Wall clock time and date at job start Fri Apr 10 2020 22:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47178 * 2 1 4 4 C 1.52998 * 109.47178 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46883 * 179.97438 * 4 3 2 6 6 N 1.39933 * 125.75883 * 269.97265 * 5 4 3 7 7 C 1.30444 * 108.89667 * 179.77736 * 6 5 4 8 8 C 1.41292 * 108.02573 * 0.38565 * 7 6 5 9 9 C 1.47422 * 126.41899 * 179.88066 * 8 7 6 10 10 O 1.21607 * 120.00243 * 223.30337 * 9 8 7 11 11 N 1.34774 * 120.00122 * 43.29629 * 9 8 7 12 12 C 1.46499 * 120.00010 * 5.63654 * 11 9 8 13 13 C 1.50702 * 109.47406 * 264.49509 * 12 11 9 14 14 H 1.08001 * 119.99602 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00043 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00470 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99933 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46712 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47001 * 119.99524 * 17 15 13 20 20 H 1.48500 * 109.47008 * 239.99971 * 17 15 13 21 21 C 1.46498 * 120.00500 * 185.63583 * 11 9 8 22 22 C 1.52995 * 109.47470 * 125.22100 * 21 11 9 23 23 C 1.53001 * 109.47301 * 245.22993 * 21 11 9 24 24 C 1.34257 * 125.74706 * 90.00678 * 5 4 3 25 25 C 1.50703 * 126.29528 * 359.95258 * 24 5 4 26 26 H 1.09002 * 109.47513 * 299.99783 * 1 2 3 27 27 H 1.08999 * 109.47214 * 60.00016 * 1 2 3 28 28 H 1.09002 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46636 * 239.99958 * 2 1 3 30 30 H 1.08999 * 109.47214 * 119.99984 * 2 1 3 31 31 H 1.09002 * 109.46721 * 59.99732 * 3 2 1 32 32 H 1.08999 * 109.47035 * 300.00094 * 3 2 1 33 33 H 1.09004 * 109.46818 * 60.00470 * 4 3 2 34 34 H 1.08999 * 109.47214 * 299.99984 * 4 3 2 35 35 H 1.07999 * 125.99035 * 180.26343 * 7 6 5 36 36 H 1.09003 * 109.47013 * 24.49116 * 12 11 9 37 37 H 1.09001 * 109.47476 * 144.48716 * 12 11 9 38 38 H 0.96995 * 120.00587 * 180.02562 * 16 15 13 39 39 H 1.09005 * 109.46854 * 5.22180 * 21 11 9 40 40 H 1.08999 * 109.47500 * 180.02562 * 22 21 11 41 41 H 1.09000 * 109.47434 * 300.00400 * 22 21 11 42 42 H 1.09005 * 109.47017 * 60.00179 * 22 21 11 43 43 H 1.09005 * 109.46502 * 299.99402 * 23 21 11 44 44 H 1.08991 * 109.47352 * 59.99436 * 23 21 11 45 45 H 1.08999 * 109.47154 * 179.97438 * 23 21 11 46 46 H 1.09001 * 109.46949 * 270.00252 * 25 24 5 47 47 H 1.08991 * 109.46793 * 30.00017 * 25 24 5 48 48 H 1.09003 * 109.47210 * 150.00333 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 7 4.3318 3.5938 -1.1359 7 6 4.7430 4.7727 -0.7580 8 6 4.7568 4.7989 0.6546 9 6 5.1571 5.9346 1.5050 10 8 5.8597 5.7465 2.4796 11 7 4.7446 7.1815 1.2023 12 6 3.7997 7.3938 0.1032 13 6 4.5586 7.7392 -1.1522 14 1 5.6370 7.7955 -1.1329 15 6 3.8763 7.9845 -2.3248 16 7 2.5631 7.9166 -2.3481 17 14 4.8170 8.4135 -3.8807 18 1 6.2734 8.4256 -3.5909 19 1 4.5287 7.4013 -4.9283 20 1 4.3967 9.7549 -4.3593 21 6 5.2411 8.3246 1.9724 22 6 5.8574 9.3518 1.0207 23 6 4.0815 8.9677 2.7357 24 6 4.3193 3.5638 1.0893 25 6 4.1631 3.1269 2.5231 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.9286 -0.8892 34 1 3.9329 0.9288 0.8908 35 1 5.0255 5.5856 -1.4106 36 1 3.2221 6.4839 -0.0603 37 1 3.1252 8.2116 0.3567 38 1 2.0831 8.0888 -3.1731 39 1 5.9977 7.9850 2.6799 40 1 6.2272 10.2021 1.5937 41 1 6.6835 8.8936 0.4770 42 1 5.1008 9.6914 0.3133 43 1 3.3249 9.3073 2.0283 44 1 3.6426 8.2359 3.4138 45 1 4.4510 9.8179 3.3091 46 1 3.1567 3.3647 2.8678 47 1 4.3272 2.0518 2.5952 48 1 4.8922 3.6482 3.1434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533269717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:09 Heat of formation + Delta-G solvation = -0.917430 kcal Electronic energy + Delta-G solvation = -26641.049327 eV Core-core repulsion = 23117.297237 eV Total energy + Delta-G solvation = -3523.752090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.37286 -40.36101 -37.34430 -36.92442 -34.89324 -33.94808 -33.16488 -32.39771 -29.41826 -29.24489 -28.09427 -27.90120 -25.19030 -24.84569 -23.71240 -22.18633 -21.79227 -20.56188 -19.57258 -18.54012 -18.22985 -17.27522 -16.86593 -16.45311 -16.37529 -15.99370 -15.59629 -15.17982 -14.85185 -14.69459 -14.53420 -14.33146 -14.02898 -13.92847 -13.70458 -13.67302 -13.46676 -13.25804 -13.09321 -13.01835 -12.85178 -12.69755 -12.59936 -12.34909 -12.29986 -12.22759 -12.01444 -11.99116 -11.71388 -11.54224 -11.50929 -11.38818 -10.71487 -10.50822 -10.16450 -9.48542 -9.27149 -8.14207 -6.24364 0.70626 1.39741 1.40765 1.46055 1.54135 1.56186 2.28451 2.38141 2.59548 3.15786 3.59097 3.67459 3.83305 3.93952 4.05492 4.11466 4.21345 4.31901 4.33964 4.36918 4.46908 4.52475 4.61694 4.66353 4.73594 4.77018 4.83503 4.87992 4.91291 4.94985 4.98729 5.05068 5.06578 5.13529 5.17455 5.22389 5.24545 5.30838 5.43160 5.48299 5.60371 5.66344 5.77275 6.00006 6.11458 6.15257 6.66952 6.74254 6.91636 7.38427 7.51107 8.91472 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.005008 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.549960 B = 5589.195398 C = 7038.424750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.131 4.131 4 C 0.122 3.878 5 N -0.360 5.360 6 N -0.336 5.336 7 C 0.095 3.905 8 C -0.313 4.313 9 C 0.592 3.408 10 O -0.596 6.596 11 N -0.589 5.589 12 C 0.260 3.740 13 C -0.521 4.521 14 H 0.060 0.940 15 C 0.028 3.972 16 N -0.918 5.918 17 Si 0.942 3.058 18 H -0.266 1.266 19 H -0.285 1.285 20 H -0.279 1.279 21 C 0.131 3.869 22 C -0.144 4.144 23 C -0.148 4.148 24 C 0.138 3.862 25 C -0.090 4.090 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.188 0.812 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.264 0.736 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.039 0.961 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.107 0.893 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 -12.006 8.178 14.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.170 4.170 4 C 0.003 3.997 5 N -0.139 5.139 6 N -0.156 5.156 7 C -0.091 4.091 8 C -0.328 4.328 9 C 0.382 3.618 10 O -0.481 6.481 11 N -0.318 5.318 12 C 0.139 3.861 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.173 4.173 16 N -0.557 5.557 17 Si 0.768 3.232 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.205 1.205 21 C 0.028 3.972 22 C -0.201 4.201 23 C -0.206 4.206 24 C 0.005 3.995 25 C -0.148 4.148 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.119 0.881 34 H 0.145 0.855 35 H 0.205 0.795 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.126 0.874 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.448 -12.947 7.521 15.043 hybrid contribution 0.277 1.261 -0.905 1.577 sum -1.171 -11.685 6.617 13.479 Atomic orbital electron populations 1.21777 0.95549 1.02354 1.01527 1.21416 0.96187 0.93768 1.03618 1.21976 0.93403 0.99433 1.02150 1.22183 0.95226 0.76040 1.06271 1.48770 1.49618 1.13011 1.02531 1.77091 1.24532 1.05291 1.08707 1.24640 0.94909 0.94834 0.94715 1.20083 1.22200 0.96546 0.93926 1.17502 0.78624 0.82790 0.82891 1.90585 1.41392 1.85554 1.30520 1.48168 1.44639 1.05405 1.33627 1.18949 0.87607 0.96019 0.83484 1.21603 0.93485 1.46783 0.94119 0.92185 1.25523 0.95291 0.95187 1.01277 1.70025 1.07582 1.49732 1.28356 0.85742 0.79459 0.77790 0.80211 1.18971 1.21136 1.20492 1.21063 0.96734 0.86097 0.93334 1.22037 1.00565 0.98205 0.99331 1.22031 0.97966 1.00930 0.99640 1.21793 0.95347 0.89973 0.92422 1.20662 1.04351 1.03698 0.86087 0.92742 0.93863 0.91143 0.91038 0.89473 0.91628 0.93740 0.88107 0.85516 0.79517 0.96506 0.96396 0.92704 0.89916 0.90088 0.94220 0.92312 0.93271 0.93280 0.89224 0.88857 0.87412 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.11 -1.54 5.93 30.59 0.18 -1.36 16 3 C -0.13 -2.69 5.54 30.59 0.17 -2.52 16 4 C 0.12 2.62 6.21 86.38 0.54 3.16 16 5 N -0.36 -11.97 3.58 -332.99 -1.19 -13.16 16 6 N -0.34 -14.24 12.50 -56.28 -0.70 -14.94 16 7 C 0.10 4.36 9.94 85.65 0.85 5.21 16 8 C -0.31 -13.51 4.94 -20.15 -0.10 -13.61 16 9 C 0.59 26.71 7.37 86.66 0.64 27.35 16 10 O -0.60 -27.69 15.19 -4.05 -0.06 -27.75 16 11 N -0.59 -26.03 2.42 -806.00 -1.95 -27.98 16 12 C 0.26 12.82 4.16 85.63 0.36 13.18 16 13 C -0.52 -26.58 4.77 25.60 0.12 -26.46 16 14 H 0.06 3.10 6.94 -2.91 -0.02 3.08 16 15 C 0.03 1.45 5.46 84.65 0.46 1.92 16 16 N -0.92 -51.33 13.29 21.44 0.28 -51.05 16 17 Si 0.94 42.30 29.54 68.60 2.03 44.32 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 C 0.13 4.94 3.23 44.99 0.15 5.08 16 22 C -0.14 -5.16 8.13 71.98 0.59 -4.58 16 23 C -0.15 -4.77 9.25 71.98 0.67 -4.11 16 24 C 0.14 4.81 7.00 42.14 0.30 5.10 16 25 C -0.09 -2.25 9.92 71.24 0.71 -1.54 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.13 1.78 7.02 -2.39 -0.02 1.76 16 35 H 0.19 9.35 5.37 -2.91 -0.02 9.33 16 36 H 0.02 0.92 6.05 -2.39 -0.01 0.90 16 37 H 0.02 0.94 6.72 -2.39 -0.02 0.92 16 38 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 39 H 0.08 3.16 6.95 -2.38 -0.02 3.15 16 40 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 41 H 0.04 1.51 7.66 -2.39 -0.02 1.49 16 42 H 0.06 2.37 6.68 -2.38 -0.02 2.35 16 43 H 0.05 1.72 6.88 -2.38 -0.02 1.70 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.11 1.79 7.05 -2.39 -0.02 1.77 16 48 H 0.08 2.43 6.85 -2.39 -0.02 2.41 16 Total: -1.00 -66.68 379.82 5.67 -61.01 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.93 Total: 24.27 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 6.33 Total: 5.28 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -3.56 Total: -107.13 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.06 Total: -27.75 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -66.68 5.67 -61.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533269717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.097 kcal (2) G-P(sol) polarization free energy of solvation -66.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds