Wall clock time and date at job start Fri Apr 10 2020 22:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46903 * 2 1 4 4 C 1.52997 * 109.46790 * 119.99759 * 2 1 3 5 5 H 1.09005 * 109.47282 * 300.00154 * 4 2 1 6 6 C 1.53004 * 109.47489 * 60.00191 * 4 2 1 7 7 C 1.52997 * 109.47489 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47005 * 300.00255 * 7 6 4 9 9 H 1.09005 * 109.46861 * 299.99965 * 8 7 6 10 10 C 1.50701 * 109.47251 * 180.02562 * 8 7 6 11 11 O 1.21283 * 119.99923 * 264.69188 * 10 8 7 12 12 N 1.34774 * 120.00137 * 84.69166 * 10 8 7 13 13 C 1.46922 * 120.63096 * 4.42667 * 12 10 8 14 14 C 1.52760 * 109.00897 * 233.58323 * 13 12 10 15 15 C 1.53034 * 109.38426 * 305.59010 * 14 13 12 16 16 C 1.50704 * 109.46238 * 181.25887 * 15 14 13 17 17 H 1.08000 * 120.00394 * 239.93445 * 16 15 14 18 18 C 1.37881 * 119.99804 * 59.93127 * 16 15 14 19 19 N 1.31515 * 119.99778 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99793 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47246 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47068 * 119.99866 * 20 18 16 23 23 H 1.48495 * 109.47172 * 239.99622 * 20 18 16 24 24 C 1.53041 * 109.53830 * 61.23846 * 15 14 13 25 25 C 1.46928 * 120.62745 * 184.71000 * 12 10 8 26 26 C 1.52997 * 109.47470 * 59.99530 * 8 7 6 27 27 C 1.52997 * 109.47390 * 300.00234 * 26 8 7 28 28 H 1.09007 * 109.46751 * 60.00570 * 1 2 3 29 29 H 1.09007 * 109.47239 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47871 * 300.00371 * 1 2 3 31 31 H 1.08997 * 109.47360 * 239.99514 * 2 1 3 32 32 H 1.09003 * 109.46699 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46956 * 299.99632 * 3 2 1 34 34 H 1.08991 * 109.47240 * 59.99918 * 3 2 1 35 35 H 1.08998 * 109.46621 * 59.99409 * 6 4 2 36 36 H 1.09001 * 109.46634 * 300.00183 * 6 4 2 37 37 H 1.08993 * 109.47148 * 179.97438 * 7 6 4 38 38 H 1.08997 * 109.46969 * 59.99803 * 7 6 4 39 39 H 1.08999 * 109.58877 * 353.42493 * 13 12 10 40 40 H 1.09005 * 109.58420 * 113.84705 * 13 12 10 41 41 H 1.08997 * 109.56268 * 185.55258 * 14 13 12 42 42 H 1.08995 * 109.38465 * 65.51778 * 14 13 12 43 43 H 1.08994 * 109.46409 * 301.21796 * 15 14 13 44 44 H 0.97004 * 119.99687 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.50049 * 178.68106 * 24 15 14 46 46 H 1.09001 * 109.52572 * 58.60558 * 24 15 14 47 47 H 1.09004 * 109.58497 * 246.15590 * 25 12 10 48 48 H 1.09003 * 109.58952 * 6.57655 * 25 12 10 49 49 H 1.09005 * 109.46723 * 60.00350 * 26 8 7 50 50 H 1.09005 * 109.47577 * 179.97438 * 26 8 7 51 51 H 1.08997 * 109.46969 * 299.99933 * 27 26 8 52 52 H 1.09000 * 109.47287 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2073 2.1393 6 6 1.5300 -2.1637 1.2494 7 6 2.0393 -2.8848 2.4990 8 6 3.5693 -2.8847 2.4997 9 1 3.9331 -3.3987 1.6099 10 6 4.0711 -3.5954 3.7302 11 8 4.3643 -2.9596 4.7205 12 7 4.1940 -4.9375 3.7302 13 6 3.9356 -5.7129 2.5093 14 6 2.9105 -6.8022 2.8193 15 6 3.4004 -7.6386 4.0036 16 6 2.4051 -8.7330 4.2912 17 1 1.9240 -8.7854 5.2567 18 6 2.1087 -9.6676 3.3217 19 7 2.6949 -9.6041 2.1462 20 14 0.8746 -11.0237 3.6781 21 1 0.3605 -10.8738 5.0632 22 1 -0.2550 -10.9297 2.7186 23 1 1.5364 -12.3453 3.5354 24 6 3.5452 -6.7440 5.2368 25 6 4.5829 -5.6536 4.9529 26 6 4.0793 -1.4422 2.4996 27 6 3.5699 -0.7212 1.2500 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.8933 -2.6775 0.3594 36 1 0.4399 -2.1637 1.2493 37 1 1.6757 -3.9122 2.4992 38 1 1.6756 -2.3707 3.3886 39 1 3.5439 -5.0543 1.7342 40 1 4.8620 -6.1738 2.1663 41 1 2.7853 -7.4443 1.9475 42 1 1.9560 -6.3398 3.0706 43 1 4.3664 -8.0812 3.7607 44 1 2.4861 -10.2613 1.4640 45 1 3.8716 -7.3447 6.0858 46 1 2.5851 -6.2817 5.4662 47 1 5.5631 -6.1095 4.8131 48 1 4.6181 -4.9558 5.7895 49 1 3.7155 -0.9282 3.3894 50 1 5.1694 -1.4422 2.5006 51 1 3.9337 -1.2352 0.3603 52 1 3.9329 0.3066 1.2502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335899382.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:11 Heat of formation + Delta-G solvation = -84.647633 kcal Electronic energy + Delta-G solvation = -26915.960595 eV Core-core repulsion = 23492.118034 eV Total energy + Delta-G solvation = -3423.842560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.225 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28253 -38.65087 -36.80060 -34.93504 -33.48961 -31.43188 -30.90485 -30.24704 -29.44428 -27.32225 -26.25092 -24.09844 -22.74087 -22.44664 -22.19023 -20.56026 -19.86082 -19.49780 -18.10642 -16.97876 -16.15980 -15.99049 -15.18983 -14.72036 -14.55610 -14.53647 -14.21368 -13.89070 -13.71774 -13.34380 -13.26760 -13.05073 -12.72513 -12.62084 -12.48193 -12.39038 -12.22202 -11.83958 -11.69000 -11.54504 -11.34127 -11.27620 -11.22459 -11.06653 -10.97532 -10.74131 -10.62228 -10.44189 -10.39218 -10.27962 -10.06747 -9.89252 -9.64034 -9.22012 -9.17586 -8.88094 -8.39561 -7.97211 -6.05018 -4.10908 3.02578 3.25690 3.34412 3.38529 3.52546 4.39426 4.48250 4.56988 4.64499 4.83975 4.90297 5.03159 5.19961 5.24077 5.29005 5.30600 5.43619 5.44069 5.47704 5.51097 5.55518 5.63001 5.68356 5.72380 5.80163 5.82884 5.87659 5.93113 5.96046 5.98778 6.08686 6.10565 6.13063 6.16380 6.20603 6.22341 6.27691 6.32191 6.37615 6.46944 6.49499 6.66581 6.90166 7.04209 7.15189 7.27090 7.65302 7.90527 7.97593 8.03007 8.38687 8.62693 8.92730 9.54297 11.00460 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.003419 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.796376 B = 8186.506817 C = 9294.143806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.083 4.083 5 H 0.070 0.930 6 C -0.112 4.112 7 C -0.108 4.108 8 C -0.105 4.105 9 H 0.091 0.909 10 C 0.515 3.485 11 O -0.561 6.561 12 N -0.600 5.600 13 C 0.101 3.899 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.510 4.510 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.123 4.123 25 C 0.111 3.889 26 C -0.099 4.099 27 C -0.114 4.114 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.038 0.962 43 H 0.027 0.973 44 H 0.259 0.741 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.061 0.939 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 17.471 -5.965 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.102 4.102 5 H 0.088 0.912 6 C -0.150 4.150 7 C -0.146 4.146 8 C -0.126 4.126 9 H 0.109 0.891 10 C 0.303 3.697 11 O -0.441 6.441 12 N -0.331 5.331 13 C -0.021 4.021 14 C -0.162 4.162 15 C 0.030 3.970 16 C -0.549 4.549 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.161 4.161 25 C -0.011 4.011 26 C -0.137 4.137 27 C -0.151 4.151 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.229 17.683 -5.610 18.553 hybrid contribution -0.687 -1.000 0.059 1.215 sum -0.916 16.683 -5.551 17.606 Atomic orbital electron populations 1.21907 0.95430 1.01995 1.01404 1.21143 0.95624 0.95999 0.98294 1.21898 1.01210 0.96115 1.01418 1.21241 0.95328 0.95815 0.97790 0.91188 1.21630 1.00563 0.94916 0.97857 1.21467 0.92672 1.01679 0.98775 1.21333 0.97431 0.96876 0.96967 0.89116 1.20605 0.77478 0.82081 0.89551 1.90614 1.51595 1.65904 1.35968 1.48258 1.66783 1.05590 1.12510 1.22004 1.00474 0.94448 0.85165 1.21932 0.95219 0.95085 1.03932 1.18632 0.96986 0.91954 0.89423 1.21245 1.24014 1.10446 0.99156 0.92691 1.24957 0.96203 0.97650 0.95165 1.69847 1.43006 1.35840 1.04373 0.86571 0.81262 0.82012 0.78370 1.19848 1.21056 1.21061 1.22004 0.97256 0.96133 1.00716 1.21676 0.98083 0.94651 0.86683 1.21358 1.00261 0.93574 0.98518 1.21654 0.95151 1.00342 0.97987 0.93082 0.92201 0.92817 0.91294 0.92383 0.93088 0.92819 0.91740 0.91383 0.90852 0.91559 0.91169 0.92120 0.87792 0.94289 0.95508 0.93055 0.92221 0.93040 0.92366 0.90517 0.90986 0.91990 0.92015 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.84 37.16 0.33 -0.85 16 2 C -0.09 -0.75 2.51 -90.62 -0.23 -0.98 16 3 C -0.15 -1.11 8.84 37.16 0.33 -0.78 16 4 C -0.08 -0.78 1.77 -90.62 -0.16 -0.94 16 5 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 6 C -0.11 -1.16 4.85 -26.73 -0.13 -1.29 16 7 C -0.11 -1.39 5.07 -26.73 -0.14 -1.52 16 8 C -0.10 -1.43 1.69 -91.77 -0.15 -1.58 16 9 H 0.09 1.16 6.30 -51.93 -0.33 0.83 16 10 C 0.51 9.02 6.81 -10.99 -0.07 8.94 16 11 O -0.56 -11.41 15.53 5.55 0.09 -11.32 16 12 N -0.60 -10.83 2.98 -173.03 -0.52 -11.35 16 13 C 0.10 1.79 6.19 -3.94 -0.02 1.76 16 14 C -0.12 -2.66 5.14 -26.84 -0.14 -2.80 16 15 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 16 C -0.51 -13.49 8.56 -34.44 -0.29 -13.79 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -24.16 11.31 55.43 0.63 -23.54 16 20 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 25 C 0.11 2.08 6.42 -3.71 -0.02 2.05 16 26 C -0.10 -1.21 4.73 -26.73 -0.13 -1.34 16 27 C -0.11 -1.10 4.85 -26.73 -0.13 -1.23 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 37 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.07 5.19 -51.93 -0.27 0.80 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.10 2.50 6.03 -51.93 -0.31 2.19 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.08 1.44 7.03 -51.93 -0.37 1.07 16 49 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -28.22 381.94 -10.19 -38.41 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -9.73 Total: 0.88 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.39 Total: -14.52 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.11 Total: -34.88 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.22 -10.19 -38.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335899382.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.239 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds