Wall clock time and date at job start Fri Apr 10 2020 22:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47422 * 2 1 4 4 N 1.39936 * 125.75388 * 270.00086 * 3 2 1 5 5 C 1.30445 * 108.89294 * 179.97438 * 4 3 2 6 6 C 1.41283 * 108.02829 * 0.02562 * 5 4 3 7 7 C 1.47433 * 126.42090 * 179.97438 * 6 5 4 8 8 O 1.21601 * 120.00556 * 159.40835 * 7 6 5 9 9 N 1.34775 * 119.99728 * 339.41529 * 7 6 5 10 10 C 1.46511 * 119.99943 * 5.85480 * 9 7 6 11 11 C 1.50701 * 109.46906 * 89.12906 * 10 9 7 12 12 H 1.08002 * 119.99797 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99973 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99864 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00177 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46831 * 59.99869 * 15 13 11 17 17 H 1.48499 * 109.47173 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46893 * 300.00499 * 15 13 11 19 19 C 1.46502 * 120.00349 * 185.86335 * 9 7 6 20 20 C 1.52996 * 109.47282 * 93.49844 * 19 9 7 21 21 C 1.53000 * 109.47096 * 54.73189 * 20 19 9 22 22 C 1.53001 * 109.46853 * 174.72558 * 20 19 9 23 23 C 1.52995 * 109.47322 * 294.72731 * 20 19 9 24 24 C 1.34261 * 125.75270 * 89.99697 * 3 2 1 25 25 C 1.50705 * 126.29117 * 0.26801 * 24 3 2 26 26 H 1.09007 * 109.47022 * 59.99812 * 1 2 3 27 27 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47059 * 300.00134 * 1 2 3 29 29 H 1.09005 * 109.46948 * 240.00256 * 2 1 3 30 30 H 1.09003 * 109.47005 * 120.00713 * 2 1 3 31 31 H 1.08006 * 125.98710 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47091 * 209.13104 * 10 9 7 33 33 H 1.08998 * 109.47001 * 329.12871 * 10 9 7 34 34 H 0.97008 * 120.00280 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.46931 * 213.50307 * 19 9 7 36 36 H 1.08999 * 109.46182 * 333.50111 * 19 9 7 37 37 H 1.08994 * 109.47447 * 59.99132 * 21 20 19 38 38 H 1.08998 * 109.47452 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.46618 * 299.99587 * 21 20 19 40 40 H 1.09000 * 109.46912 * 60.00094 * 22 20 19 41 41 H 1.09000 * 109.47108 * 180.02562 * 22 20 19 42 42 H 1.08996 * 109.47405 * 300.00523 * 22 20 19 43 43 H 1.08998 * 109.47080 * 65.80784 * 23 20 19 44 44 H 1.08995 * 109.47034 * 185.80170 * 23 20 19 45 45 H 1.09000 * 109.47133 * 305.80315 * 23 20 19 46 46 H 1.08996 * 109.46659 * 269.71236 * 25 24 3 47 47 H 1.09000 * 109.47113 * 29.70832 * 25 24 3 48 48 H 1.08997 * 109.47200 * 149.71528 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2910 2.1521 -1.1356 5 6 2.7067 3.3292 -0.7573 6 6 2.7165 3.3563 0.6553 7 6 3.1179 4.4913 1.5062 8 8 2.7448 4.5464 2.6623 9 7 3.8984 5.4679 1.0028 10 6 4.2423 5.4699 -0.4214 11 6 3.1939 6.2322 -1.1902 12 1 2.3552 6.6709 -0.6700 13 6 3.3055 6.3695 -2.5575 14 7 4.3265 5.8349 -3.1909 15 14 2.0057 7.3137 -3.5105 16 1 1.9453 8.7117 -3.0133 17 1 2.3549 7.3169 -4.9539 18 1 0.6839 6.6638 -3.3218 19 6 4.4032 6.5275 1.8796 20 6 5.7905 6.1431 2.3977 21 6 6.7094 5.8341 1.2140 22 6 6.3729 7.3044 3.2058 23 6 5.6766 4.9064 3.2913 24 6 2.2799 2.1208 1.0896 25 6 2.1303 1.6809 2.5232 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8900 31 1 2.9931 4.1410 -1.4096 32 1 5.2128 5.9462 -0.5602 33 1 4.2858 4.4436 -0.7860 34 1 4.4053 5.9318 -4.1529 35 1 4.4699 7.4607 1.3205 36 1 3.7236 6.6563 2.7220 37 1 6.7905 6.7151 0.5774 38 1 7.6976 5.5598 1.5831 39 1 6.2944 5.0068 0.6383 40 1 5.7182 7.5245 4.0491 41 1 7.3614 7.0307 3.5746 42 1 6.4540 8.1854 2.5693 43 1 5.3596 4.0530 2.6919 44 1 6.6457 4.6936 3.7424 45 1 4.9432 5.0916 4.0762 46 1 1.1257 1.9184 2.8731 47 1 2.2943 0.6055 2.5923 48 1 2.8625 2.2006 3.1410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601039658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:57 Heat of formation + Delta-G solvation = 36.643404 kcal Electronic energy + Delta-G solvation = -27363.163980 eV Core-core repulsion = 23841.040651 eV Total energy + Delta-G solvation = -3522.123330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90653 -38.98255 -36.49971 -34.80084 -33.89594 -32.34558 -31.67483 -29.42235 -27.74921 -27.11348 -26.88694 -26.64399 -25.29250 -23.54470 -22.94337 -21.09386 -19.86379 -18.45429 -17.89972 -16.72496 -16.44337 -15.55852 -15.22097 -15.04452 -14.67151 -14.51773 -14.18065 -13.80640 -13.72339 -13.22835 -13.14558 -12.82605 -12.68184 -12.59290 -12.34138 -12.15593 -12.04471 -11.90685 -11.79743 -11.62964 -11.30169 -11.20406 -11.05856 -10.98208 -10.88412 -10.68801 -10.39777 -10.27857 -10.19831 -10.03083 -9.87383 -9.64026 -8.89998 -8.76854 -8.48285 -7.95138 -7.48162 -6.18666 -4.26992 2.12310 2.86263 3.08041 3.27455 3.32013 3.35754 4.09437 4.23661 4.40780 4.68615 4.95448 5.00447 5.12207 5.14331 5.27095 5.27388 5.36610 5.39714 5.50069 5.52978 5.76068 5.78850 5.93965 5.96729 5.99791 5.99948 6.04173 6.16241 6.17866 6.25407 6.28415 6.36097 6.40119 6.45594 6.56830 6.62216 6.65634 6.79590 6.84908 6.95773 7.28025 7.41384 7.46542 7.68079 7.79937 8.07809 8.32074 8.49860 8.84181 9.23662 9.41113 10.85058 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.007223 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.735747 B = 3875.569231 C = 6246.175571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.128 3.872 3 N -0.374 5.374 4 N -0.319 5.319 5 C 0.088 3.912 6 C -0.283 4.283 7 C 0.596 3.404 8 O -0.580 6.580 9 N -0.587 5.587 10 C 0.213 3.787 11 C -0.541 4.541 12 H 0.063 0.937 13 C 0.067 3.933 14 N -0.886 5.886 15 Si 0.894 3.106 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.131 3.869 20 C -0.085 4.085 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.129 4.129 24 C 0.130 3.870 25 C -0.084 4.084 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.243 0.757 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.268 0.732 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -7.641 8.938 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.007 3.993 3 N -0.154 5.154 4 N -0.137 5.137 5 C -0.098 4.098 6 C -0.297 4.297 7 C 0.386 3.614 8 O -0.463 6.463 9 N -0.316 5.316 10 C 0.093 3.907 11 C -0.580 4.580 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.523 5.523 15 Si 0.721 3.279 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.008 3.992 20 C -0.086 4.086 21 C -0.197 4.197 22 C -0.193 4.193 23 C -0.186 4.186 24 C -0.002 4.002 25 C -0.143 4.143 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.258 0.742 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.533 -8.534 8.292 11.911 hybrid contribution -0.515 1.057 -0.202 1.193 sum -1.048 -7.477 8.091 11.066 Atomic orbital electron populations 1.22175 0.94587 1.02569 1.03407 1.21563 0.95065 0.78769 1.03925 1.48554 1.51086 1.11857 1.03947 1.77290 1.24291 1.05509 1.06655 1.26219 0.92714 0.95538 0.95298 1.20095 1.19415 0.95903 0.94303 1.17149 0.77402 0.81399 0.85404 1.90613 1.57831 1.79160 1.18712 1.47827 1.48387 1.24243 1.11130 1.20151 0.97114 0.98953 0.74523 1.21540 1.09211 1.35067 0.92156 0.91897 1.24958 0.95804 0.95435 0.97552 1.69911 1.28977 1.43756 1.09660 0.86601 0.82020 0.80551 0.78725 1.20085 1.21077 1.19962 1.21324 0.93023 0.90591 0.94289 1.20957 0.96250 0.95661 0.95731 1.21998 0.97799 1.02479 0.97466 1.21786 1.00134 0.97828 0.99602 1.21762 1.00145 0.97481 0.99199 1.21300 0.96708 0.91607 0.90561 1.20450 1.04299 1.00325 0.89198 0.91499 0.90870 0.92073 0.88868 0.89449 0.74155 0.93579 0.93021 0.92216 0.90818 0.90796 0.92481 0.93958 0.91449 0.92909 0.93024 0.92675 0.92986 0.94008 0.92487 0.90175 0.92073 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 10.24 37.16 0.38 -1.39 16 2 C 0.13 1.52 6.93 -4.04 -0.03 1.50 16 3 N -0.37 -6.47 3.58 -56.60 -0.20 -6.67 16 4 N -0.32 -6.76 12.50 30.86 0.39 -6.37 16 5 C 0.09 2.00 9.54 -16.98 -0.16 1.83 16 6 C -0.28 -6.03 5.84 -105.07 -0.61 -6.64 16 7 C 0.60 12.99 6.15 -12.52 -0.08 12.91 16 8 O -0.58 -12.87 14.01 5.28 0.07 -12.79 16 9 N -0.59 -12.44 1.99 -176.33 -0.35 -12.79 16 10 C 0.21 4.95 3.39 -5.19 -0.02 4.93 16 11 C -0.54 -13.76 7.59 -34.44 -0.26 -14.02 16 12 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 13 C 0.07 1.71 5.01 -17.82 -0.09 1.62 16 14 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 15 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 19 C 0.13 2.45 4.63 -4.04 -0.02 2.43 16 20 C -0.08 -1.35 0.85 -154.51 -0.13 -1.48 16 21 C -0.14 -2.32 7.03 37.16 0.26 -2.05 16 22 C -0.14 -1.79 8.47 37.16 0.31 -1.48 16 23 C -0.13 -2.05 7.35 37.16 0.27 -1.78 16 24 C 0.13 2.34 7.00 -81.60 -0.57 1.77 16 25 C -0.08 -1.18 9.44 36.01 0.34 -0.84 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 0.80 7.01 -51.93 -0.36 0.43 16 31 H 0.24 6.03 3.46 -52.48 -0.18 5.85 16 32 H 0.05 1.10 5.64 -51.93 -0.29 0.81 16 33 H 0.05 1.28 4.39 -51.93 -0.23 1.05 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.07 1.38 8.10 -51.93 -0.42 0.96 16 36 H 0.07 1.40 7.25 -51.93 -0.38 1.03 16 37 H 0.06 0.96 7.76 -51.93 -0.40 0.56 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 1.26 5.91 -51.93 -0.31 0.95 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.93 6.91 -51.93 -0.36 0.57 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.93 8.01 -51.93 -0.42 0.52 16 46 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.06 0.65 7.05 -51.93 -0.37 0.28 16 48 H 0.09 1.43 7.09 -51.93 -0.37 1.06 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -29.03 371.80 -7.03 -36.06 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.85 Total: 6.97 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.40 Total: -2.70 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.57 Total: -48.66 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.03 -7.03 -36.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601039658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.708 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds