Wall clock time and date at job start Fri Apr 10 2020 22:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 N 1.46507 * 109.47164 * 175.02483 * 3 2 1 5 5 N 1.28436 * 125.19236 * 274.79713 * 4 3 2 6 6 C 1.30859 * 110.92663 * 179.97438 * 5 4 3 7 7 C 1.39672 * 107.86419 * 359.73151 * 6 5 4 8 8 C 1.36600 * 125.18504 * 94.79091 * 4 3 2 9 9 C 1.47166 * 126.88775 * 359.97438 * 8 4 3 10 10 O 1.21628 * 119.99930 * 340.29004 * 9 8 4 11 11 N 1.34773 * 119.99717 * 160.00996 * 9 8 4 12 12 C 1.46497 * 119.99719 * 186.92364 * 11 9 8 13 13 C 1.50706 * 109.47365 * 89.99978 * 12 11 9 14 14 H 1.08001 * 119.99646 * 359.97438 * 13 12 11 15 15 C 1.37869 * 120.00068 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00574 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99876 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47007 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47117 * 119.99770 * 17 15 13 20 20 H 1.48507 * 109.46788 * 239.99602 * 17 15 13 21 21 C 1.46498 * 120.00413 * 6.92023 * 11 9 8 22 22 C 1.53007 * 109.46943 * 96.94205 * 21 11 9 23 23 C 1.52997 * 109.46767 * 64.83382 * 22 21 11 24 24 C 1.52994 * 109.47261 * 184.83504 * 22 21 11 25 25 C 1.53001 * 109.46928 * 304.84006 * 22 21 11 26 26 H 1.09008 * 109.47051 * 184.98762 * 1 2 3 27 27 H 1.09001 * 109.47103 * 304.97884 * 1 2 3 28 28 H 1.08997 * 109.47121 * 64.98442 * 1 2 3 29 29 H 1.08990 * 109.47225 * 239.99770 * 2 1 3 30 30 H 1.09009 * 109.47175 * 119.99832 * 2 1 3 31 31 H 1.09004 * 109.47284 * 55.03086 * 3 2 1 32 32 H 1.08990 * 109.47163 * 295.02628 * 3 2 1 33 33 H 1.08010 * 126.07094 * 180.02562 * 6 5 4 34 34 H 1.07994 * 127.32562 * 180.27190 * 7 6 5 35 35 H 1.08999 * 109.47231 * 209.99721 * 12 11 9 36 36 H 1.09004 * 109.47367 * 330.00448 * 12 11 9 37 37 H 0.96992 * 120.00723 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.47403 * 216.94301 * 21 11 9 39 39 H 1.09005 * 109.47108 * 336.94688 * 21 11 9 40 40 H 1.09005 * 109.46985 * 60.00174 * 23 22 21 41 41 H 1.09001 * 109.46996 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47564 * 300.00410 * 23 22 21 43 43 H 1.09005 * 109.47089 * 65.01582 * 24 22 21 44 44 H 1.08996 * 109.47337 * 185.01861 * 24 22 21 45 45 H 1.09004 * 109.47205 * 305.02095 * 24 22 21 46 46 H 1.08994 * 109.47474 * 58.08134 * 25 22 21 47 47 H 1.09004 * 109.46710 * 178.08937 * 25 22 21 48 48 H 1.09004 * 109.46732 * 298.08138 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4443 0.1198 5 7 4.1522 1.3877 1.2248 6 6 5.4425 1.4063 1.0076 7 6 5.6436 1.4762 -0.3728 8 6 4.3757 1.5063 -0.9269 9 6 4.0384 1.5818 -2.3574 10 8 2.9360 1.2401 -2.7411 11 7 4.9493 2.0348 -3.2414 12 6 4.5679 2.2537 -4.6388 13 6 4.0719 3.6666 -4.8088 14 1 4.0432 4.3345 -3.9605 15 6 3.6537 4.1062 -6.0468 16 7 3.6881 3.2928 -7.0797 17 14 3.0396 5.8578 -6.2575 18 1 3.1009 6.5641 -4.9528 19 1 3.8931 6.5662 -7.2450 20 1 1.6361 5.8353 -6.7423 21 6 6.3207 2.3083 -2.8050 22 6 7.2081 1.1041 -3.1268 23 6 7.2908 0.9225 -4.6437 24 6 8.6112 1.3396 -2.5641 25 6 6.6094 -0.1540 -2.4945 26 1 -0.3633 -1.0238 0.0894 27 1 -0.3633 0.5891 0.8420 28 1 -0.3633 0.4345 -0.9312 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.6057 1.9814 0.8422 32 1 1.7512 1.9299 -0.9311 33 1 6.2150 1.3691 1.7616 34 1 6.5877 1.5039 -0.8964 35 1 5.4336 2.0929 -5.2812 36 1 3.7770 1.5556 -4.9133 37 1 3.3936 3.6019 -7.9505 38 1 6.6991 3.1879 -3.3257 39 1 6.3306 2.4900 -1.7303 40 1 7.7172 1.8188 -5.0942 41 1 7.9233 0.0649 -4.8730 42 1 6.2912 0.7548 -5.0446 43 1 8.5641 1.3802 -1.4758 44 1 9.2667 0.5240 -2.8693 45 1 9.0024 2.2825 -2.9462 46 1 5.5970 -0.3027 -2.8698 47 1 7.2231 -1.0172 -2.7521 48 1 6.5819 -0.0381 -1.4110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597161011.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:41 Heat of formation + Delta-G solvation = 57.841694 kcal Electronic energy + Delta-G solvation = -27453.502738 eV Core-core repulsion = 23932.298635 eV Total energy + Delta-G solvation = -3521.204103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.41546 -39.34436 -37.23321 -35.25365 -33.91534 -32.54613 -31.47261 -30.86824 -27.68192 -27.05570 -26.88256 -26.48656 -25.66736 -23.58838 -22.04451 -21.83170 -20.69882 -19.19743 -18.68982 -16.72560 -16.47245 -16.13445 -15.67245 -15.30894 -15.06792 -14.73311 -14.57349 -14.31561 -13.96203 -13.45778 -13.29005 -13.10722 -12.96871 -12.57335 -12.37297 -12.13412 -12.07557 -11.93625 -11.83185 -11.46256 -11.42918 -11.26537 -11.13412 -11.02937 -10.85914 -10.77656 -10.61940 -10.53129 -10.23446 -10.19205 -9.78610 -9.54970 -9.19081 -8.93928 -8.62490 -8.45111 -7.66671 -6.08544 -4.13116 1.68739 2.64449 2.82057 3.26381 3.34258 3.37996 3.72125 3.90823 4.40748 4.67626 4.85088 4.89264 5.05917 5.06962 5.08060 5.19744 5.25266 5.30451 5.42734 5.44679 5.58722 5.63968 5.68728 5.74636 5.77834 5.81775 5.89427 5.97713 6.02155 6.04672 6.14923 6.15450 6.21055 6.24202 6.30702 6.44064 6.46031 6.63935 6.69645 6.74831 6.97652 7.08417 7.38534 7.48657 7.87592 8.18911 8.24305 8.35442 8.80608 8.97327 9.51739 10.99172 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.010383 B = 0.006079 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.001064 B = 4605.256709 C = 6326.370874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.120 3.880 4 N -0.259 5.259 5 N -0.290 5.290 6 C -0.011 4.011 7 C -0.227 4.227 8 C -0.013 4.013 9 C 0.576 3.424 10 O -0.542 6.542 11 N -0.569 5.569 12 C 0.237 3.763 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.080 3.920 22 C -0.085 4.085 23 C -0.147 4.147 24 C -0.140 4.140 25 C -0.157 4.157 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.181 0.819 34 H 0.188 0.812 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -5.542 13.055 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.000 4.000 4 N -0.046 5.046 5 N -0.122 5.122 6 C -0.187 4.187 7 C -0.254 4.254 8 C -0.142 4.142 9 C 0.362 3.638 10 O -0.421 6.421 11 N -0.298 5.298 12 C 0.119 3.881 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.044 4.044 22 C -0.087 4.087 23 C -0.204 4.204 24 C -0.198 4.198 25 C -0.214 4.214 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.198 0.802 34 H 0.204 0.796 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.779 -5.757 13.445 15.106 hybrid contribution 0.364 1.063 -0.894 1.435 sum 4.143 -4.694 12.551 14.026 Atomic orbital electron populations 1.21662 0.94267 1.02133 1.02358 1.21797 0.96813 0.95246 1.03246 1.22196 0.73017 0.99639 1.05191 1.45747 1.07484 1.49400 1.01942 1.73095 1.07408 1.20645 1.11072 1.23542 0.92483 1.06638 0.96085 1.23135 0.97803 1.10004 0.94481 1.21898 0.90314 1.10466 0.91564 1.16888 0.85022 0.78960 0.82942 1.90757 1.22004 1.49785 1.79545 1.47847 1.08689 1.61652 1.11636 1.19633 0.97350 0.97072 0.74066 1.21475 1.43272 0.97125 0.94787 0.92475 1.24899 0.95531 0.97758 0.95728 1.69929 1.47554 1.35350 1.00346 0.86480 0.78608 0.84487 0.78092 1.19839 1.20895 1.20895 1.22481 0.82263 0.97202 1.02440 1.20955 0.94912 0.95887 0.96910 1.22102 1.03153 1.01005 0.94184 1.21848 0.95730 1.01867 1.00305 1.22277 1.01172 0.96635 1.01327 0.92149 0.92619 0.91820 0.90443 0.91609 0.89000 0.86807 0.80201 0.79601 0.93018 0.93749 0.92735 0.90159 0.87987 0.92488 0.93615 0.90643 0.92771 0.92526 0.92340 0.92484 0.93202 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.13 -1.77 6.26 -26.73 -0.17 -1.93 16 3 C 0.12 1.77 5.79 -4.04 -0.02 1.75 16 4 N -0.26 -4.29 3.35 -57.14 -0.19 -4.48 16 5 N -0.29 -4.52 11.90 30.59 0.36 -4.16 16 6 C -0.01 -0.15 12.03 -17.43 -0.21 -0.36 16 7 C -0.23 -3.27 6.36 -38.98 -0.25 -3.52 16 8 C -0.01 -0.23 6.50 -82.06 -0.53 -0.77 16 9 C 0.58 12.08 5.98 -12.64 -0.08 12.00 16 10 O -0.54 -12.97 14.63 5.25 0.08 -12.89 16 11 N -0.57 -11.73 1.91 -176.42 -0.34 -12.07 16 12 C 0.24 5.92 4.34 -5.19 -0.02 5.90 16 13 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 14 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 21 C 0.08 1.30 4.37 -4.04 -0.02 1.28 16 22 C -0.09 -1.18 0.59 -154.51 -0.09 -1.28 16 23 C -0.15 -2.28 7.36 37.16 0.27 -2.00 16 24 C -0.14 -1.49 8.35 37.15 0.31 -1.18 16 25 C -0.16 -2.20 7.16 37.16 0.27 -1.93 16 26 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.11 1.91 6.57 -51.93 -0.34 1.57 16 33 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.19 2.34 2.40 -52.49 -0.13 2.22 16 35 H 0.05 1.28 5.16 -51.93 -0.27 1.01 16 36 H 0.04 1.26 7.34 -51.93 -0.38 0.88 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 39 H 0.10 1.51 3.52 -51.93 -0.18 1.32 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.40 5.35 -51.93 -0.28 1.12 16 43 H 0.05 0.50 7.18 -51.93 -0.37 0.12 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.97 6.48 -51.93 -0.34 0.63 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.90 4.62 -51.93 -0.24 0.66 16 LS Contribution 366.25 15.07 5.52 5.52 Total: -1.00 -31.36 366.25 -7.01 -38.37 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.57 Total: 4.77 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.59 Total: -6.46 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.57 Total: -45.77 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.36 -7.01 -38.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597161011.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.211 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds