Wall clock time and date at job start Fri Apr 10 2020 22:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00339 * 2 1 4 4 N 1.34785 * 119.99798 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99813 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46942 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.46798 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.50086 * 304.91907 * 7 6 5 9 9 C 1.53122 * 109.50351 * 65.00220 * 7 6 5 10 10 C 1.53120 * 109.15802 * 177.63564 * 9 7 6 11 11 C 1.53043 * 109.27673 * 302.34124 * 10 9 7 12 12 N 1.46844 * 109.52408 * 59.18157 * 11 10 9 13 13 C 1.46904 * 111.00281 * 174.15891 * 12 11 10 14 14 C 1.52998 * 109.46914 * 294.09780 * 13 12 11 15 15 H 1.08998 * 109.47438 * 56.95016 * 14 13 12 16 16 C 1.47205 * 109.47039 * 296.94545 * 14 13 12 17 17 N 9.90163 * 151.40102 * 214.77452 * 2 1 3 18 18 C 1.52997 * 109.47001 * 176.95170 * 14 13 12 19 19 C 1.50701 * 109.47631 * 184.99692 * 18 14 13 20 20 H 1.08005 * 119.99431 * 359.97438 * 19 18 14 21 21 C 1.37871 * 120.00530 * 179.97438 * 19 18 14 22 22 N 1.31519 * 119.99905 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46816 * 60.00094 * 23 21 19 25 25 H 1.48502 * 109.46889 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46998 * 299.99912 * 23 21 19 27 27 C 1.46851 * 111.19944 * 298.25918 * 12 11 10 28 28 H 1.08997 * 109.46933 * 240.00183 * 1 2 3 29 29 H 1.08997 * 109.46613 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47226 * 120.00528 * 1 2 3 31 31 H 0.96997 * 119.99908 * 359.97438 * 4 2 1 32 32 H 1.09004 * 109.47278 * 59.99588 * 5 4 2 33 33 H 1.09002 * 109.47309 * 299.99743 * 5 4 2 34 34 H 1.08994 * 109.46995 * 59.99998 * 6 5 4 35 35 H 1.08997 * 109.47305 * 299.99714 * 6 5 4 36 36 H 1.08989 * 109.52200 * 57.72651 * 9 7 6 37 37 H 1.08997 * 109.51926 * 297.53186 * 9 7 6 38 38 H 1.09003 * 109.50243 * 182.40617 * 10 9 7 39 39 H 1.08997 * 109.50838 * 62.27854 * 10 9 7 40 40 H 1.09002 * 109.46377 * 299.16505 * 11 10 9 41 41 H 1.09004 * 109.45959 * 179.19733 * 11 10 9 42 42 H 1.09003 * 109.46402 * 54.09366 * 13 12 11 43 43 H 1.09001 * 109.46999 * 174.09242 * 13 12 11 44 44 H 1.09007 * 109.47156 * 304.99882 * 18 14 13 45 45 H 1.09005 * 109.47363 * 64.99451 * 18 14 13 46 46 H 0.97001 * 120.00007 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.46103 * 181.75700 * 27 12 11 48 48 H 1.09002 * 109.46052 * 301.72623 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1558 -2.6098 0.0023 7 6 5.6859 -2.6098 0.0022 8 1 6.0497 -2.0223 -0.8408 9 6 6.1971 -1.9988 1.3098 10 6 7.7272 -2.0565 1.3271 11 6 8.1797 -3.5099 1.1686 12 7 7.6659 -4.0486 -0.0972 13 6 8.1946 -5.3959 -0.3492 14 6 9.7065 -5.3173 -0.5705 15 1 10.1766 -4.8506 0.2951 16 6 9.9853 -4.5147 -1.7726 17 7 10.2006 -3.8932 -2.7033 18 6 10.2685 -6.7279 -0.7575 19 6 11.7710 -6.6616 -0.8528 20 1 12.2747 -5.7084 -0.7870 21 6 12.5028 -7.8175 -1.0239 22 7 11.8895 -8.9782 -1.1035 23 14 14.3651 -7.7350 -1.1428 24 1 14.9149 -7.1436 0.1035 25 1 14.9107 -9.1044 -1.3229 26 1 14.7502 -6.8917 -2.3028 27 6 6.1976 -4.0471 -0.1179 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3632 1.0277 0.0005 30 1 -0.3633 -0.5139 -0.8899 31 1 1.6959 -2.0073 0.0013 32 1 4.0089 -0.6532 0.8911 33 1 4.0096 -0.6537 -0.8889 34 1 3.7928 -3.1242 -0.8875 35 1 3.7922 -3.1231 0.8924 36 1 5.8017 -2.5628 2.1545 37 1 5.8711 -0.9610 1.3789 38 1 8.0956 -1.6619 2.2740 39 1 8.1232 -1.4605 0.5049 40 1 7.7949 -4.1027 1.9984 41 1 9.2689 -3.5529 1.1661 42 1 7.9857 -6.0345 0.5091 43 1 7.7186 -5.8128 -1.2367 44 1 9.9855 -7.3476 0.0935 45 1 9.8652 -7.1614 -1.6727 46 1 12.4043 -9.7915 -1.2236 47 1 5.8471 -4.4804 -1.0547 48 1 5.8220 -4.6374 0.7180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347670983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:52 Heat of formation + Delta-G solvation = -41.419192 kcal Electronic energy + Delta-G solvation = -24805.562248 eV Core-core repulsion = 21280.053870 eV Total energy + Delta-G solvation = -3525.508378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00457 -39.34748 -36.84449 -35.61983 -34.18846 -33.31886 -32.27081 -31.23537 -30.49161 -28.05120 -26.86257 -24.79668 -23.42365 -22.64648 -21.75827 -21.19954 -20.70104 -19.74074 -17.15710 -16.74581 -16.52791 -16.40965 -16.06022 -15.65574 -15.05272 -14.67589 -14.49374 -14.42468 -14.27831 -13.84868 -13.50155 -13.25521 -13.11698 -12.93748 -12.71952 -12.56420 -12.30600 -12.23877 -12.04463 -11.85853 -11.61871 -11.46619 -11.23107 -11.09726 -11.05121 -10.78761 -10.73241 -10.58576 -10.50776 -10.30289 -10.23216 -10.01927 -9.52313 -9.41848 -9.22707 -8.45838 -8.17768 -6.10074 -4.13184 2.29609 2.85735 3.30852 3.35056 3.38979 3.73126 3.83364 3.95015 4.37747 4.40847 4.48540 4.57808 4.70469 4.82746 4.88972 4.91743 4.93183 4.99021 5.13047 5.26265 5.28011 5.34367 5.37262 5.41671 5.49371 5.54671 5.56811 5.61873 5.69029 5.75271 5.81044 5.86864 5.99342 6.01854 6.05417 6.10188 6.16751 6.34483 6.38306 6.51454 7.11933 7.19443 7.21894 7.41644 7.52268 7.85025 7.86620 8.22787 8.61190 8.91283 9.52225 11.00745 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.035231 B = 0.002153 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.572964 B =13000.037346 C =13113.109215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.507 3.493 3 O -0.547 6.547 4 N -0.733 5.733 5 C 0.116 3.884 6 C -0.125 4.125 7 C -0.081 4.081 8 H 0.082 0.918 9 C -0.117 4.117 10 C -0.117 4.117 11 C 0.050 3.950 12 N -0.541 5.541 13 C 0.064 3.936 14 C 0.011 3.989 15 H 0.100 0.900 16 C 0.256 3.744 17 N -0.480 5.480 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.892 3.108 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.277 1.277 27 C 0.064 3.936 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.401 0.599 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.026 0.974 46 H 0.263 0.737 47 H 0.073 0.927 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.575 10.756 7.552 26.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.294 3.706 3 O -0.425 6.425 4 N -0.385 5.385 5 C -0.007 4.007 6 C -0.163 4.163 7 C -0.101 4.101 8 H 0.101 0.899 9 C -0.154 4.154 10 C -0.155 4.155 11 C -0.078 4.078 12 N -0.266 5.266 13 C -0.065 4.065 14 C -0.011 4.011 15 H 0.117 0.883 16 C -0.061 4.061 17 N -0.157 5.157 18 C -0.007 4.007 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.140 4.140 22 N -0.531 5.531 23 Si 0.719 3.281 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.064 4.064 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.235 0.765 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -21.609 12.570 5.750 25.652 hybrid contribution 0.516 -1.359 0.896 1.708 sum -21.092 11.211 6.646 24.794 Atomic orbital electron populations 1.21922 0.91696 1.05573 1.04237 1.20843 0.90664 0.83511 0.75618 1.90741 1.70941 1.31470 1.49315 1.46110 1.07784 1.08752 1.75859 1.21456 0.79049 0.97512 1.02708 1.21797 0.96259 0.95462 1.02785 1.21110 0.92787 0.97016 0.99139 0.89925 1.21696 0.96120 1.00688 0.96943 1.21580 0.95307 0.96676 1.01945 1.22177 1.00873 0.94995 0.89725 1.61909 1.07231 1.23534 1.33891 1.22213 0.94511 0.88267 1.01482 1.19251 0.94217 0.97778 0.89881 0.88274 1.28980 0.91245 0.91773 0.94063 1.81132 1.10526 1.12064 1.11993 1.19166 0.95999 0.86918 0.98604 1.21100 0.91345 0.93223 1.50750 0.92568 1.24950 0.98656 0.95424 0.94936 1.69929 1.35763 0.97877 1.49486 0.86651 0.85507 0.77102 0.78805 1.20069 1.21200 1.20217 1.22043 0.87860 0.95612 1.00869 0.89415 0.88994 0.89381 0.76523 0.91164 0.91379 0.91049 0.91251 0.92237 0.91807 0.91605 0.91108 0.94760 0.89996 0.92943 0.90246 0.94507 0.95588 0.92757 0.90816 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.32 36.01 0.37 -0.38 16 2 C 0.51 4.36 7.94 -10.98 -0.09 4.28 16 3 O -0.55 -7.49 17.09 5.56 0.09 -7.40 16 4 N -0.73 -4.81 5.56 -60.29 -0.33 -5.15 16 5 C 0.12 0.91 5.43 -4.04 -0.02 0.89 16 6 C -0.12 -0.82 4.80 -26.73 -0.13 -0.95 16 7 C -0.08 -0.72 2.35 -90.53 -0.21 -0.94 16 8 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 9 C -0.12 -1.03 4.98 -26.61 -0.13 -1.16 16 10 C -0.12 -1.20 6.09 -26.65 -0.16 -1.37 16 11 C 0.05 0.59 5.29 -3.83 -0.02 0.57 16 12 N -0.54 -7.02 4.30 -234.65 -1.01 -8.03 16 13 C 0.06 0.93 4.34 -3.82 -0.02 0.91 16 14 C 0.01 0.19 2.11 -93.41 -0.20 0.00 16 15 H 0.10 1.71 6.30 -51.93 -0.33 1.38 16 16 C 0.26 5.36 13.63 -20.64 -0.28 5.08 16 17 N -0.48 -10.96 18.56 42.30 0.79 -10.18 16 18 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 19 C -0.53 -13.95 8.60 -34.44 -0.30 -14.24 16 20 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 23 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 27 C 0.06 0.67 4.75 -3.83 -0.02 0.65 16 28 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.45 8.12 -51.93 -0.42 0.02 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.40 1.42 8.47 -40.82 -0.35 1.07 16 32 H 0.07 0.63 6.62 -51.93 -0.34 0.28 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.49 8.14 -51.94 -0.42 0.07 16 37 H 0.06 0.54 6.69 -51.93 -0.35 0.19 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 1.04 6.16 -51.93 -0.32 0.72 16 42 H 0.05 0.71 8.12 -51.93 -0.42 0.28 16 43 H 0.08 1.16 7.99 -51.93 -0.41 0.75 16 44 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.07 0.76 8.01 -51.93 -0.42 0.35 16 48 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -33.32 388.41 -8.71 -42.03 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -8.39 Total: -4.29 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.42 Total: -4.44 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.18 Total: -48.01 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.09 Total: -7.40 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.32 -8.71 -42.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347670983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.610 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds