.73779 -11.61419 -11.50530 -11.46001 -11.43170 -11.24872 -11.18872 -10.91280 -10.78112 -10.75996 -10.63712 -10.25421 -10.16304 -9.85484 -9.52261 -8.97104 -8.73042 -8.51314 -7.88564 -7.55917 -6.14231 -4.19922 2.15750 2.84133 3.09619 3.24771 3.34519 3.37425 3.95231 4.16321 4.38628 4.61809 4.65504 4.85292 4.93525 5.02083 5.17102 5.22301 5.36340 5.37923 5.45882 5.55438 5.59583 5.68600 5.70774 5.77546 5.80511 5.92664 5.94341 6.00307 6.06807 6.09336 6.19547 6.22380 6.29275 6.34716 6.45307 6.52538 6.60230 6.83747 6.94402 7.16268 7.34182 7.37124 7.42353 7.72282 7.81162 8.13559 8.30044 8.50084 8.87204 9.18454 9.45640 10.91639 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.005008 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.549960 B = 5589.195398 C = 7038.424750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.138 4.138 4 C 0.134 3.866 5 N -0.372 5.372 6 N -0.314 5.314 7 C 0.112 3.888 8 C -0.273 4.273 9 C 0.595 3.405 10 O -0.583 6.583 11 N -0.586 5.586 12 C 0.237 3.763 13 C -0.534 4.534 14 H 0.066 0.934 15 C 0.068 3.932 16 N -0.884 5.884 17 Si 0.887 3.113 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.139 3.861 22 C -0.153 4.153 23 C -0.157 4.157 24 C 0.123 3.877 25 C -0.094 4.094 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.213 0.787 36 H 0.041 0.959 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 -10.441 6.774 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.177 4.177 4 C 0.012 3.988 5 N -0.152 5.152 6 N -0.133 5.133 7 C -0.075 4.075 8 C -0.288 4.288 9 C 0.384 3.616 10 O -0.465 6.465 11 N -0.315 5.315 12 C 0.117 3.883 13 C -0.572 4.572 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.522 5.522 17 Si 0.714 3.286 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.035 3.965 22 C -0.211 4.211 23 C -0.215 4.215 24 C -0.008 4.008 25 C -0.152 4.152 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.229 0.771 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.717 -11.381 6.123 13.037 hybrid contribution 0.374 0.886 -0.524 1.095 sum -1.343 -10.495 5.600 11.971 Atomic orbital electron populations 1.21754 0.95459 1.01547 1.02209 1.21439 0.96344 0.95845 1.02133 1.22043 0.94155 0.97638 1.03819 1.21634 0.94657 0.78605 1.03866 1.48395 1.51237 1.11820 1.03725 1.77214 1.24073 1.05252 1.06724 1.25043 0.93518 0.94607 0.94336 1.19968 1.19347 0.95136 0.94338 1.17317 0.78914 0.82449 0.82946 1.90617 1.40757 1.85326 1.29831 1.48131 1.44995 1.04494 1.33919 1.19409 0.87792 0.98016 0.83046 1.21571 0.93931 1.48015 0.93687 0.91565 1.24933 0.94754 0.95049 0.98828 1.69929 1.06316 1.48164 1.27747 0.86609 0.80391 0.78208 0.83392 1.19451 1.20764 1.20932 1.20805 0.95775 0.86606 0.93267 1.22137 1.01881 0.97394 0.99651 1.22111 0.99304 1.00036 1.00073 1.21217 0.97866 0.91154 0.90526 1.20529 1.03868 1.01313 0.89536 0.92644 0.92501 0.92706 0.91686 0.91854 0.91343 0.90599 0.88948 0.89485 0.77123 0.94121 0.94878 0.92634 0.89833 0.93638 0.92727 0.90130 0.91892 0.93163 0.92524 0.90545 0.91556 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.14 -1.54 5.54 -26.73 -0.15 -1.69 16 4 C 0.13 1.62 6.21 -4.04 -0.03 1.59 16 5 N -0.37 -6.38 3.58 -56.60 -0.20 -6.59 16 6 N -0.31 -6.51 12.50 30.86 0.39 -6.13 16 7 C 0.11 2.46 9.94 -16.98 -0.17 2.29 16 8 C -0.27 -5.79 4.94 -105.07 -0.52 -6.31 16 9 C 0.59 13.18 7.37 -12.52 -0.09 13.08 16 10 O -0.58 -13.49 15.19 5.27 0.08 -13.41 16 11 N -0.59 -12.64 2.42 -168.73 -0.41 -13.04 16 12 C 0.24 5.62 4.16 -5.19 -0.02 5.59 16 13 C -0.53 -13.14 4.77 -34.44 -0.16 -13.31 16 14 H 0.07 1.65 6.94 -52.49 -0.36 1.29 16 15 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.88 -23.99 13.29 55.43 0.74 -23.26 16 17 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.14 2.65 3.23 -67.93 -0.22 2.43 16 22 C -0.15 -2.78 8.13 37.16 0.30 -2.47 16 23 C -0.16 -2.61 9.25 37.16 0.34 -2.27 16 24 C 0.12 2.21 7.00 -81.60 -0.57 1.64 16 25 C -0.09 -1.31 9.92 36.01 0.36 -0.95 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 0.83 7.02 -51.93 -0.36 0.46 16 35 H 0.21 4.97 5.37 -52.49 -0.28 4.68 16 36 H 0.04 1.05 6.05 -51.93 -0.31 0.74 16 37 H 0.03 0.83 6.72 -51.93 -0.35 0.48 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.08 1.62 6.95 -51.93 -0.36 1.26 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 42 H 0.08 1.62 6.68 -51.93 -0.35 1.27 16 43 H 0.06 1.11 6.88 -51.93 -0.36 0.75 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.07 0.71 7.05 -51.93 -0.37 0.35 16 48 H 0.10 1.52 6.85 -51.93 -0.36 1.17 16 LS Contribution 379.82 15.07 5.72 5.72 Total: -1.00 -29.55 379.82 -7.59 -37.14 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.07 Total: 5.19 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.81 Total: -0.77 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.51 Total: -49.01 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.55 -7.59 -37.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533269717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.177 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds