Wall clock time and date at job start Fri Apr 10 2020 22:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.46807 * 65.00319 * 4 2 1 6 6 H 1.07998 * 120.00496 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46764 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47029 * 119.99717 * 9 7 5 12 12 H 1.48494 * 109.47080 * 239.99687 * 9 7 5 13 13 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 14 14 N 1.46901 * 109.46769 * 294.99558 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 H 1.09001 * 109.54228 * 325.17997 * 15 14 13 17 17 C 1.53172 * 109.54404 * 85.44691 * 15 14 13 18 18 C 1.53098 * 109.16361 * 62.88227 * 17 15 14 19 19 O 1.42907 * 109.41124 * 57.61394 * 18 17 15 20 20 C 1.42902 * 114.09319 * 298.83719 * 19 18 17 21 21 H 1.08994 * 109.48442 * 301.17739 * 20 19 18 22 22 C 1.50704 * 109.47491 * 181.14132 * 20 19 18 23 23 C 1.35308 * 126.12981 * 324.74728 * 22 20 19 24 24 C 1.39871 * 107.92154 * 179.90441 * 23 22 20 25 25 N 1.30841 * 108.20358 * 0.36791 * 24 23 22 26 26 N 1.34947 * 126.12354 * 145.06376 * 22 20 19 27 27 C 1.46507 * 126.03563 * 359.93740 * 26 22 20 28 28 C 1.53096 * 109.41547 * 61.16519 * 20 19 18 29 29 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 30 30 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 31 31 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 33 33 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 34 34 H 0.97010 * 119.99808 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47398 * 54.99853 * 13 2 1 36 36 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 37 37 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 38 38 H 1.09002 * 109.52753 * 182.79255 * 17 15 14 39 39 H 1.09004 * 109.52186 * 302.98483 * 17 15 14 40 40 H 1.08999 * 109.48164 * 297.62612 * 18 17 15 41 41 H 1.09004 * 109.48646 * 177.59973 * 18 17 15 42 42 H 1.08003 * 126.03956 * 0.03902 * 23 22 20 43 43 H 1.08004 * 125.90375 * 180.14028 * 24 23 22 44 44 H 1.08993 * 109.47460 * 90.00873 * 27 26 22 45 45 H 1.09009 * 109.46829 * 210.00093 * 27 26 22 46 46 H 1.08996 * 109.47422 * 330.00083 * 27 26 22 47 47 H 1.08998 * 109.52119 * 182.48464 * 28 20 19 48 48 H 1.08993 * 109.52503 * 62.29288 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9924 -0.4024 -3.7283 8 7 2.6747 -1.5200 -3.8511 9 14 1.4977 0.5619 -5.2498 10 1 0.7404 1.7730 -4.8436 11 1 2.7156 0.9665 -5.9971 12 1 0.6435 -0.2875 -6.1180 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1257 -0.6264 3.6672 16 1 2.0858 -1.7075 3.5336 17 6 3.5671 -0.1970 3.9571 18 6 3.5991 1.3110 4.2194 19 8 2.7283 1.6221 5.3090 20 6 1.3591 1.2861 5.0757 21 1 0.9995 1.8171 4.1944 22 6 0.5336 1.6818 6.2729 23 6 0.9271 1.6277 7.5664 24 6 -0.1320 2.0841 8.3579 25 7 -1.1285 2.3934 7.5684 26 7 -0.7325 2.1480 6.2473 27 6 -1.5486 2.3606 5.0493 28 6 1.2371 -0.2229 4.8478 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1263 -0.7996 -1.2056 33 1 1.6053 -1.7199 -1.2951 34 1 2.9220 -1.8430 -4.7318 35 1 1.6053 -1.7198 1.2952 36 1 3.1263 -0.7995 1.2057 37 1 1.9882 0.9874 2.3966 38 1 3.9357 -0.7274 4.8352 39 1 4.1966 -0.4306 3.0984 40 1 3.2689 1.8424 3.3269 41 1 4.6158 1.6153 4.4683 42 1 1.8897 1.2934 7.9243 43 1 -0.1292 2.1637 9.4350 44 1 -2.1066 1.4519 4.8238 45 1 -2.2452 3.1804 5.2250 46 1 -0.9014 2.6078 4.2078 47 1 0.2001 -0.4751 4.6261 48 1 1.5585 -0.7538 5.7438 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602681456.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:35 Heat of formation + Delta-G solvation = -1.797630 kcal Electronic energy + Delta-G solvation = -25896.019023 eV Core-core repulsion = 22372.228765 eV Total energy + Delta-G solvation = -3523.790258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.31167 -40.69831 -38.06387 -36.00314 -34.40460 -34.23631 -33.21480 -31.53760 -30.04973 -28.71186 -27.59698 -26.70857 -25.70508 -24.72631 -24.28694 -22.10000 -21.19116 -20.65973 -20.20908 -18.51267 -18.16146 -17.10184 -16.81424 -16.65918 -16.47351 -16.34862 -15.87828 -15.75222 -15.39434 -15.02833 -14.54382 -14.50248 -14.35484 -14.27711 -13.60174 -13.45290 -13.37579 -13.29561 -13.20497 -13.05855 -12.94128 -12.78745 -12.57770 -12.33343 -12.21112 -12.12173 -11.87754 -11.66080 -11.52663 -11.35024 -11.07005 -10.84917 -10.65286 -10.53456 -10.16197 -9.46878 -9.32346 -8.17374 -6.25863 0.83197 1.39512 1.40722 1.52202 1.52877 1.89258 2.41928 2.74818 3.16531 3.18619 3.51982 3.70203 3.80327 3.95113 3.98349 3.98801 4.12540 4.19373 4.35795 4.36429 4.41054 4.43407 4.54415 4.66284 4.67763 4.74800 4.78786 4.80541 4.84526 4.90978 4.97671 5.03550 5.04579 5.11117 5.14884 5.26085 5.32502 5.48963 5.53937 5.57839 5.75060 5.83513 5.90670 5.99169 6.05845 6.18413 6.32195 6.45445 6.74036 6.90988 7.42573 8.94738 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.002777 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.942904 B =10078.597615 C =10801.615016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.073 4.073 3 H 0.053 0.947 4 C 0.032 3.968 5 C -0.525 4.525 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.958 3.042 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.078 3.922 14 N -0.677 5.677 15 C 0.085 3.915 16 H 0.083 0.917 17 C -0.183 4.183 18 C 0.062 3.938 19 O -0.380 6.380 20 C 0.164 3.836 21 H 0.076 0.924 22 C 0.080 3.920 23 C -0.262 4.262 24 C 0.040 3.960 25 N -0.328 5.328 26 N -0.373 5.373 27 C 0.088 3.912 28 C -0.116 4.116 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.033 0.967 32 H -0.014 1.014 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.022 0.978 37 H 0.339 0.661 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.114 0.886 42 H 0.156 0.844 43 H 0.211 0.789 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 5.787 22.401 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.006 4.006 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.783 3.217 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.207 1.207 13 C -0.051 4.051 14 N -0.309 5.309 15 C -0.025 4.025 16 H 0.102 0.898 17 C -0.222 4.222 18 C -0.015 4.015 19 O -0.299 6.299 20 C 0.105 3.895 21 H 0.094 0.906 22 C -0.048 4.048 23 C -0.291 4.291 24 C -0.145 4.145 25 N -0.150 5.150 26 N -0.157 5.157 27 C -0.052 4.052 28 C -0.155 4.155 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.005 0.995 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.040 0.960 37 H 0.159 0.841 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.174 0.826 43 H 0.228 0.772 44 H 0.104 0.896 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.096 0.904 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.079 5.957 22.282 23.422 hybrid contribution 1.715 -0.199 -1.448 2.254 sum -2.363 5.758 20.834 21.744 Atomic orbital electron populations 1.21489 0.94705 1.00321 1.00520 1.21002 0.96684 0.98361 0.93171 0.92831 1.19021 0.94128 0.94655 0.92800 1.21676 1.34115 1.08494 0.92067 0.92097 1.25929 0.95374 0.96077 1.02606 1.70105 1.40495 1.22918 1.24148 0.85499 0.78038 0.78954 0.79185 1.18517 1.20641 1.20723 1.21864 0.96860 0.97211 0.89128 1.60658 1.63605 1.05721 1.00901 1.21627 0.92057 0.99357 0.89479 0.89837 1.22796 0.98283 0.97705 1.03418 1.22703 0.95003 0.94415 0.89354 1.87920 1.16658 1.83822 1.41467 1.20172 0.81753 0.95531 0.92058 0.90589 1.20795 0.86813 1.00083 0.97112 1.21455 1.02455 1.13967 0.91241 1.24368 0.90687 0.97997 1.01422 1.77330 1.24788 1.25447 0.87405 1.48694 1.10586 1.49939 1.06476 1.22156 0.96040 1.04292 0.82699 1.22040 1.01256 0.94257 0.97938 0.91144 0.94623 0.94767 0.99518 0.99279 0.93017 0.91956 0.95977 0.84111 0.89502 0.90814 0.92919 0.86806 0.82610 0.77247 0.89551 0.88464 0.88175 0.90399 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.98 8.89 71.98 0.64 -3.34 16 2 C -0.07 -2.76 2.48 -10.79 -0.03 -2.79 16 3 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 4 C 0.03 1.59 4.45 29.85 0.13 1.73 16 5 C -0.53 -28.92 8.41 25.60 0.22 -28.70 16 6 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 8 N -0.94 -56.40 13.29 21.45 0.28 -56.12 16 9 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 C 0.08 2.38 4.88 86.30 0.42 2.80 16 14 N -0.68 -15.62 5.32 -490.94 -2.61 -18.23 16 15 C 0.08 1.65 2.89 45.03 0.13 1.78 16 16 H 0.08 1.71 7.80 -2.39 -0.02 1.69 16 17 C -0.18 -3.17 5.72 30.68 0.18 -2.99 16 18 C 0.06 1.05 6.58 72.01 0.47 1.53 16 19 O -0.38 -7.70 10.10 -148.98 -1.50 -9.20 16 20 C 0.16 3.16 2.66 29.88 0.08 3.24 16 21 H 0.08 1.45 6.18 -2.39 -0.01 1.43 16 22 C 0.08 1.72 6.00 41.40 0.25 1.97 16 23 C -0.26 -5.46 10.37 21.99 0.23 -5.23 16 24 C 0.04 0.80 12.03 85.24 1.02 1.82 16 25 N -0.33 -7.90 12.58 -57.02 -0.72 -8.62 16 26 N -0.37 -8.17 4.01 -356.02 -1.43 -9.60 16 27 C 0.09 1.37 11.27 127.77 1.44 2.81 16 28 C -0.12 -2.12 5.10 30.69 0.16 -1.96 16 29 H 0.07 2.05 7.75 -2.39 -0.02 2.03 16 30 H 0.03 1.37 6.95 -2.38 -0.02 1.35 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 35 H 0.06 1.98 8.06 -2.39 -0.02 1.96 16 36 H 0.02 0.69 7.43 -2.39 -0.02 0.67 16 37 H 0.34 7.46 5.82 -89.69 -0.52 6.94 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.38 7.43 -2.39 -0.02 1.36 16 40 H 0.05 0.91 6.43 -2.39 -0.02 0.89 16 41 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.21 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.10 1.31 6.98 -2.39 -0.02 1.29 16 47 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -67.28 377.05 2.26 -65.02 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.41 Total: 17.97 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 5.80 Total: -27.03 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -4.47 Total: -92.56 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -1.50 Total: -9.20 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -67.28 2.26 -65.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602681456.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.220 kcal (2) G-P(sol) polarization free energy of solvation -67.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds