Wall clock time and date at job start Fri Apr 10 2020 22:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47017 * 2 1 4 4 N 1.46507 * 109.47174 * 184.95602 * 3 2 1 5 5 N 1.28439 * 125.18891 * 274.48858 * 4 3 2 6 6 C 1.30870 * 110.92492 * 179.97438 * 5 4 3 7 7 C 1.39669 * 107.85853 * 359.77294 * 6 5 4 8 8 C 1.36591 * 125.18891 * 94.45936 * 4 3 2 9 9 C 1.47169 * 126.88718 * 359.97438 * 8 4 3 10 10 O 1.21631 * 119.99557 * 30.06654 * 9 8 4 11 11 N 1.34768 * 120.00322 * 210.07613 * 9 8 4 12 12 C 1.46497 * 120.00400 * 184.70578 * 11 9 8 13 13 C 1.50702 * 109.47217 * 274.77534 * 12 11 9 14 14 H 1.08005 * 119.99727 * 5.08538 * 13 12 11 15 15 C 1.37877 * 120.00291 * 185.08597 * 13 12 11 16 16 N 1.31503 * 119.99998 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99882 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47351 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47281 * 120.00070 * 17 15 13 20 20 H 1.48505 * 109.47076 * 239.99858 * 17 15 13 21 21 C 1.46503 * 120.00112 * 4.69885 * 11 9 8 22 22 C 1.53000 * 109.47243 * 157.47032 * 21 11 9 23 23 C 1.52997 * 109.47556 * 277.47692 * 21 11 9 24 24 C 1.53003 * 109.46854 * 37.47722 * 21 11 9 25 25 C 1.52996 * 109.47276 * 104.36834 * 24 21 11 26 26 H 1.08997 * 109.46854 * 64.97186 * 1 2 3 27 27 H 1.09005 * 109.46787 * 184.97152 * 1 2 3 28 28 H 1.08998 * 109.47104 * 304.97063 * 1 2 3 29 29 H 1.09005 * 109.47135 * 240.00014 * 2 1 3 30 30 H 1.09001 * 109.47430 * 120.00447 * 2 1 3 31 31 H 1.09002 * 109.46852 * 64.96208 * 3 2 1 32 32 H 1.08992 * 109.47249 * 304.96000 * 3 2 1 33 33 H 1.07998 * 126.06913 * 180.02562 * 6 5 4 34 34 H 1.08002 * 127.31896 * 180.26586 * 7 6 5 35 35 H 1.08996 * 109.47270 * 34.76907 * 12 11 9 36 36 H 1.08998 * 109.47888 * 154.77694 * 12 11 9 37 37 H 0.97006 * 120.00201 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47311 * 178.33432 * 22 21 11 39 39 H 1.08997 * 109.47735 * 298.34038 * 22 21 11 40 40 H 1.09000 * 109.46818 * 58.33784 * 22 21 11 41 41 H 1.09004 * 109.47091 * 276.88292 * 23 21 11 42 42 H 1.09000 * 109.46899 * 36.87363 * 23 21 11 43 43 H 1.08995 * 109.47558 * 156.87790 * 23 21 11 44 44 H 1.08998 * 109.46956 * 224.37208 * 24 21 11 45 45 H 1.08998 * 109.47048 * 344.36596 * 24 21 11 46 46 H 1.09002 * 109.47368 * 295.82706 * 25 24 21 47 47 H 1.09005 * 109.47298 * 55.82744 * 25 24 21 48 48 H 1.09002 * 109.47408 * 175.82054 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5002 1.4442 -0.1193 5 7 4.3230 1.3329 0.8606 6 6 5.5610 1.3684 0.4377 7 6 5.5352 1.5119 -0.9514 8 6 4.1941 1.5640 -1.2897 9 6 3.6291 1.7120 -2.6405 10 8 2.5577 2.2667 -2.7941 11 7 4.2988 1.2326 -3.7073 12 6 3.7883 1.4699 -5.0598 13 6 2.7751 0.4098 -5.4075 14 1 2.4746 -0.3142 -4.6646 15 6 2.2319 0.3643 -6.6739 16 7 2.5974 1.2462 -7.5783 17 14 0.9755 -0.9493 -7.1045 18 1 0.7354 -1.8120 -5.9199 19 1 -0.2977 -0.3022 -7.5111 20 1 1.4895 -1.7776 -8.2248 21 6 5.5374 0.4744 -3.5145 22 6 5.7914 -0.4075 -4.7387 23 6 6.7065 1.4446 -3.3335 24 6 5.4079 -0.4060 -2.2699 25 6 5.1847 -1.8590 -2.6940 26 1 -0.3633 0.4348 -0.9312 27 1 -0.3633 -1.0239 0.0891 28 1 -0.3633 0.5890 0.8421 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.7510 1.9300 0.9311 32 1 1.6059 1.9813 -0.8422 33 1 6.4455 1.2951 1.0530 34 1 6.3817 1.5712 -1.6194 35 1 3.3164 2.4514 -5.1031 36 1 4.6130 1.4315 -5.7715 37 1 2.2155 1.2139 -8.4694 38 1 6.7281 -0.9494 -4.6082 39 1 4.9729 -1.1185 -4.8505 40 1 5.8542 0.2172 -5.6297 41 1 7.0636 1.7697 -4.3107 42 1 6.3743 2.3110 -2.7615 43 1 7.5144 0.9445 -2.7993 44 1 6.3210 -0.3362 -1.6788 45 1 4.5615 -0.0679 -1.6721 46 1 4.2343 -1.9417 -3.2214 47 1 5.9943 -2.1738 -3.3525 48 1 5.1665 -2.4968 -1.8102 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598834560.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:42 Heat of formation + Delta-G solvation = 76.113833 kcal Electronic energy + Delta-G solvation = -28166.245507 eV Core-core repulsion = 24645.833743 eV Total energy + Delta-G solvation = -3520.411764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.94454 -41.00182 -38.69304 -36.34470 -35.48772 -33.77441 -32.75041 -32.29045 -31.09863 -29.29977 -28.13000 -27.31681 -25.51519 -24.63579 -23.31473 -22.92327 -22.54037 -21.19298 -19.38717 -18.70278 -18.33584 -17.25356 -17.05091 -16.59907 -16.48297 -16.04036 -15.98367 -15.63061 -15.44700 -15.11460 -14.59305 -14.42615 -14.16960 -13.90408 -13.65726 -13.58908 -13.28129 -13.13707 -13.08892 -13.00871 -12.79456 -12.71654 -12.55441 -12.33219 -12.25070 -12.13515 -11.93212 -11.88012 -11.69380 -11.59912 -11.51799 -11.16794 -10.75939 -10.61009 -9.97842 -9.50090 -9.27182 -8.21040 -6.31702 0.41653 1.32865 1.34971 1.40857 1.47042 1.81050 2.18344 2.28272 2.40876 3.09019 3.44750 3.56109 3.76248 3.79820 3.98572 4.05389 4.14378 4.15189 4.32184 4.38109 4.47908 4.52635 4.58191 4.66879 4.70007 4.75336 4.78863 4.81743 4.90992 4.95225 5.02287 5.04104 5.05533 5.14804 5.16783 5.22120 5.24478 5.26846 5.41548 5.46343 5.59478 5.64766 5.67861 5.85990 5.87794 6.09116 6.66434 6.74915 7.17311 7.25111 7.40500 8.86216 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.006390 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.296754 B = 4380.803993 C = 5492.631894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.108 3.892 4 N -0.270 5.270 5 N -0.301 5.301 6 C -0.005 4.005 7 C -0.214 4.214 8 C -0.044 4.044 9 C 0.567 3.433 10 O -0.588 6.588 11 N -0.572 5.572 12 C 0.266 3.734 13 C -0.519 4.519 14 H 0.042 0.958 15 C 0.015 3.985 16 N -0.925 5.925 17 Si 0.954 3.046 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.154 3.846 22 C -0.142 4.142 23 C -0.177 4.177 24 C -0.146 4.146 25 C -0.152 4.152 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.223 0.777 34 H 0.217 0.783 35 H -0.010 1.010 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.070 0.930 46 H 0.021 0.979 47 H 0.077 0.923 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.156 -4.315 15.133 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.012 4.012 4 N -0.058 5.058 5 N -0.133 5.133 6 C -0.180 4.180 7 C -0.241 4.241 8 C -0.172 4.172 9 C 0.354 3.646 10 O -0.470 6.470 11 N -0.302 5.302 12 C 0.145 3.855 13 C -0.557 4.557 14 H 0.060 0.940 15 C -0.184 4.184 16 N -0.565 5.565 17 Si 0.779 3.221 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.194 1.194 21 C 0.071 3.929 22 C -0.199 4.199 23 C -0.234 4.234 24 C -0.183 4.183 25 C -0.209 4.209 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.240 0.760 34 H 0.232 0.768 35 H 0.008 0.992 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.088 0.912 46 H 0.041 0.959 47 H 0.096 0.904 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.777 -4.084 15.814 18.090 hybrid contribution -0.860 -0.204 -1.680 1.898 sum 6.917 -4.288 14.134 16.310 Atomic orbital electron populations 1.21662 0.92678 1.03358 1.02466 1.21755 0.98267 0.94367 1.02003 1.22329 0.73152 1.00062 1.05612 1.45868 1.07664 1.50111 1.02155 1.73104 1.02244 1.21175 1.16792 1.24196 0.94811 1.05018 0.93996 1.24197 0.95890 1.06099 0.97947 1.21234 0.93954 1.13827 0.88153 1.17422 0.83836 0.79096 0.84223 1.90707 1.23136 1.46523 1.86627 1.48193 1.24451 1.51412 1.06106 1.18820 0.94047 0.94631 0.78003 1.21479 1.23941 1.13820 0.96490 0.94016 1.25641 0.98490 0.98123 0.96172 1.70020 1.44898 1.36749 1.04867 0.85573 0.79035 0.79248 0.78228 1.19847 1.20790 1.19372 1.20877 0.83301 0.91731 0.97015 1.22195 1.02407 0.99534 0.95764 1.22784 0.97643 0.99668 1.03283 1.23263 1.04065 0.94461 0.96504 1.22007 1.01143 0.96607 1.01129 0.93769 0.90788 0.90096 0.94420 0.89905 0.86390 0.89091 0.76022 0.76765 0.99208 0.93902 0.92490 0.88558 0.92981 0.93785 0.91865 0.90958 0.86601 0.86909 0.91196 0.95928 0.90415 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.91 71.98 0.71 -2.64 16 2 C -0.13 -3.47 6.26 30.59 0.19 -3.28 16 3 C 0.11 3.30 6.17 86.38 0.53 3.83 16 4 N -0.27 -8.79 3.35 -361.25 -1.21 -10.00 16 5 N -0.30 -8.62 11.90 -57.14 -0.68 -9.30 16 6 C 0.00 -0.11 12.03 85.18 1.02 0.91 16 7 C -0.21 -5.55 5.74 22.65 0.13 -5.42 16 8 C -0.04 -1.52 4.27 40.79 0.17 -1.35 16 9 C 0.57 25.22 6.88 86.59 0.60 25.81 16 10 O -0.59 -31.20 14.77 -4.13 -0.06 -31.26 16 11 N -0.57 -24.55 2.39 -783.21 -1.87 -26.42 16 12 C 0.27 14.07 4.42 85.63 0.38 14.44 16 13 C -0.52 -29.55 8.51 25.60 0.22 -29.33 16 14 H 0.04 2.45 7.81 -2.91 -0.02 2.43 16 15 C 0.01 0.84 5.46 84.66 0.46 1.30 16 16 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 17 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 18 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C 0.15 4.86 0.90 3.60 0.00 4.86 16 22 C -0.14 -4.59 6.09 71.98 0.44 -4.15 16 23 C -0.18 -4.12 7.33 71.98 0.53 -3.59 16 24 C -0.15 -4.00 3.87 30.59 0.12 -3.88 16 25 C -0.15 -4.15 8.60 71.98 0.62 -3.53 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.09 3.33 6.08 -2.39 -0.01 3.31 16 33 H 0.22 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.22 4.49 2.43 -10.62 -0.03 4.46 16 35 H -0.01 -0.62 7.64 -2.39 -0.02 -0.64 16 36 H 0.04 2.28 6.07 -2.39 -0.01 2.26 16 37 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 38 H 0.10 2.26 7.27 -2.39 -0.02 2.24 16 39 H 0.05 1.97 5.91 -2.39 -0.01 1.95 16 40 H 0.04 1.62 6.26 -2.39 -0.01 1.60 16 41 H 0.06 1.52 7.94 -2.39 -0.02 1.50 16 42 H 0.07 1.79 5.60 -2.39 -0.01 1.78 16 43 H 0.12 1.66 7.12 -2.39 -0.02 1.64 16 44 H 0.11 2.26 5.90 -2.39 -0.01 2.24 16 45 H 0.07 2.31 3.59 -18.54 -0.07 2.25 16 46 H 0.02 0.76 7.44 -2.39 -0.02 0.74 16 47 H 0.08 1.80 6.22 -2.38 -0.01 1.79 16 48 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -73.65 359.62 5.51 -68.14 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.89 Total: 22.28 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 6.13 Total: -6.04 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -3.47 Total: -100.25 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.06 Total: -31.26 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -73.65 5.51 -68.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598834560.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.255 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds