Wall clock time and date at job start Fri Apr 10 2020 22:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 N 1.46507 * 109.47174 * 184.95602 * 3 2 1 5 5 N 1.28439 * 125.18891 * 274.48858 * 4 3 2 6 6 C 1.30870 * 110.92492 * 179.97438 * 5 4 3 7 7 C 1.39669 * 107.85853 * 359.77294 * 6 5 4 8 8 C 1.36591 * 125.18891 * 94.45936 * 4 3 2 9 9 C 1.47169 * 126.88718 * 359.97438 * 8 4 3 10 10 O 1.21631 * 119.99557 * 30.06654 * 9 8 4 11 11 N 1.34768 * 120.00322 * 210.07613 * 9 8 4 12 12 C 1.46497 * 120.00400 * 184.70578 * 11 9 8 13 13 C 1.50702 * 109.47217 * 274.77534 * 12 11 9 14 14 H 1.08005 * 119.99727 * 5.08538 * 13 12 11 15 15 C 1.37877 * 120.00291 * 185.08597 * 13 12 11 16 16 N 1.31503 * 119.99998 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99882 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47351 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47281 * 120.00070 * 17 15 13 20 20 H 1.48505 * 109.47076 * 239.99858 * 17 15 13 21 21 C 1.46503 * 120.00112 * 4.69885 * 11 9 8 22 22 C 1.53000 * 109.47243 * 157.47032 * 21 11 9 23 23 C 1.52997 * 109.47556 * 277.47692 * 21 11 9 24 24 C 1.53003 * 109.46854 * 37.47722 * 21 11 9 25 25 C 1.52996 * 109.47276 * 104.36834 * 24 21 11 26 26 H 1.08997 * 109.46854 * 64.97186 * 1 2 3 27 27 H 1.09005 * 109.46787 * 184.97152 * 1 2 3 28 28 H 1.08998 * 109.47104 * 304.97063 * 1 2 3 29 29 H 1.09005 * 109.47135 * 240.00014 * 2 1 3 30 30 H 1.09001 * 109.47430 * 120.00447 * 2 1 3 31 31 H 1.09002 * 109.46852 * 64.96208 * 3 2 1 32 32 H 1.08992 * 109.47249 * 304.96000 * 3 2 1 33 33 H 1.07998 * 126.06913 * 180.02562 * 6 5 4 34 34 H 1.08002 * 127.31896 * 180.26586 * 7 6 5 35 35 H 1.08996 * 109.47270 * 34.76907 * 12 11 9 36 36 H 1.08998 * 109.47888 * 154.77694 * 12 11 9 37 37 H 0.97006 * 120.00201 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47311 * 178.33432 * 22 21 11 39 39 H 1.08997 * 109.47735 * 298.34038 * 22 21 11 40 40 H 1.09000 * 109.46818 * 58.33784 * 22 21 11 41 41 H 1.09004 * 109.47091 * 276.88292 * 23 21 11 42 42 H 1.09000 * 109.46899 * 36.87363 * 23 21 11 43 43 H 1.08995 * 109.47558 * 156.87790 * 23 21 11 44 44 H 1.08998 * 109.46956 * 224.37208 * 24 21 11 45 45 H 1.08998 * 109.47048 * 344.36596 * 24 21 11 46 46 H 1.09002 * 109.47368 * 295.82706 * 25 24 21 47 47 H 1.09005 * 109.47298 * 55.82744 * 25 24 21 48 48 H 1.09002 * 109.47408 * 175.82054 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5002 1.4442 -0.1193 5 7 4.3230 1.3329 0.8606 6 6 5.5610 1.3684 0.4377 7 6 5.5352 1.5119 -0.9514 8 6 4.1941 1.5640 -1.2897 9 6 3.6291 1.7120 -2.6405 10 8 2.5577 2.2667 -2.7941 11 7 4.2988 1.2326 -3.7073 12 6 3.7883 1.4699 -5.0598 13 6 2.7751 0.4098 -5.4075 14 1 2.4746 -0.3142 -4.6646 15 6 2.2319 0.3643 -6.6739 16 7 2.5974 1.2462 -7.5783 17 14 0.9755 -0.9493 -7.1045 18 1 0.7354 -1.8120 -5.9199 19 1 -0.2977 -0.3022 -7.5111 20 1 1.4895 -1.7776 -8.2248 21 6 5.5374 0.4744 -3.5145 22 6 5.7914 -0.4075 -4.7387 23 6 6.7065 1.4446 -3.3335 24 6 5.4079 -0.4060 -2.2699 25 6 5.1847 -1.8590 -2.6940 26 1 -0.3633 0.4348 -0.9312 27 1 -0.3633 -1.0239 0.0891 28 1 -0.3633 0.5890 0.8421 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.7510 1.9300 0.9311 32 1 1.6059 1.9813 -0.8422 33 1 6.4455 1.2951 1.0530 34 1 6.3817 1.5712 -1.6194 35 1 3.3164 2.4514 -5.1031 36 1 4.6130 1.4315 -5.7715 37 1 2.2155 1.2139 -8.4694 38 1 6.7281 -0.9494 -4.6082 39 1 4.9729 -1.1185 -4.8505 40 1 5.8542 0.2172 -5.6297 41 1 7.0636 1.7697 -4.3107 42 1 6.3743 2.3110 -2.7615 43 1 7.5144 0.9445 -2.7993 44 1 6.3210 -0.3362 -1.6788 45 1 4.5615 -0.0679 -1.6721 46 1 4.2343 -1.9417 -3.2214 47 1 5.9943 -2.1738 -3.3525 48 1 5.1665 -2.4968 -1.8102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598834560.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:43 Heat of formation + Delta-G solvation = 94.936374 kcal Electronic energy + Delta-G solvation = -28165.429300 eV Core-core repulsion = 24645.833743 eV Total energy + Delta-G solvation = -3519.595557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.71711 -39.53766 -37.15466 -35.20056 -33.57473 -31.98594 -31.53734 -31.01725 -29.88943 -27.51739 -26.81390 -26.11949 -23.75817 -23.32878 -22.07062 -21.54919 -21.18561 -19.91368 -18.04270 -16.97449 -16.59069 -15.80191 -15.59010 -15.29024 -14.97385 -14.70925 -14.43081 -14.37569 -13.96587 -13.68332 -13.38075 -13.11996 -12.67684 -12.44176 -12.33729 -12.15533 -12.08066 -12.00056 -11.56495 -11.47162 -11.44614 -11.23592 -11.05847 -10.96172 -10.81684 -10.64855 -10.45819 -10.41506 -10.33756 -10.07974 -9.93740 -9.61899 -9.12533 -8.79918 -8.44969 -8.10691 -7.71218 -6.06969 -4.09650 1.74785 2.65536 2.91746 3.26946 3.35246 3.38587 3.69355 3.81883 4.42050 4.69317 4.80866 4.87605 5.01972 5.07724 5.18776 5.24663 5.28740 5.40202 5.43036 5.50117 5.62012 5.65421 5.68208 5.76388 5.79607 5.90035 5.95655 5.99640 6.04919 6.08517 6.11993 6.20562 6.23574 6.30222 6.36754 6.43869 6.62467 6.63972 6.78836 6.94354 7.03028 7.09106 7.38647 7.48838 7.89631 8.19612 8.29169 8.39671 8.82718 8.99094 9.54199 11.01258 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.006390 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.296754 B = 4380.803993 C = 5492.631894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.111 3.889 4 N -0.262 5.262 5 N -0.295 5.295 6 C -0.016 4.016 7 C -0.236 4.236 8 C -0.015 4.015 9 C 0.574 3.426 10 O -0.537 6.537 11 N -0.568 5.568 12 C 0.246 3.754 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.165 3.835 22 C -0.147 4.147 23 C -0.180 4.180 24 C -0.149 4.149 25 C -0.156 4.156 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.178 0.822 34 H 0.195 0.805 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.262 0.738 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.723 -2.823 12.839 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C -0.009 4.009 4 N -0.049 5.049 5 N -0.127 5.127 6 C -0.191 4.191 7 C -0.263 4.263 8 C -0.144 4.144 9 C 0.359 3.641 10 O -0.414 6.414 11 N -0.299 5.299 12 C 0.128 3.872 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.721 3.279 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.210 1.210 21 C 0.079 3.921 22 C -0.204 4.204 23 C -0.237 4.237 24 C -0.187 4.187 25 C -0.213 4.213 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.196 0.804 34 H 0.211 0.789 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.309 -2.571 13.510 14.742 hybrid contribution -0.151 -0.685 -1.000 1.221 sum 5.159 -3.256 12.511 13.919 Atomic orbital electron populations 1.21670 0.94085 1.02256 1.02544 1.21838 0.97091 0.95366 1.03100 1.22310 0.73296 0.99502 1.05787 1.45769 1.07243 1.49524 1.02357 1.73089 1.01350 1.21153 1.17085 1.23464 0.94331 1.07121 0.94211 1.23887 0.96990 1.08381 0.97010 1.21644 0.92462 1.10592 0.89663 1.16875 0.84473 0.80150 0.82600 1.90750 1.20807 1.44322 1.85567 1.48210 1.22889 1.51037 1.07807 1.19385 0.94830 0.97601 0.75395 1.21371 1.23330 1.13832 0.96661 0.92492 1.24883 0.96757 0.96115 0.96234 1.69925 1.43776 1.35317 1.04465 0.86520 0.81478 0.81647 0.78266 1.19862 1.20947 1.21002 1.20445 0.84220 0.91076 0.96344 1.22242 1.01431 1.00212 0.96530 1.22800 0.98026 1.00318 1.02546 1.23271 1.03180 0.94959 0.97253 1.22054 1.02439 0.96318 1.00510 0.91687 0.92072 0.92482 0.91115 0.91341 0.88797 0.86114 0.80448 0.78869 0.94611 0.93595 0.92813 0.92730 0.90186 0.91381 0.91743 0.90521 0.91263 0.90633 0.89236 0.92220 0.92262 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.14 -1.85 6.26 -26.73 -0.17 -2.01 16 3 C 0.11 1.65 6.17 -4.04 -0.02 1.63 16 4 N -0.26 -4.33 3.35 -65.54 -0.22 -4.55 16 5 N -0.29 -4.61 11.90 30.59 0.36 -4.25 16 6 C -0.02 -0.21 12.03 -17.43 -0.21 -0.42 16 7 C -0.24 -3.42 5.74 -38.99 -0.22 -3.65 16 8 C -0.01 -0.26 4.27 -82.06 -0.35 -0.61 16 9 C 0.57 12.14 6.88 -12.64 -0.09 12.05 16 10 O -0.54 -13.13 14.77 5.25 0.08 -13.05 16 11 N -0.57 -11.70 2.39 -161.53 -0.39 -12.08 16 12 C 0.25 6.11 4.42 -5.19 -0.02 6.09 16 13 C -0.51 -13.83 8.51 -34.44 -0.29 -14.12 16 14 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.90 -25.61 13.29 55.43 0.74 -24.88 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C 0.16 2.67 0.90 -131.82 -0.12 2.55 16 22 C -0.15 -2.42 6.09 37.16 0.23 -2.20 16 23 C -0.18 -2.37 7.33 37.16 0.27 -2.09 16 24 C -0.15 -2.22 3.87 -26.73 -0.10 -2.32 16 25 C -0.16 -2.26 8.60 37.16 0.32 -1.94 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.12 2.04 6.08 -51.93 -0.32 1.72 16 33 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.20 2.45 2.43 -60.70 -0.15 2.31 16 35 H 0.04 1.01 7.64 -51.93 -0.40 0.61 16 36 H 0.05 1.15 6.07 -51.93 -0.32 0.83 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.05 0.72 7.27 -51.93 -0.38 0.35 16 39 H 0.08 1.49 5.91 -51.93 -0.31 1.18 16 40 H 0.07 1.23 6.26 -51.93 -0.33 0.91 16 41 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 42 H 0.08 1.05 5.60 -51.93 -0.29 0.76 16 43 H 0.07 0.71 7.12 -51.93 -0.37 0.34 16 44 H 0.08 0.96 5.90 -51.93 -0.31 0.65 16 45 H 0.09 1.53 3.59 -69.12 -0.25 1.28 16 46 H 0.06 1.01 7.44 -51.93 -0.39 0.62 16 47 H 0.06 0.77 6.22 -51.93 -0.32 0.45 16 48 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -31.09 359.62 -6.99 -38.08 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.45 Total: 5.75 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -0.51 Total: -6.79 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.50 Total: -45.75 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.09 -6.99 -38.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598834560.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.013 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds