Wall clock time and date at job start Fri Apr 10 2020 22:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47237 * 2 1 4 4 C 1.52998 * 109.46930 * 240.00334 * 2 1 3 5 5 C 1.50706 * 109.47348 * 65.00065 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 C 1.52994 * 109.47101 * 120.00497 * 2 1 3 14 14 N 1.46900 * 109.47023 * 295.00012 * 13 2 1 15 15 C 1.46900 * 110.99761 * 180.02562 * 14 13 2 16 16 H 1.08999 * 109.68712 * 34.99859 * 15 14 13 17 17 C 1.53367 * 109.68321 * 155.51657 * 15 14 13 18 18 C 1.53165 * 109.49106 * 169.63255 * 17 15 14 19 19 C 1.53369 * 109.52370 * 289.75447 * 18 17 15 20 20 C 1.50829 * 108.37922 * 49.94804 * 19 18 17 21 21 C 1.35746 * 124.12267 * 343.45961 * 20 19 18 22 22 C 1.39293 * 107.98832 * 179.79050 * 21 20 19 23 23 N 1.31070 * 108.08282 * 0.05946 * 22 21 20 24 24 N 1.34329 * 128.02844 * 163.33183 * 20 19 18 25 25 C 1.46492 * 126.09218 * 0.23296 * 24 20 19 26 26 C 1.53006 * 109.46901 * 90.00600 * 25 24 20 27 27 O 1.42897 * 109.46882 * 179.97438 * 26 25 24 28 28 H 1.09005 * 109.47237 * 299.99632 * 1 2 3 29 29 H 1.09001 * 109.47316 * 59.99787 * 1 2 3 30 30 H 1.08999 * 109.47461 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47671 * 305.00274 * 4 2 1 32 32 H 1.09006 * 109.47297 * 184.99993 * 4 2 1 33 33 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 34 34 H 1.09004 * 109.47106 * 54.99824 * 13 2 1 35 35 H 1.09002 * 109.47509 * 174.99953 * 13 2 1 36 36 H 1.00892 * 111.00359 * 56.04933 * 14 13 2 37 37 H 1.08997 * 109.46311 * 289.66978 * 17 15 14 38 38 H 1.09001 * 109.45987 * 49.64089 * 17 15 14 39 39 H 1.08997 * 109.45184 * 169.74179 * 18 17 15 40 40 H 1.08999 * 109.45164 * 49.76318 * 18 17 15 41 41 H 1.09001 * 109.67920 * 290.22459 * 19 18 17 42 42 H 1.08999 * 109.68193 * 169.67139 * 19 18 17 43 43 H 1.08005 * 125.96096 * 180.02562 * 22 21 20 44 44 H 1.09007 * 109.47208 * 210.00191 * 25 24 20 45 45 H 1.08996 * 109.47691 * 330.00688 * 25 24 20 46 46 H 1.08990 * 109.46763 * 299.99580 * 26 25 24 47 47 H 1.09002 * 109.47021 * 60.00006 * 26 25 24 48 48 H 0.96701 * 114.00201 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4766 6 1 1.0799 0.9744 -2.3757 7 6 1.9931 -0.4015 -3.7283 8 7 2.6763 -1.5185 -3.8513 9 14 1.4983 0.5630 -5.2496 10 1 1.9944 -0.1362 -6.4621 11 1 0.0182 0.6685 -5.3092 12 1 2.0895 1.9239 -5.1869 13 6 2.0399 -0.7213 1.2491 14 7 1.6513 0.0373 2.4456 15 6 2.1257 -0.6268 3.6670 16 1 3.0896 -1.0991 3.4775 17 6 2.2685 0.4042 4.7934 18 6 2.5100 -0.3197 6.1213 19 6 1.2277 -1.0429 6.5515 20 6 0.7240 -1.8532 5.3834 21 6 1.1254 -1.6696 4.0997 22 6 0.4563 -2.5959 3.3031 23 7 -0.3218 -3.3118 4.0777 24 7 -0.1679 -2.8576 5.3962 25 6 -0.8574 -3.3844 6.5765 26 6 -2.1668 -2.6208 6.7854 27 8 -2.8396 -3.1351 7.9364 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6053 -1.7197 -1.2954 32 1 3.1263 -0.7994 -1.2057 33 1 2.9329 -2.0195 -3.0613 34 1 1.6053 -1.7199 1.2950 35 1 3.1263 -0.7996 1.2055 36 1 0.6528 0.1791 2.4753 37 1 3.1109 1.0619 4.5791 38 1 1.3551 0.9950 4.8628 39 1 2.7912 0.4059 6.8845 40 1 3.3128 -1.0466 5.9977 41 1 0.4741 -0.3114 6.8432 42 1 1.4430 -1.7037 7.3912 43 1 0.5600 -2.7048 2.2336 44 1 -1.0735 -4.4426 6.4290 45 1 -0.2217 -3.2622 7.4534 46 1 -1.9507 -1.5628 6.9330 47 1 -2.8025 -2.7430 5.9085 48 1 -3.6794 -2.6964 8.1299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602523777.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:04 Heat of formation + Delta-G solvation = 1.009469 kcal Electronic energy + Delta-G solvation = -25701.366656 eV Core-core repulsion = 22177.698123 eV Total energy + Delta-G solvation = -3523.668533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.78836 -37.92481 -37.36404 -36.11199 -34.35487 -33.32075 -31.86154 -29.87503 -28.72963 -28.22804 -26.44949 -25.10870 -23.83434 -23.11334 -22.03852 -21.90791 -20.71474 -19.23685 -18.88486 -18.09214 -16.86479 -16.66571 -16.00777 -15.84117 -15.15163 -14.93938 -14.51021 -14.32832 -13.99626 -13.86316 -13.67971 -13.62883 -13.35580 -12.98447 -12.97029 -12.54111 -12.22681 -12.18437 -11.83283 -11.63158 -11.49915 -11.20208 -11.06740 -10.98342 -10.80579 -10.72000 -10.62906 -10.55105 -10.11749 -10.01349 -9.79944 -9.45984 -9.38596 -8.63343 -8.42236 -8.25158 -7.98573 -6.27710 -3.95546 1.63991 2.12312 2.67860 3.48161 3.50247 3.68693 3.76965 4.14585 4.27452 4.35489 4.52243 4.59959 4.61502 4.69108 4.76655 4.86916 4.96527 5.08788 5.16430 5.25167 5.27842 5.41274 5.46458 5.48775 5.53091 5.63670 5.76071 5.81875 5.84430 5.99266 6.08538 6.13772 6.19005 6.27472 6.43499 6.52391 6.55462 6.83091 6.89254 6.97690 7.07419 7.09320 7.37038 7.48429 7.57074 7.64056 7.72412 8.32102 8.55341 8.97650 9.75759 11.12800 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.021071 B = 0.002774 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.537102 B =10089.645536 C =10792.081016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 H 0.066 0.934 4 C 0.015 3.985 5 C -0.593 4.593 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.061 3.939 14 N -0.677 5.677 15 C 0.164 3.836 16 H 0.081 0.919 17 C -0.106 4.106 18 C -0.112 4.112 19 C -0.055 4.055 20 C 0.090 3.910 21 C -0.261 4.261 22 C 0.061 3.939 23 N -0.297 5.297 24 N -0.368 5.368 25 C 0.136 3.864 26 C 0.063 3.937 27 O -0.570 6.570 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.005 0.995 32 H 0.006 0.994 33 H 0.268 0.732 34 H 0.026 0.974 35 H 0.066 0.934 36 H 0.340 0.660 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.185 0.815 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 0.594 26.703 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.096 4.096 3 H 0.085 0.915 4 C -0.023 4.023 5 C -0.631 4.631 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.307 5.307 15 C 0.052 3.948 16 H 0.099 0.901 17 C -0.145 4.145 18 C -0.151 4.151 19 C -0.094 4.094 20 C -0.039 4.039 21 C -0.274 4.274 22 C -0.124 4.124 23 N -0.117 5.117 24 N -0.151 5.151 25 C 0.013 3.987 26 C -0.017 4.017 27 O -0.376 6.376 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.160 0.840 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.202 0.798 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.742 -0.377 25.180 25.829 hybrid contribution -0.785 0.087 1.581 1.767 sum -6.527 -0.289 26.761 27.547 Atomic orbital electron populations 1.21722 0.96539 1.00387 1.00341 1.21077 0.94906 1.00012 0.93569 0.91543 1.19237 0.95334 0.95397 0.92295 1.22035 1.38558 1.10225 0.92295 0.93258 1.25805 0.94783 0.97173 1.01353 1.70779 1.36159 1.14883 1.33495 0.83579 0.75995 0.75187 0.75723 1.20895 1.21559 1.21503 1.22262 1.00152 0.94654 0.89668 1.60728 1.19949 1.49122 1.00917 1.20015 0.95086 0.89564 0.90090 0.90143 1.21581 1.02700 0.97598 0.92575 1.21570 0.96136 0.99522 0.97871 1.20374 0.98342 0.97325 0.93386 1.20974 0.93705 0.91919 0.97288 1.20898 1.08786 1.05665 0.92080 1.23862 0.94623 0.93678 1.00245 1.77610 1.24368 1.23228 0.86499 1.48156 1.33239 1.27161 1.06556 1.21287 0.92862 0.99851 0.84678 1.22430 0.93680 0.96830 0.88712 1.86361 1.39732 1.64346 1.47145 0.94871 0.91848 0.94160 0.97703 0.97614 0.92167 0.95641 0.91554 0.84047 0.90724 0.91661 0.90780 0.91327 0.89961 0.90495 0.79829 0.87999 0.88381 0.93029 0.92474 0.76350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.77 37.16 0.33 -2.19 16 2 C -0.08 -1.57 2.54 -90.63 -0.23 -1.80 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 4 C 0.01 0.38 3.76 -27.88 -0.10 0.27 16 5 C -0.59 -16.88 8.41 -34.44 -0.29 -17.17 16 6 H 0.05 1.38 7.06 -52.48 -0.37 1.01 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.51 13.65 55.43 0.76 -27.76 16 9 Si 1.07 25.73 29.90 -169.99 -5.08 20.64 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.04 4.86 -3.83 -0.02 1.02 16 14 N -0.68 -9.78 6.20 -107.68 -0.67 -10.45 16 15 C 0.16 2.03 2.83 -68.61 -0.19 1.83 16 16 H 0.08 1.05 7.81 -51.93 -0.41 0.64 16 17 C -0.11 -1.04 5.52 -26.46 -0.15 -1.19 16 18 C -0.11 -0.85 5.90 -26.45 -0.16 -1.01 16 19 C -0.06 -0.42 5.90 -27.63 -0.16 -0.58 16 20 C 0.09 0.99 6.73 -82.33 -0.55 0.44 16 21 C -0.26 -3.35 5.33 -105.05 -0.56 -3.91 16 22 C 0.06 0.89 11.26 -17.48 -0.20 0.69 16 23 N -0.30 -4.35 12.59 30.54 0.38 -3.96 16 24 N -0.37 -4.30 3.60 -57.13 -0.21 -4.51 16 25 C 0.14 1.17 6.66 -4.04 -0.03 1.15 16 26 C 0.06 0.47 7.37 37.16 0.27 0.75 16 27 O -0.57 -3.93 13.66 -35.23 -0.48 -4.41 16 28 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 29 H 0.06 1.32 6.95 -51.93 -0.36 0.96 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 32 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 33 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 34 H 0.03 0.43 5.34 -51.93 -0.28 0.15 16 35 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 36 H 0.34 4.94 6.72 -39.30 -0.26 4.68 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.47 7.76 -51.93 -0.40 0.07 16 43 H 0.19 2.70 5.89 -52.48 -0.31 2.39 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.10 0.67 7.57 -51.93 -0.39 0.27 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.39 0.98 9.12 45.56 0.42 1.40 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -33.53 375.80 -9.05 -42.58 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.28 Total: 3.65 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -2.14 Total: -21.45 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.27 Total: -46.68 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -0.48 Total: -4.41 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.53 -9.05 -42.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602523777.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.593 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds