Wall clock time and date at job start Fri Apr 10 2020 22:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46899 * 2 1 4 4 C 1.52998 * 109.47373 * 240.00390 * 2 1 3 5 5 C 1.52999 * 109.47424 * 120.00197 * 2 1 3 6 6 N 1.46491 * 109.47102 * 54.67795 * 5 2 1 7 7 C 1.46501 * 120.00108 * 274.00439 * 6 5 2 8 8 C 1.50698 * 109.47090 * 270.00211 * 7 6 5 9 9 H 1.07992 * 120.00146 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99935 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00010 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00077 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47214 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47330 * 119.99750 * 12 10 8 15 15 H 1.48504 * 109.47275 * 239.99679 * 12 10 8 16 16 C 1.34775 * 120.00056 * 94.00632 * 6 5 2 17 17 O 1.21290 * 120.00013 * 185.09373 * 16 6 5 18 18 C 1.50692 * 120.00289 * 5.09537 * 16 6 5 19 19 H 1.09004 * 115.55458 * 278.47530 * 18 16 6 20 20 C 1.53037 * 117.50663 * 64.16496 * 18 16 6 21 21 C 1.52810 * 59.96386 * 107.50889 * 20 18 16 22 22 C 1.53143 * 117.75159 * 107.63708 * 21 20 18 23 23 C 1.53178 * 108.88789 * 199.61813 * 22 21 20 24 24 C 1.52941 * 109.45301 * 303.43396 * 23 22 21 25 25 C 1.52948 * 109.81800 * 62.97938 * 24 23 22 26 26 C 1.53155 * 117.74967 * 252.37145 * 21 20 18 27 27 H 1.08992 * 109.46940 * 299.99339 * 1 2 3 28 28 H 1.08995 * 109.47365 * 60.00234 * 1 2 3 29 29 H 1.09003 * 109.46709 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46844 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.46921 * 300.00038 * 3 2 1 32 32 H 1.09002 * 109.46619 * 60.00034 * 3 2 1 33 33 H 1.09003 * 109.47088 * 304.23155 * 4 2 1 34 34 H 1.09005 * 109.47268 * 64.23119 * 4 2 1 35 35 H 1.08999 * 109.47615 * 184.22492 * 4 2 1 36 36 H 1.08995 * 109.46786 * 294.67575 * 5 2 1 37 37 H 1.09005 * 109.47092 * 174.67748 * 5 2 1 38 38 H 1.09002 * 109.47141 * 30.00036 * 7 6 5 39 39 H 1.09000 * 109.47529 * 149.99548 * 7 6 5 40 40 H 0.96999 * 120.00449 * 179.97438 * 11 10 8 41 41 H 1.08997 * 117.50905 * 214.98644 * 20 18 16 42 42 H 1.08999 * 117.50065 * 0.03240 * 20 18 16 43 43 H 1.09001 * 109.56805 * 319.43751 * 22 21 20 44 44 H 1.08999 * 109.57236 * 79.79619 * 22 21 20 45 45 H 1.09006 * 109.47486 * 183.44433 * 23 22 21 46 46 H 1.09000 * 109.47829 * 63.42976 * 23 22 21 47 47 H 1.08999 * 109.41206 * 302.87639 * 24 23 22 48 48 H 1.08995 * 109.41219 * 183.09193 * 24 23 22 49 49 H 1.09009 * 109.47353 * 177.01980 * 25 24 23 50 50 H 1.08996 * 109.47245 * 57.01114 * 25 24 23 51 51 H 1.08992 * 109.56964 * 280.19885 * 26 21 20 52 52 H 1.09007 * 109.56717 * 40.43693 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0401 -0.7213 1.2492 6 7 1.4500 -2.0605 1.3149 7 6 0.1374 -2.2529 1.9365 8 6 0.3141 -2.5333 3.4066 9 1 1.3049 -2.5653 3.8350 10 6 -0.7894 -2.7488 4.2048 11 7 -1.9960 -2.7093 3.6832 12 14 -0.5705 -3.0956 6.0272 13 1 0.8760 -3.0855 6.3628 14 1 -1.2698 -2.0507 6.8174 15 1 -1.1438 -4.4270 6.3501 16 6 2.1146 -3.1156 0.8036 17 8 1.5881 -4.2078 0.7744 18 6 3.5120 -2.9383 0.2682 19 1 3.5806 -2.5438 -0.7456 20 6 4.6027 -2.5294 1.2608 21 6 4.5695 -3.9521 0.7041 22 6 5.6426 -4.3439 -0.3159 23 6 5.1636 -5.5749 -1.0915 24 6 4.8468 -6.7040 -0.1098 25 6 3.6989 -6.2847 0.8099 26 6 4.1311 -5.0767 1.6467 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9563 0.8900 33 1 1.6161 -1.7246 -1.2881 34 1 1.7400 -0.1653 -2.1377 35 1 3.1274 -0.7872 -1.2123 36 1 1.7567 -0.1554 2.1366 37 1 3.1259 -0.8045 1.2027 38 1 -0.4612 -1.3511 1.8080 39 1 -0.3684 -3.0950 1.4642 40 1 -2.7723 -2.8613 4.2446 41 1 5.3887 -1.8660 0.9001 42 1 4.3095 -2.3892 2.3012 43 1 5.8077 -3.5179 -1.0077 44 1 6.5718 -4.5785 0.2035 45 1 5.9459 -5.8990 -1.7779 46 1 4.2663 -5.3221 -1.6564 47 1 5.7307 -6.9213 0.4899 48 1 4.5588 -7.5966 -0.6651 49 1 3.4426 -7.1122 1.4716 50 1 2.8301 -6.0180 0.2082 51 1 4.9636 -5.3582 2.2914 52 1 3.2952 -4.7358 2.2577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344490095.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:49 Heat of formation + Delta-G solvation = -58.101011 kcal Electronic energy + Delta-G solvation = -28062.350222 eV Core-core repulsion = 24639.658809 eV Total energy + Delta-G solvation = -3422.691413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.225 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63242 -39.54651 -38.16110 -35.79819 -35.57685 -34.21688 -31.71541 -30.15754 -28.49582 -28.10083 -28.02747 -26.96359 -25.55001 -23.65409 -23.58806 -21.97030 -20.68032 -19.99927 -18.82601 -18.48940 -17.61128 -17.13371 -16.75115 -16.30693 -16.06033 -15.38511 -15.28227 -15.10952 -14.70731 -14.58503 -14.50985 -14.27770 -14.00199 -13.74270 -13.52439 -13.36089 -13.17314 -13.07762 -12.95450 -12.74483 -12.62788 -12.57020 -12.53230 -12.47186 -12.17288 -12.01546 -11.94912 -11.86389 -11.67616 -11.56074 -11.50123 -11.38674 -11.01207 -10.79418 -10.62363 -10.50636 -10.22307 -9.27235 -8.22093 -6.36621 1.31521 1.33888 1.45332 1.92737 2.30329 2.44523 2.80515 3.06330 3.60169 3.74503 3.81811 3.92528 3.94478 4.01069 4.03359 4.20235 4.24555 4.37282 4.48508 4.52911 4.57978 4.62698 4.66832 4.79699 4.81332 4.82866 4.83952 4.91229 4.95416 4.97136 5.02947 5.07576 5.08093 5.09673 5.12097 5.18534 5.19419 5.23247 5.27406 5.35790 5.38234 5.39031 5.45835 5.48695 5.54701 5.56286 5.62249 5.66959 5.95139 6.10887 6.72421 6.92614 7.29552 7.62673 8.84082 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.006128 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.837505 B = 4568.463515 C = 6398.391688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.135 4.135 5 C 0.115 3.885 6 N -0.591 5.591 7 C 0.261 3.739 8 C -0.537 4.537 9 H 0.048 0.952 10 C 0.008 3.992 11 N -0.928 5.928 12 Si 0.962 3.038 13 H -0.268 1.268 14 H -0.268 1.268 15 H -0.283 1.283 16 C 0.530 3.470 17 O -0.589 6.589 18 C -0.180 4.180 19 H 0.148 0.852 20 C -0.145 4.145 21 C -0.092 4.092 22 C -0.071 4.071 23 C -0.115 4.115 24 C -0.111 4.111 25 C -0.115 4.115 26 C -0.080 4.080 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.028 0.972 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.023 0.977 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.035 0.965 39 H -0.013 1.013 40 H 0.266 0.734 41 H 0.142 0.858 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.042 0.958 50 H 0.046 0.954 51 H 0.073 0.927 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.433 4.723 -10.322 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C -0.187 4.187 4 C -0.192 4.192 5 C -0.008 4.008 6 N -0.321 5.321 7 C 0.140 3.860 8 C -0.576 4.576 9 H 0.066 0.934 10 C -0.190 4.190 11 N -0.568 5.568 12 Si 0.786 3.214 13 H -0.192 1.192 14 H -0.193 1.193 15 H -0.209 1.209 16 C 0.319 3.681 17 O -0.470 6.470 18 C -0.201 4.201 19 H 0.165 0.835 20 C -0.182 4.182 21 C -0.092 4.092 22 C -0.108 4.108 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.117 4.117 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.053 0.947 39 H 0.005 0.995 40 H 0.074 0.926 41 H 0.160 0.840 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.061 0.939 50 H 0.065 0.935 51 H 0.091 0.909 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 17.951 4.161 -10.279 21.100 hybrid contribution -1.438 -0.545 1.360 2.053 sum 16.513 3.616 -8.919 19.113 Atomic orbital electron populations 1.21948 0.96223 1.00377 1.01054 1.20969 0.94883 0.97112 0.95309 1.21744 1.01968 0.92705 1.02261 1.21943 1.01622 0.98819 0.96821 1.21857 0.99130 0.82039 0.97746 1.48046 1.19883 1.07890 1.56277 1.18831 0.80613 0.95561 0.91028 1.21755 0.92601 1.48500 0.94768 0.93361 1.25802 0.94733 0.94964 1.03527 1.70061 0.98531 1.50650 1.37563 0.85455 0.78414 0.77948 0.79544 1.19216 1.19309 1.20892 1.20283 0.87498 0.83331 0.76983 1.90605 1.70359 1.27298 1.58755 1.22461 0.87415 1.08506 1.01693 0.83490 1.23250 0.99365 0.97941 0.97641 1.21656 0.97622 0.90207 0.99724 1.21182 0.95720 0.98254 0.95642 1.21518 1.01051 0.95077 0.97642 1.21468 0.97660 0.98278 0.97435 1.21447 0.98984 0.96444 0.98368 1.21035 0.98961 0.95069 0.96632 0.93932 0.91684 0.95328 0.90501 0.91374 0.92951 0.95774 0.91343 0.90226 0.92159 0.87855 0.94691 0.99489 0.92553 0.83992 0.90378 0.89600 0.89520 0.89599 0.93667 0.90893 0.92051 0.93878 0.93538 0.90891 0.95929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 7.02 71.98 0.50 -4.12 16 2 C -0.08 -2.21 0.85 -52.18 -0.04 -2.26 16 3 C -0.13 -2.53 8.47 71.98 0.61 -1.92 16 4 C -0.14 -3.25 6.78 71.98 0.49 -2.76 16 5 C 0.12 3.75 4.54 86.38 0.39 4.15 16 6 N -0.59 -25.70 1.99 -826.18 -1.64 -27.34 16 7 C 0.26 14.45 3.94 85.63 0.34 14.79 16 8 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 9 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 10 C 0.01 0.50 5.46 84.66 0.46 0.96 16 11 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 12 Si 0.96 46.23 29.54 68.60 2.03 48.25 16 13 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 16 C 0.53 22.67 5.03 87.65 0.44 23.12 16 17 O -0.59 -31.24 13.20 -3.06 -0.04 -31.28 16 18 C -0.18 -5.30 3.86 -11.58 -0.04 -5.35 16 19 H 0.15 3.60 5.73 -2.38 -0.01 3.59 16 20 C -0.15 -3.42 7.76 30.54 0.24 -3.19 16 21 C -0.09 -2.40 1.97 -52.20 -0.10 -2.51 16 22 C -0.07 -1.29 5.67 30.70 0.17 -1.12 16 23 C -0.12 -2.31 5.93 30.63 0.18 -2.12 16 24 C -0.11 -2.57 5.82 30.56 0.18 -2.39 16 25 C -0.11 -3.76 5.72 30.64 0.18 -3.58 16 26 C -0.08 -2.63 4.91 30.70 0.15 -2.47 16 27 H 0.04 1.50 7.75 -2.39 -0.02 1.48 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.03 1.16 5.87 -2.39 -0.01 1.15 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.02 0.73 6.59 -2.39 -0.02 0.71 16 34 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.08 1.49 6.69 -2.39 -0.02 1.47 16 36 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16 37 H 0.10 2.72 5.09 -2.38 -0.01 2.71 16 38 H 0.04 1.96 5.54 -2.39 -0.01 1.95 16 39 H -0.01 -0.85 7.36 -2.39 -0.02 -0.87 16 40 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.09 1.20 8.09 -2.39 -0.02 1.18 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 50 H 0.05 1.86 6.47 -2.39 -0.02 1.85 16 51 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 52 H 0.02 0.96 6.46 -2.38 -0.02 0.94 16 Total: -1.00 -75.52 382.30 5.88 -69.65 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.87 Total: 20.39 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 4.38 Total: -22.37 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -1.36 Total: -84.63 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.04 Total: -31.28 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -75.52 5.88 -69.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344490095.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.544 kcal (2) G-P(sol) polarization free energy of solvation -75.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds