Wall clock time and date at job start Fri Apr 10 2020 22:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00339 * 2 1 4 4 N 1.34785 * 119.99798 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99813 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46942 * 179.97438 * 5 4 2 7 7 C 1.53005 * 109.46798 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.50086 * 304.91907 * 7 6 5 9 9 C 1.53122 * 109.50351 * 65.00220 * 7 6 5 10 10 C 1.53120 * 109.15802 * 177.63564 * 9 7 6 11 11 C 1.53043 * 109.27673 * 302.34124 * 10 9 7 12 12 N 1.46844 * 109.52408 * 59.18157 * 11 10 9 13 13 C 1.46904 * 111.00281 * 174.15891 * 12 11 10 14 14 C 1.52998 * 109.46914 * 294.09780 * 13 12 11 15 15 H 1.08998 * 109.47438 * 56.95016 * 14 13 12 16 16 C 1.47205 * 109.47039 * 296.94545 * 14 13 12 17 17 N 9.90163 * 151.40102 * 214.77452 * 2 1 3 18 18 C 1.52997 * 109.47001 * 176.95170 * 14 13 12 19 19 C 1.50701 * 109.47631 * 184.99692 * 18 14 13 20 20 H 1.08005 * 119.99431 * 359.97438 * 19 18 14 21 21 C 1.37871 * 120.00530 * 179.97438 * 19 18 14 22 22 N 1.31519 * 119.99905 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46816 * 60.00094 * 23 21 19 25 25 H 1.48502 * 109.46889 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46998 * 299.99912 * 23 21 19 27 27 C 1.46851 * 111.19944 * 298.25918 * 12 11 10 28 28 H 1.08997 * 109.46933 * 240.00183 * 1 2 3 29 29 H 1.08997 * 109.46613 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.47226 * 120.00528 * 1 2 3 31 31 H 0.96997 * 119.99908 * 359.97438 * 4 2 1 32 32 H 1.09004 * 109.47278 * 59.99588 * 5 4 2 33 33 H 1.09002 * 109.47309 * 299.99743 * 5 4 2 34 34 H 1.08994 * 109.46995 * 59.99998 * 6 5 4 35 35 H 1.08997 * 109.47305 * 299.99714 * 6 5 4 36 36 H 1.08989 * 109.52200 * 57.72651 * 9 7 6 37 37 H 1.08997 * 109.51926 * 297.53186 * 9 7 6 38 38 H 1.09003 * 109.50243 * 182.40617 * 10 9 7 39 39 H 1.08997 * 109.50838 * 62.27854 * 10 9 7 40 40 H 1.09002 * 109.46377 * 299.16505 * 11 10 9 41 41 H 1.09004 * 109.45959 * 179.19733 * 11 10 9 42 42 H 1.09003 * 109.46402 * 54.09366 * 13 12 11 43 43 H 1.09001 * 109.46999 * 174.09242 * 13 12 11 44 44 H 1.09007 * 109.47156 * 304.99882 * 18 14 13 45 45 H 1.09005 * 109.47363 * 64.99451 * 18 14 13 46 46 H 0.97001 * 120.00007 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.46103 * 181.75700 * 27 12 11 48 48 H 1.09002 * 109.46052 * 301.72623 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1558 -2.6098 0.0023 7 6 5.6859 -2.6098 0.0022 8 1 6.0497 -2.0223 -0.8408 9 6 6.1971 -1.9988 1.3098 10 6 7.7272 -2.0565 1.3271 11 6 8.1797 -3.5099 1.1686 12 7 7.6659 -4.0486 -0.0972 13 6 8.1946 -5.3959 -0.3492 14 6 9.7065 -5.3173 -0.5705 15 1 10.1766 -4.8506 0.2951 16 6 9.9853 -4.5147 -1.7726 17 7 10.2006 -3.8932 -2.7033 18 6 10.2685 -6.7279 -0.7575 19 6 11.7710 -6.6616 -0.8528 20 1 12.2747 -5.7084 -0.7870 21 6 12.5028 -7.8175 -1.0239 22 7 11.8895 -8.9782 -1.1035 23 14 14.3651 -7.7350 -1.1428 24 1 14.9149 -7.1436 0.1035 25 1 14.9107 -9.1044 -1.3229 26 1 14.7502 -6.8917 -2.3028 27 6 6.1976 -4.0471 -0.1179 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3632 1.0277 0.0005 30 1 -0.3633 -0.5139 -0.8899 31 1 1.6959 -2.0073 0.0013 32 1 4.0089 -0.6532 0.8911 33 1 4.0096 -0.6537 -0.8889 34 1 3.7928 -3.1242 -0.8875 35 1 3.7922 -3.1231 0.8924 36 1 5.8017 -2.5628 2.1545 37 1 5.8711 -0.9610 1.3789 38 1 8.0956 -1.6619 2.2740 39 1 8.1232 -1.4605 0.5049 40 1 7.7949 -4.1027 1.9984 41 1 9.2689 -3.5529 1.1661 42 1 7.9857 -6.0345 0.5091 43 1 7.7186 -5.8128 -1.2367 44 1 9.9855 -7.3476 0.0935 45 1 9.8652 -7.1614 -1.6727 46 1 12.4043 -9.7915 -1.2236 47 1 5.8471 -4.4804 -1.0547 48 1 5.8220 -4.6374 0.7180 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347670983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:52 Heat of formation + Delta-G solvation = -63.393160 kcal Electronic energy + Delta-G solvation = -24806.515110 eV Core-core repulsion = 21280.053870 eV Total energy + Delta-G solvation = -3526.461241 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 307.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73042 -40.23927 -38.17574 -36.64708 -35.61976 -34.82886 -33.33088 -32.57391 -31.06297 -28.96883 -28.20880 -25.99236 -24.42271 -23.60846 -23.43645 -21.99318 -21.46789 -20.51206 -18.52073 -18.13129 -17.75719 -17.20041 -16.85521 -16.69958 -16.35944 -15.81093 -15.65827 -15.39873 -15.11184 -14.77698 -14.53904 -14.41035 -14.25260 -14.10055 -13.74860 -13.61737 -13.39950 -13.19828 -13.05507 -13.00738 -12.96605 -12.72975 -12.61644 -12.43727 -12.36051 -12.27896 -11.92298 -11.86702 -11.52555 -11.39960 -11.37298 -11.09849 -10.99223 -10.83730 -10.54398 -10.08065 -9.14500 -8.19205 -6.27207 1.40763 1.42568 1.49515 1.65878 2.05702 2.13677 2.30608 2.41560 2.97308 3.16131 3.36470 3.74366 3.88488 3.93153 3.99807 4.09178 4.21658 4.29859 4.34171 4.40567 4.53485 4.56617 4.62701 4.66926 4.69352 4.71087 4.74282 4.80046 4.91470 4.93378 4.94503 5.01038 5.10306 5.10425 5.17323 5.21240 5.29998 5.42304 5.46797 5.48766 5.57099 5.62470 5.79404 6.13215 6.24989 6.29863 6.60496 6.83416 6.94526 7.29563 7.41077 8.91341 Molecular weight = 307.20amu Principal moments of inertia in cm(-1) A = 0.035231 B = 0.002153 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.572964 B =13000.037346 C =13113.109215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.498 3.502 3 O -0.608 6.608 4 N -0.719 5.719 5 C 0.119 3.881 6 C -0.110 4.110 7 C -0.077 4.077 8 H 0.060 0.940 9 C -0.112 4.112 10 C -0.115 4.115 11 C 0.049 3.951 12 N -0.558 5.558 13 C 0.075 3.925 14 C 0.021 3.979 15 H 0.114 0.886 16 C 0.267 3.733 17 N -0.517 5.517 18 C 0.039 3.961 19 C -0.539 4.539 20 H 0.052 0.948 21 C 0.012 3.988 22 N -0.922 5.922 23 Si 0.947 3.053 24 H -0.263 1.263 25 H -0.281 1.281 26 H -0.283 1.283 27 C 0.065 3.935 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.419 0.581 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.036 0.964 45 H 0.001 0.999 46 H 0.264 0.736 47 H 0.073 0.927 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.173 10.291 8.944 27.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.287 3.713 3 O -0.490 6.490 4 N -0.372 5.372 5 C -0.006 4.006 6 C -0.148 4.148 7 C -0.097 4.097 8 H 0.078 0.922 9 C -0.150 4.150 10 C -0.153 4.153 11 C -0.079 4.079 12 N -0.283 5.283 13 C -0.054 4.054 14 C -0.001 4.001 15 H 0.132 0.868 16 C -0.049 4.049 17 N -0.195 5.195 18 C 0.000 4.000 19 C -0.578 4.578 20 H 0.070 0.930 21 C -0.187 4.187 22 N -0.562 5.562 23 Si 0.773 3.227 24 H -0.188 1.188 25 H -0.206 1.206 26 H -0.208 1.208 27 C -0.063 4.063 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.256 0.744 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.073 0.927 47 H 0.092 0.908 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.232 12.071 7.152 27.140 hybrid contribution 1.009 -1.210 0.455 1.640 sum -22.223 10.861 7.606 25.878 Atomic orbital electron populations 1.21925 0.88114 1.05900 1.06542 1.21679 0.92450 0.82910 0.74256 1.90715 1.72411 1.33603 1.52273 1.46020 1.07307 1.09285 1.74563 1.21324 0.79954 0.98107 1.01174 1.21661 0.94330 0.94588 1.04206 1.21043 0.94374 0.95855 0.98413 0.92172 1.21665 0.94932 1.01062 0.97297 1.21562 0.96454 0.95507 1.01794 1.22209 1.00144 0.95917 0.89621 1.61845 1.09076 1.22391 1.34969 1.22022 0.91506 0.89711 1.02185 1.19227 0.97120 0.94601 0.89160 0.86825 1.29509 0.90122 0.91226 0.94054 1.81128 1.11900 1.13294 1.13129 1.18983 0.94272 0.89474 0.97247 1.21512 0.93374 0.92942 1.49936 0.92983 1.25694 1.02690 0.95342 0.94976 1.70020 1.37168 0.98364 1.50605 0.85770 0.80940 0.77148 0.78844 1.18778 1.20642 1.20843 1.22100 0.86064 0.96566 1.01548 0.86838 0.89750 0.87057 0.74387 0.92250 0.93600 0.90047 0.89290 0.90793 0.91690 0.90308 0.93155 0.93344 0.91340 0.91196 0.90479 0.94572 0.98012 0.92702 0.90839 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.32 71.24 0.74 -0.32 16 2 C 0.50 8.12 7.94 87.66 0.70 8.82 16 3 O -0.61 -17.07 17.09 -3.03 -0.05 -17.12 16 4 N -0.72 -8.20 5.56 -463.04 -2.57 -10.77 16 5 C 0.12 1.76 5.43 86.38 0.47 2.23 16 6 C -0.11 -1.19 4.80 30.60 0.15 -1.04 16 7 C -0.08 -1.26 2.35 -10.74 -0.03 -1.29 16 8 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 9 C -0.11 -1.77 4.98 30.68 0.15 -1.62 16 10 C -0.12 -2.23 6.09 30.65 0.19 -2.05 16 11 C 0.05 1.06 5.29 86.33 0.46 1.52 16 12 N -0.56 -13.65 4.30 -896.31 -3.86 -17.51 16 13 C 0.07 2.06 4.34 86.30 0.37 2.44 16 14 C 0.02 0.74 2.11 -12.60 -0.03 0.72 16 15 H 0.11 3.80 6.30 -2.39 -0.02 3.78 16 16 C 0.27 11.18 13.63 89.40 1.22 12.40 16 17 N -0.52 -23.81 18.56 20.05 0.37 -23.44 16 18 C 0.04 1.79 4.42 29.85 0.13 1.92 16 19 C -0.54 -28.59 8.60 25.60 0.22 -28.37 16 20 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 21 C 0.01 0.66 5.46 84.65 0.46 1.12 16 22 N -0.92 -52.62 13.29 21.45 0.28 -52.33 16 23 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 27 C 0.06 1.20 4.75 86.33 0.41 1.61 16 28 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 30 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.42 1.70 8.47 -92.71 -0.79 0.91 16 32 H 0.06 1.03 6.62 -2.38 -0.02 1.01 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.03 6.69 -2.39 -0.02 1.02 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.66 6.16 -2.38 -0.01 1.64 16 42 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 43 H 0.08 2.17 7.99 -2.39 -0.02 2.15 16 44 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 46 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 47 H 0.07 1.37 8.01 -2.39 -0.02 1.35 16 48 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -73.43 388.41 1.96 -71.46 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 0.15 Total: 6.14 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 5.61 Total: -1.92 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -5.77 Total: -104.05 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.05 Total: -17.12 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -73.43 1.96 -71.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347670983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.071 kcal (2) G-P(sol) polarization free energy of solvation -73.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds