Wall clock time and date at job start Fri Apr 10 2020 22:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47422 * 2 1 4 4 N 1.39936 * 125.75388 * 270.00086 * 3 2 1 5 5 C 1.30445 * 108.89294 * 179.97438 * 4 3 2 6 6 C 1.41283 * 108.02829 * 0.02562 * 5 4 3 7 7 C 1.47433 * 126.42090 * 179.97438 * 6 5 4 8 8 O 1.21601 * 120.00556 * 159.40835 * 7 6 5 9 9 N 1.34775 * 119.99728 * 339.41529 * 7 6 5 10 10 C 1.46511 * 119.99943 * 5.85480 * 9 7 6 11 11 C 1.50701 * 109.46906 * 89.12906 * 10 9 7 12 12 H 1.08002 * 119.99797 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99973 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99864 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00177 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46831 * 59.99869 * 15 13 11 17 17 H 1.48499 * 109.47173 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46893 * 300.00499 * 15 13 11 19 19 C 1.46502 * 120.00349 * 185.86335 * 9 7 6 20 20 C 1.52996 * 109.47282 * 93.49844 * 19 9 7 21 21 C 1.53000 * 109.47096 * 54.73189 * 20 19 9 22 22 C 1.53001 * 109.46853 * 174.72558 * 20 19 9 23 23 C 1.52995 * 109.47322 * 294.72731 * 20 19 9 24 24 C 1.34261 * 125.75270 * 89.99697 * 3 2 1 25 25 C 1.50705 * 126.29117 * 0.26801 * 24 3 2 26 26 H 1.09007 * 109.47022 * 59.99812 * 1 2 3 27 27 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47059 * 300.00134 * 1 2 3 29 29 H 1.09005 * 109.46948 * 240.00256 * 2 1 3 30 30 H 1.09003 * 109.47005 * 120.00713 * 2 1 3 31 31 H 1.08006 * 125.98710 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47091 * 209.13104 * 10 9 7 33 33 H 1.08998 * 109.47001 * 329.12871 * 10 9 7 34 34 H 0.97008 * 120.00280 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.46931 * 213.50307 * 19 9 7 36 36 H 1.08999 * 109.46182 * 333.50111 * 19 9 7 37 37 H 1.08994 * 109.47447 * 59.99132 * 21 20 19 38 38 H 1.08998 * 109.47452 * 180.02562 * 21 20 19 39 39 H 1.09004 * 109.46618 * 299.99587 * 21 20 19 40 40 H 1.09000 * 109.46912 * 60.00094 * 22 20 19 41 41 H 1.09000 * 109.47108 * 180.02562 * 22 20 19 42 42 H 1.08996 * 109.47405 * 300.00523 * 22 20 19 43 43 H 1.08998 * 109.47080 * 65.80784 * 23 20 19 44 44 H 1.08995 * 109.47034 * 185.80170 * 23 20 19 45 45 H 1.09000 * 109.47133 * 305.80315 * 23 20 19 46 46 H 1.08996 * 109.46659 * 269.71236 * 25 24 3 47 47 H 1.09000 * 109.47113 * 29.70832 * 25 24 3 48 48 H 1.08997 * 109.47200 * 149.71528 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2910 2.1521 -1.1356 5 6 2.7067 3.3292 -0.7573 6 6 2.7165 3.3563 0.6553 7 6 3.1179 4.4913 1.5062 8 8 2.7448 4.5464 2.6623 9 7 3.8984 5.4679 1.0028 10 6 4.2423 5.4699 -0.4214 11 6 3.1939 6.2322 -1.1902 12 1 2.3552 6.6709 -0.6700 13 6 3.3055 6.3695 -2.5575 14 7 4.3265 5.8349 -3.1909 15 14 2.0057 7.3137 -3.5105 16 1 1.9453 8.7117 -3.0133 17 1 2.3549 7.3169 -4.9539 18 1 0.6839 6.6638 -3.3218 19 6 4.4032 6.5275 1.8796 20 6 5.7905 6.1431 2.3977 21 6 6.7094 5.8341 1.2140 22 6 6.3729 7.3044 3.2058 23 6 5.6766 4.9064 3.2913 24 6 2.2799 2.1208 1.0896 25 6 2.1303 1.6809 2.5232 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5140 0.8900 31 1 2.9931 4.1410 -1.4096 32 1 5.2128 5.9462 -0.5602 33 1 4.2858 4.4436 -0.7860 34 1 4.4053 5.9318 -4.1529 35 1 4.4699 7.4607 1.3205 36 1 3.7236 6.6563 2.7220 37 1 6.7905 6.7151 0.5774 38 1 7.6976 5.5598 1.5831 39 1 6.2944 5.0068 0.6383 40 1 5.7182 7.5245 4.0491 41 1 7.3614 7.0307 3.5746 42 1 6.4540 8.1854 2.5693 43 1 5.3596 4.0530 2.6919 44 1 6.6457 4.6936 3.7424 45 1 4.9432 5.0916 4.0762 46 1 1.1257 1.9184 2.8731 47 1 2.2943 0.6055 2.5923 48 1 2.8625 2.2006 3.1410 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601039658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:56 Heat of formation + Delta-G solvation = 20.932913 kcal Electronic energy + Delta-G solvation = -27363.845238 eV Core-core repulsion = 23841.040651 eV Total energy + Delta-G solvation = -3522.804588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.41637 -40.55398 -37.98514 -36.39553 -35.23102 -34.21143 -33.01405 -30.74809 -29.50929 -28.48455 -28.08398 -28.04863 -26.77786 -24.85303 -24.64076 -22.69522 -21.24062 -19.83080 -19.45674 -18.63255 -17.99481 -16.98722 -16.81974 -16.56187 -16.29025 -16.06115 -15.49152 -15.23027 -14.97261 -14.61032 -14.53435 -14.32822 -14.14514 -13.89168 -13.75396 -13.41802 -13.36083 -13.16332 -12.97296 -12.85216 -12.83028 -12.74886 -12.47720 -12.41482 -12.28502 -12.23212 -11.97948 -11.85564 -11.65724 -11.57910 -11.47654 -11.39453 -10.70623 -10.44548 -10.15470 -9.52802 -9.16769 -8.18067 -6.32602 0.67435 1.36776 1.41370 1.42378 1.49384 1.59356 2.36048 2.50071 2.67245 3.09936 3.64512 3.71843 3.93236 3.96785 4.08435 4.10421 4.13829 4.17600 4.36159 4.39056 4.63125 4.66716 4.68493 4.72460 4.81424 4.82315 4.86368 4.90005 4.96402 4.98154 5.02222 5.05235 5.10359 5.12243 5.16594 5.21423 5.27261 5.30009 5.39159 5.55074 5.56627 5.70313 5.73874 6.01394 6.11945 6.13155 6.64908 6.74458 6.91797 7.35149 7.57963 8.83962 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.009081 B = 0.007223 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.735747 B = 3875.569231 C = 6246.175571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.361 5.361 4 N -0.342 5.342 5 C 0.068 3.932 6 C -0.322 4.322 7 C 0.593 3.407 8 O -0.590 6.590 9 N -0.590 5.590 10 C 0.232 3.768 11 C -0.545 4.545 12 H 0.047 0.953 13 C 0.031 3.969 14 N -0.909 5.909 15 Si 0.945 3.055 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.279 1.279 19 C 0.128 3.872 20 C -0.081 4.081 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.119 4.119 24 C 0.145 3.855 25 C -0.080 4.080 26 H 0.040 0.960 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.215 0.785 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.269 0.731 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.026 0.974 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -9.096 10.649 14.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.141 5.141 4 N -0.162 5.162 5 C -0.117 4.117 6 C -0.337 4.337 7 C 0.384 3.616 8 O -0.474 6.474 9 N -0.318 5.318 10 C 0.111 3.889 11 C -0.583 4.583 12 H 0.065 0.935 13 C -0.171 4.171 14 N -0.547 5.547 15 Si 0.770 3.230 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.205 1.205 19 C 0.005 3.995 20 C -0.082 4.082 21 C -0.191 4.191 22 C -0.187 4.187 23 C -0.176 4.176 24 C 0.011 3.989 25 C -0.138 4.138 26 H 0.059 0.941 27 H 0.129 0.871 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.145 0.855 31 H 0.231 0.769 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.045 0.955 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.111 0.889 47 H 0.123 0.877 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.745 -9.991 9.999 14.154 hybrid contribution -0.501 1.369 -0.707 1.620 sum -1.246 -8.622 9.292 12.737 Atomic orbital electron populations 1.22149 0.93252 1.04610 1.02062 1.22175 0.96155 0.75958 1.06310 1.48965 1.49364 1.13155 1.02640 1.77150 1.24794 1.05472 1.08785 1.25755 0.94312 0.95802 0.95859 1.20263 1.22090 0.97545 0.93779 1.17290 0.77219 0.81625 0.85456 1.90579 1.58355 1.79515 1.18916 1.47808 1.48530 1.24883 1.10557 1.19768 0.95870 0.97632 0.75580 1.21615 1.09130 1.34976 0.92613 0.93488 1.25510 0.97259 0.96111 0.98186 1.69987 1.30227 1.44698 1.09809 0.85807 0.79690 0.79546 0.77918 1.19524 1.20341 1.20493 1.21484 0.94694 0.89772 0.93553 1.20931 0.94382 0.97026 0.95833 1.21908 0.98946 1.00959 0.97305 1.21736 1.01084 0.96497 0.99386 1.21662 1.01197 0.96288 0.98493 1.21861 0.94209 0.90365 0.92440 1.20577 1.04552 1.02859 0.85768 0.94082 0.87104 0.92153 0.88140 0.85458 0.76939 0.94596 0.94372 0.92155 0.91520 0.91221 0.93323 0.91620 0.94334 0.92077 0.91051 0.92388 0.95497 0.91557 0.93020 0.88913 0.87725 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 10.24 71.98 0.74 -2.20 16 2 C 0.11 2.33 6.93 86.38 0.60 2.93 16 3 N -0.36 -12.06 3.58 -332.98 -1.19 -13.25 16 4 N -0.34 -14.81 12.50 -56.28 -0.70 -15.52 16 5 C 0.07 3.22 9.54 85.65 0.82 4.04 16 6 C -0.32 -14.11 5.84 -20.15 -0.12 -14.23 16 7 C 0.59 26.62 6.15 86.67 0.53 27.15 16 8 O -0.59 -26.45 14.01 -4.03 -0.06 -26.51 16 9 N -0.59 -26.03 1.99 -830.03 -1.65 -27.68 16 10 C 0.23 11.42 3.39 85.63 0.29 11.71 16 11 C -0.54 -28.96 7.59 25.60 0.19 -28.77 16 12 H 0.05 2.60 7.81 -2.91 -0.02 2.57 16 13 C 0.03 1.65 5.01 84.65 0.42 2.07 16 14 N -0.91 -49.97 13.29 21.45 0.28 -49.69 16 15 Si 0.94 43.04 29.54 68.60 2.03 45.07 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 C 0.13 4.88 4.63 86.38 0.40 5.28 16 20 C -0.08 -2.53 0.85 -52.18 -0.04 -2.58 16 21 C -0.13 -4.43 7.03 71.98 0.51 -3.93 16 22 C -0.13 -3.17 8.47 71.98 0.61 -2.56 16 23 C -0.12 -3.69 7.35 71.98 0.53 -3.16 16 24 C 0.15 5.09 7.00 42.14 0.29 5.38 16 25 C -0.08 -2.00 9.44 71.24 0.67 -1.32 16 26 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.13 1.67 7.01 -2.39 -0.02 1.65 16 31 H 0.21 11.35 3.46 -2.91 -0.01 11.34 16 32 H 0.04 1.82 5.64 -2.39 -0.01 1.81 16 33 H 0.04 2.03 4.39 -2.39 -0.01 2.02 16 34 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 35 H 0.07 2.58 8.10 -2.39 -0.02 2.56 16 36 H 0.07 2.69 7.25 -2.39 -0.02 2.67 16 37 H 0.05 1.66 7.76 -2.39 -0.02 1.64 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.48 5.91 -2.38 -0.01 1.47 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.03 0.95 6.91 -2.39 -0.02 0.93 16 44 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.64 8.01 -2.39 -0.02 1.62 16 46 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.10 1.71 7.05 -2.39 -0.02 1.69 16 48 H 0.08 2.32 7.09 -2.39 -0.02 2.30 16 Total: -1.00 -66.24 371.80 6.10 -60.14 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.94 Total: 27.63 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 6.44 Total: -0.19 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.26 Total: -106.14 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.06 Total: -26.51 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -66.24 6.10 -60.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601039658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.076 kcal (2) G-P(sol) polarization free energy of solvation -66.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds