Wall clock time and date at job start Fri Apr 10 2020 22:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36883 * 126.39588 * 2 1 4 4 C 1.34669 * 106.81684 * 179.97438 * 3 2 1 5 5 N 1.34133 * 108.02200 * 359.78635 * 4 3 2 6 6 C 1.30499 * 109.25067 * 0.36444 * 5 4 3 7 7 C 1.50706 * 125.64523 * 179.89114 * 6 5 4 8 8 H 1.09003 * 109.46527 * 164.69595 * 7 6 5 9 9 N 1.46900 * 109.46767 * 44.69936 * 7 6 5 10 10 C 1.46903 * 110.99777 * 129.35181 * 9 7 6 11 11 C 1.53001 * 109.47170 * 178.99467 * 10 9 7 12 12 C 1.50703 * 115.54604 * 39.85556 * 11 10 9 13 13 H 1.07997 * 119.99752 * 264.98609 * 12 11 10 14 14 C 1.37875 * 119.99902 * 84.98842 * 12 11 10 15 15 N 1.31510 * 120.00238 * 4.80965 * 14 12 11 16 16 Si 1.86805 * 119.99624 * 184.80519 * 14 12 11 17 17 H 1.48497 * 109.47068 * 90.00455 * 16 14 12 18 18 H 1.48504 * 109.47016 * 210.00209 * 16 14 12 19 19 H 1.48501 * 109.47128 * 329.99999 * 16 14 12 20 20 C 1.53001 * 117.49916 * 254.14638 * 11 10 9 21 21 C 1.52996 * 117.50001 * 185.52302 * 11 10 9 22 22 C 1.52994 * 109.47306 * 284.69723 * 7 6 5 23 23 C 1.52997 * 109.47332 * 55.34131 * 22 7 6 24 24 C 1.53002 * 109.46954 * 175.34325 * 22 7 6 25 25 C 1.52999 * 109.47049 * 295.33872 * 22 7 6 26 26 O 1.42903 * 109.47151 * 296.63059 * 25 22 7 27 27 H 1.09005 * 109.46830 * 270.01585 * 1 2 3 28 28 H 1.08999 * 109.47288 * 30.01059 * 1 2 3 29 29 H 1.08996 * 109.47409 * 150.01819 * 1 2 3 30 30 H 1.07997 * 126.59584 * 0.02562 * 3 2 1 31 31 H 1.07999 * 125.99380 * 179.97438 * 4 3 2 32 32 H 1.00900 * 110.99780 * 253.30212 * 9 7 6 33 33 H 1.09006 * 109.47270 * 298.99466 * 10 9 7 34 34 H 1.09001 * 109.47274 * 58.99337 * 10 9 7 35 35 H 0.97001 * 120.00257 * 179.97438 * 15 14 12 36 36 H 1.08995 * 117.49974 * 359.97438 * 20 11 10 37 37 H 1.08998 * 117.49222 * 145.01999 * 20 11 10 38 38 H 1.09001 * 117.49971 * 214.97921 * 21 11 10 39 39 H 1.08999 * 117.50165 * 359.97438 * 21 11 10 40 40 H 1.08999 * 109.47397 * 59.99548 * 23 22 7 41 41 H 1.08995 * 109.47099 * 179.97438 * 23 22 7 42 42 H 1.09004 * 109.46892 * 300.00096 * 23 22 7 43 43 H 1.08996 * 109.47789 * 55.43115 * 24 22 7 44 44 H 1.09001 * 109.47273 * 175.43849 * 24 22 7 45 45 H 1.09008 * 109.46837 * 295.42976 * 24 22 7 46 46 H 1.08996 * 109.47411 * 56.63425 * 25 22 7 47 47 H 1.09006 * 109.47047 * 176.63202 * 25 22 7 48 48 H 0.96701 * 113.99892 * 185.04717 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6505 0.0006 5 7 3.5095 -0.6903 0.0057 6 6 2.2663 -1.0869 0.0004 7 6 1.8018 -2.5206 0.0012 8 1 0.7455 -2.5601 0.2674 9 7 2.5827 -3.2877 0.9809 10 6 1.7015 -4.0480 1.8773 11 6 2.5496 -4.8518 2.8651 12 6 3.7659 -4.1436 3.4037 13 1 4.7276 -4.2893 2.9344 14 6 3.6510 -3.3097 4.4957 15 7 2.5010 -3.2053 5.1252 16 14 5.1287 -2.3283 5.0810 17 1 5.1540 -1.0132 4.3919 18 1 5.0330 -2.1169 6.5478 19 1 6.3739 -3.0748 4.7687 20 6 2.6514 -6.3622 2.6429 21 6 1.8189 -5.8141 3.8037 22 6 1.9996 -3.1216 -1.3918 23 6 3.4615 -2.9612 -1.8136 24 6 1.6374 -4.6078 -1.3621 25 6 1.0975 -2.3968 -2.3926 26 8 -0.2713 -2.6122 -2.0431 27 1 -0.3633 0.0003 1.0277 28 1 -0.3634 0.8899 -0.5140 29 1 -0.3634 -0.8901 -0.5135 30 1 1.9613 2.1346 0.0004 31 1 4.4368 1.2611 0.0003 32 1 3.2425 -3.8966 0.5204 33 1 1.0597 -3.3589 2.4263 34 1 1.0853 -4.7286 1.2898 35 1 2.4203 -2.6190 5.8937 36 1 2.1139 -6.7833 1.7933 37 1 3.5985 -6.8438 2.8862 38 1 2.2182 -5.9353 4.8106 39 1 0.7340 -5.8742 3.7178 40 1 4.1042 -3.4775 -1.1005 41 1 3.6024 -3.3898 -2.8058 42 1 3.7195 -1.9024 -1.8347 43 1 0.6220 -4.7270 -0.9841 44 1 1.7002 -5.0174 -2.3703 45 1 2.3322 -5.1382 -0.7107 46 1 1.3145 -1.3289 -2.3704 47 1 1.2819 -2.7842 -3.3947 48 1 -0.9017 -2.2459 -2.6783 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602884223.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:48 Heat of formation + Delta-G solvation = 46.935431 kcal Electronic energy + Delta-G solvation = -27718.715660 eV Core-core repulsion = 24197.038626 eV Total energy + Delta-G solvation = -3521.677034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.76036 -38.74983 -36.77286 -35.56868 -33.62032 -32.38094 -31.64685 -29.66194 -26.92365 -26.89121 -26.10309 -26.01323 -24.98148 -23.02580 -20.96084 -20.82719 -20.02669 -19.05587 -18.18593 -17.45997 -16.66855 -16.29793 -15.79551 -15.04957 -14.65045 -14.43371 -14.37256 -14.01080 -13.70875 -13.52534 -13.07720 -13.06071 -12.80054 -12.61559 -12.47008 -12.37214 -12.16700 -11.94578 -11.70646 -11.42720 -11.29103 -10.87746 -10.73994 -10.67679 -10.54807 -10.44904 -10.30663 -10.03988 -10.00577 -9.32356 -9.24378 -9.09391 -8.79392 -8.16709 -7.93835 -7.86275 -7.33916 -5.78587 -3.78787 2.44785 3.13473 3.49375 3.55609 3.59983 3.66809 4.12386 4.64331 4.73308 4.80991 4.87534 4.91468 5.13506 5.19994 5.25991 5.34376 5.42627 5.48346 5.50264 5.56763 5.58715 5.66285 5.82445 5.87291 5.88068 6.07907 6.15984 6.19770 6.25053 6.29425 6.40193 6.47220 6.60792 6.63627 6.71233 6.73301 6.84195 7.04496 7.20654 7.23642 7.47580 7.51097 7.60055 7.65873 8.10735 8.13080 8.36585 8.68304 8.70788 9.17225 9.84515 11.31205 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.006284 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.610846 B = 4454.607329 C = 5624.188556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.461 5.461 3 C -0.079 4.079 4 C -0.033 4.033 5 N -0.462 5.462 6 C 0.242 3.758 7 C 0.183 3.817 8 H 0.079 0.921 9 N -0.637 5.637 10 C 0.110 3.890 11 C 0.045 3.955 12 C -0.458 4.458 13 H 0.056 0.944 14 C 0.074 3.926 15 N -0.888 5.888 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.294 1.294 19 H -0.277 1.277 20 C -0.219 4.219 21 C -0.151 4.151 22 C -0.075 4.075 23 C -0.141 4.141 24 C -0.138 4.138 25 C 0.087 3.913 26 O -0.568 6.568 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.343 0.657 33 H 0.061 0.939 34 H 0.000 1.000 35 H 0.253 0.747 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.045 0.955 48 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.836 4.861 -16.312 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.144 5.144 3 C -0.211 4.211 4 C -0.182 4.182 5 N -0.179 5.179 6 C -0.021 4.021 7 C 0.070 3.930 8 H 0.097 0.903 9 N -0.269 5.269 10 C -0.019 4.019 11 C 0.045 3.955 12 C -0.496 4.496 13 H 0.074 0.926 14 C -0.127 4.127 15 N -0.526 5.526 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.220 1.220 19 H -0.202 1.202 20 C -0.257 4.257 21 C -0.189 4.189 22 C -0.078 4.078 23 C -0.199 4.199 24 C -0.195 4.195 25 C 0.009 3.991 26 O -0.372 6.372 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.182 0.818 31 H 0.179 0.821 32 H 0.165 0.835 33 H 0.080 0.920 34 H 0.018 0.982 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.021 4.664 -15.167 16.972 hybrid contribution -0.608 1.111 -0.495 1.359 sum -6.629 5.774 -15.662 17.961 Atomic orbital electron populations 1.22104 0.77591 1.04446 1.03658 1.45278 1.07113 1.06703 1.55344 1.22481 0.91721 0.92103 1.14807 1.22288 0.95917 0.92019 1.07953 1.70303 1.18508 1.10519 1.18569 1.23383 0.85406 0.90412 1.02936 1.19680 0.96847 0.85842 0.90645 0.90305 1.59962 1.16910 1.31177 1.18857 1.21594 0.93243 0.94461 0.92572 1.18884 0.96558 0.85242 0.94851 1.20140 0.92281 1.25396 1.11817 0.92572 1.24813 0.95367 0.96295 0.96221 1.70010 1.24072 1.38115 1.20433 0.86683 0.83534 0.81281 0.76918 1.20652 1.22021 1.20174 1.23090 1.01140 1.01233 1.00201 1.22443 0.95030 1.06372 0.95080 1.21093 0.95768 0.96023 0.94897 1.21878 0.93655 1.04060 1.00280 1.21826 1.02257 0.93842 1.01622 1.22251 0.81386 0.98434 0.97030 1.86503 1.16160 1.82254 1.52311 0.90900 0.90457 0.88499 0.81823 0.82144 0.83528 0.92028 0.98248 0.93702 0.92199 0.90634 0.89786 0.92415 0.90903 0.93613 0.90677 0.91918 0.92811 0.91953 0.93904 0.93702 0.78046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 10.75 59.84 0.64 1.38 16 2 N -0.46 -7.04 3.12 -121.28 -0.38 -7.42 16 3 C -0.08 -1.16 11.58 -16.56 -0.19 -1.35 16 4 C -0.03 -0.56 11.87 -17.81 -0.21 -0.77 16 5 N -0.46 -9.04 9.35 -10.81 -0.10 -9.14 16 6 C 0.24 4.35 5.02 -155.42 -0.78 3.57 16 7 C 0.18 3.15 1.70 -68.86 -0.12 3.04 16 8 H 0.08 1.40 6.01 -51.93 -0.31 1.08 16 9 N -0.64 -13.21 5.32 -107.94 -0.57 -13.79 16 10 C 0.11 2.45 5.20 -3.82 -0.02 2.43 16 11 C 0.05 1.12 1.77 -155.66 -0.28 0.84 16 12 C -0.46 -12.78 8.16 -34.44 -0.28 -13.06 16 13 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 14 C 0.07 2.14 5.43 -17.82 -0.10 2.04 16 15 N -0.89 -26.18 12.65 55.43 0.70 -25.48 16 16 Si 0.89 22.99 29.54 -169.99 -5.02 17.97 16 17 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 18 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 19 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 20 C -0.22 -4.83 9.88 -26.73 -0.26 -5.09 16 21 C -0.15 -3.64 9.17 -26.73 -0.25 -3.88 16 22 C -0.08 -1.05 0.38 -154.51 -0.06 -1.11 16 23 C -0.14 -2.02 7.79 37.16 0.29 -1.73 16 24 C -0.14 -1.88 7.09 37.16 0.26 -1.62 16 25 C 0.09 0.99 5.65 37.16 0.21 1.20 16 26 O -0.57 -5.81 10.66 -35.23 -0.38 -6.18 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 1.05 5.43 -51.93 -0.28 0.77 16 30 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.16 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.34 6.95 5.35 -39.29 -0.21 6.74 16 33 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.00 -0.01 7.04 -51.93 -0.37 -0.37 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 38 H 0.08 2.19 8.14 -51.93 -0.42 1.77 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.15 6.64 -51.93 -0.34 0.81 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.18 5.99 -51.93 -0.31 0.87 16 43 H 0.06 0.90 7.56 -51.93 -0.39 0.51 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.92 6.78 -51.92 -0.35 0.57 16 46 H 0.04 0.52 7.23 -51.93 -0.38 0.14 16 47 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.37 2.07 9.12 45.56 0.42 2.49 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -33.22 374.15 -8.39 -41.61 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -7.15 Total: 10.90 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -1.14 Total: -14.11 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.35 Total: -55.83 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.38 Total: -6.18 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.22 -8.39 -41.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602884223.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.549 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds