Wall clock time and date at job start Fri Apr 10 2020 22:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47376 * 2 1 4 4 C 1.52999 * 109.47277 * 239.99577 * 2 1 3 5 5 C 1.50698 * 109.47036 * 60.00455 * 4 2 1 6 6 H 1.08004 * 119.99840 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99879 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00046 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00183 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47123 * 59.99149 * 9 7 5 11 11 H 1.48493 * 109.47251 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46735 * 299.99496 * 9 7 5 13 13 C 1.53005 * 109.46814 * 119.99296 * 2 1 3 14 14 N 1.46905 * 109.46831 * 174.39348 * 13 2 1 15 15 C 1.47583 * 110.99707 * 79.38219 * 14 13 2 16 16 C 1.52886 * 87.78134 * 138.22837 * 15 14 13 17 17 C 1.52644 * 114.16692 * 88.33322 * 16 15 14 18 18 C 1.53307 * 108.88727 * 79.92229 * 17 16 15 19 19 O 1.42891 * 109.30139 * 55.01102 * 18 17 16 20 20 C 1.42905 * 114.40502 * 296.89192 * 19 18 17 21 21 C 1.52638 * 114.16466 * 220.39879 * 16 15 14 22 22 C 1.47599 * 110.99383 * 175.49905 * 14 13 2 23 23 H 1.08998 * 113.50286 * 336.55626 * 22 14 13 24 24 C 1.52999 * 113.49789 * 107.04046 * 22 14 13 25 25 C 1.52997 * 117.49834 * 280.49160 * 24 22 14 26 26 C 1.53003 * 60.03263 * 252.52235 * 25 24 22 27 27 H 1.09002 * 109.47030 * 295.20374 * 1 2 3 28 28 H 1.09006 * 109.46904 * 55.19421 * 1 2 3 29 29 H 1.08990 * 109.47178 * 175.19702 * 1 2 3 30 30 H 1.08997 * 109.47010 * 188.36080 * 3 2 1 31 31 H 1.09004 * 109.46643 * 308.36187 * 3 2 1 32 32 H 1.08998 * 109.47332 * 68.35646 * 3 2 1 33 33 H 1.08999 * 109.46961 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.46993 * 299.99987 * 4 2 1 35 35 H 0.97003 * 120.00007 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.46989 * 54.40033 * 13 2 1 37 37 H 1.09000 * 109.47585 * 294.39883 * 13 2 1 38 38 H 1.08999 * 113.50158 * 252.95634 * 15 14 13 39 39 H 1.09004 * 113.50660 * 23.43658 * 15 14 13 40 40 H 1.09004 * 109.56458 * 199.74460 * 17 16 15 41 41 H 1.08997 * 109.56638 * 320.09553 * 17 16 15 42 42 H 1.09002 * 109.49701 * 295.06309 * 18 17 16 43 43 H 1.08996 * 109.49688 * 174.95839 * 18 17 16 44 44 H 1.08996 * 109.49981 * 303.16897 * 20 19 18 45 45 H 1.08998 * 109.52747 * 183.07657 * 20 19 18 46 46 H 1.09007 * 109.56419 * 39.90924 * 21 16 15 47 47 H 1.08999 * 109.57133 * 160.26364 * 21 16 15 48 48 H 1.09005 * 115.56328 * 66.17809 * 24 22 14 49 49 H 1.09004 * 117.49686 * 145.02303 * 25 24 22 50 50 H 1.08996 * 117.49784 * 0.02562 * 25 24 22 51 51 H 1.08994 * 117.49907 * 107.47457 * 26 25 24 52 52 H 1.09004 * 117.49768 * 252.47859 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3806 7 6 1.8705 -0.4824 -3.7318 8 7 2.6266 -1.5517 -3.8524 9 14 1.2474 0.3977 -5.2572 10 1 1.7422 1.7978 -5.2577 11 1 1.7425 -0.3023 -6.4696 12 1 -0.2376 0.3976 -5.2568 13 6 2.0399 -0.7211 1.2494 14 7 3.5027 -0.8394 1.1837 15 6 4.1537 0.4270 1.5717 16 6 5.1687 -0.4042 2.3567 17 6 6.3776 -0.8502 1.5384 18 6 7.3672 0.3164 1.4388 19 8 7.6941 0.7720 2.7531 20 6 6.5876 1.2998 3.4873 21 6 5.5518 0.1914 3.7088 22 6 4.0413 -1.4347 2.4223 23 1 3.3867 -1.3099 3.2848 24 6 4.5218 -2.8767 2.2473 25 6 3.4612 -3.9793 2.2442 26 6 4.3904 -3.8161 3.4487 27 1 -0.3633 0.4376 0.9299 28 1 -0.3633 0.5866 -0.8439 29 1 -0.3633 -1.0240 -0.0860 30 1 3.1198 1.4461 -0.1494 31 1 1.5598 1.9977 -0.8059 32 1 1.8039 1.9115 0.9552 33 1 3.1300 -0.7217 -1.2489 34 1 1.6767 -1.7490 -1.2491 35 1 2.8609 -1.8832 -4.7334 36 1 1.5970 -1.7157 1.3010 37 1 1.7608 -0.1526 2.1365 38 1 4.5906 0.9664 0.7313 39 1 3.5298 1.0613 2.2014 40 1 6.8587 -1.6962 2.0293 41 1 6.0546 -1.1414 0.5389 42 1 6.9138 1.1308 0.8736 43 1 8.2735 -0.0174 0.9335 44 1 6.1332 2.1152 2.9246 45 1 6.9342 1.6718 4.4514 46 1 4.6663 0.6096 4.1876 47 1 5.9788 -0.5860 4.3424 48 1 5.3868 -3.0086 1.5972 49 1 3.6284 -4.8366 1.5921 50 1 2.4210 -3.6773 2.3664 51 1 3.9616 -3.4063 4.3632 52 1 5.1686 -4.5662 3.5893 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354416289.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:23 Heat of formation + Delta-G solvation = -1.442934 kcal Electronic energy + Delta-G solvation = -27812.786585 eV Core-core repulsion = 24392.552051 eV Total energy + Delta-G solvation = -3420.234534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.225 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30839 -38.29485 -36.85366 -35.77969 -32.60272 -31.79882 -31.21479 -27.64628 -27.16015 -26.85806 -25.69855 -24.06126 -23.61049 -22.65565 -22.18307 -21.53273 -20.35414 -18.33817 -17.73580 -16.49479 -16.12651 -15.97198 -15.46685 -15.17221 -14.87255 -14.78022 -14.59151 -14.12999 -13.65046 -13.39798 -13.31264 -12.85951 -12.55042 -12.43043 -12.25845 -12.02041 -11.85866 -11.65973 -11.43863 -11.32273 -11.27366 -10.93291 -10.83166 -10.82375 -10.71488 -10.56738 -10.44771 -10.36177 -10.20434 -10.13985 -9.90495 -9.72382 -9.48806 -9.25563 -8.95732 -8.70566 -8.33187 -8.15881 -5.86068 -3.85956 3.37812 3.42845 3.44675 3.78685 3.87713 4.29108 4.42293 4.55024 4.64877 4.92335 4.96974 5.02968 5.09095 5.19140 5.24002 5.28890 5.34751 5.42364 5.44775 5.49253 5.56721 5.64582 5.67572 5.71232 5.73683 5.79585 5.83047 5.89935 5.97598 6.01021 6.04838 6.08881 6.21133 6.23420 6.26104 6.27884 6.34841 6.37971 6.45265 6.49409 6.71949 6.75237 6.85180 7.08957 7.21103 7.21210 7.34697 7.59870 7.88128 8.08546 8.24240 8.60143 9.21272 9.75663 11.24813 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.004453 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.333537 B = 6286.505307 C = 6811.287427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 C -0.130 4.130 4 C 0.048 3.952 5 C -0.510 4.510 6 H 0.052 0.948 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.037 3.963 14 N -0.436 5.436 15 C 0.010 3.990 16 C -0.082 4.082 17 C -0.122 4.122 18 C 0.061 3.939 19 O -0.387 6.387 20 C 0.064 3.936 21 C -0.137 4.137 22 C 0.065 3.935 23 H 0.069 0.931 24 C -0.124 4.124 25 C -0.171 4.171 26 C -0.185 4.185 27 H 0.026 0.974 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.032 0.968 34 H 0.008 0.992 35 H 0.257 0.743 36 H 0.067 0.933 37 H 0.023 0.977 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.111 0.889 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 1.481 16.800 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.057 4.057 3 C -0.187 4.187 4 C 0.011 3.989 5 C -0.549 4.549 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.710 3.290 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.205 1.205 13 C -0.092 4.092 14 N -0.156 5.156 15 C -0.119 4.119 16 C -0.082 4.082 17 C -0.160 4.160 18 C -0.016 4.016 19 O -0.306 6.306 20 C -0.012 4.012 21 C -0.175 4.175 22 C -0.044 4.044 23 H 0.087 0.913 24 C -0.143 4.143 25 C -0.208 4.208 26 C -0.222 4.222 27 H 0.045 0.955 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.129 0.871 49 H 0.111 0.889 50 H 0.108 0.892 51 H 0.106 0.894 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.434 1.054 16.059 17.332 hybrid contribution -1.194 0.737 -0.315 1.438 sum 5.240 1.791 15.744 16.689 Atomic orbital electron populations 1.21729 0.95935 1.01097 0.99589 1.20580 0.94134 0.95028 0.95966 1.21932 1.01507 0.96404 0.98812 1.18984 0.97220 0.94092 0.88600 1.21307 1.30616 1.11792 0.91150 0.92940 1.24970 0.95530 0.95112 0.98731 1.69973 1.37258 1.23099 1.23052 0.86834 0.79112 0.79847 0.83198 1.20501 1.21497 1.20521 1.22770 0.88855 1.00191 0.97354 1.68978 1.07025 1.09252 1.30379 1.23913 0.95527 0.93926 0.98536 1.21635 0.94586 0.96839 0.95168 1.21855 0.94255 0.98311 1.01575 1.22657 0.99086 0.95991 0.83829 1.87853 1.33546 1.81287 1.27888 1.22534 0.87663 0.94780 0.96271 1.22070 0.99451 0.99174 0.96852 1.22875 0.95346 0.92707 0.93521 0.91337 1.22113 1.01252 0.90141 1.00783 1.22808 0.96248 1.01012 1.00718 1.22948 1.03282 1.03123 0.92895 0.95525 0.91898 0.93579 0.92490 0.92514 0.95889 0.94918 0.97358 0.93309 0.91476 0.95917 0.89445 0.91832 0.90955 0.89003 0.92949 0.88912 0.93193 0.89336 0.91255 0.90883 0.87080 0.88875 0.89236 0.89443 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.12 37.16 0.30 -2.09 16 2 C -0.06 -1.13 0.61 -154.50 -0.09 -1.22 16 3 C -0.13 -2.42 6.84 37.16 0.25 -2.16 16 4 C 0.05 1.21 3.81 -27.88 -0.11 1.11 16 5 C -0.51 -14.05 7.79 -34.44 -0.27 -14.32 16 6 H 0.05 1.41 5.72 -52.48 -0.30 1.11 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.88 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.04 0.63 3.92 -3.82 -0.01 0.61 16 14 N -0.44 -7.08 4.96 -236.42 -1.17 -8.26 16 15 C 0.01 0.14 4.52 -7.25 -0.03 0.10 16 16 C -0.08 -1.00 0.76 -155.00 -0.12 -1.12 16 17 C -0.12 -1.53 3.92 -26.76 -0.10 -1.63 16 18 C 0.06 0.72 6.82 37.32 0.25 0.97 16 19 O -0.39 -4.80 10.72 -35.23 -0.38 -5.17 16 20 C 0.06 0.66 6.82 37.32 0.25 0.92 16 21 C -0.14 -1.42 5.39 -26.76 -0.14 -1.56 16 22 C 0.06 0.87 2.71 -71.14 -0.19 0.67 16 23 H 0.07 0.89 7.79 -51.93 -0.40 0.49 16 24 C -0.12 -1.63 5.19 -90.58 -0.47 -2.10 16 25 C -0.17 -2.23 10.25 -26.73 -0.27 -2.50 16 26 C -0.18 -2.04 10.24 -26.69 -0.27 -2.32 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 1.27 6.78 -51.93 -0.35 0.92 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.08 5.42 -51.93 -0.28 0.79 16 31 H 0.06 1.14 6.90 -51.93 -0.36 0.78 16 32 H 0.02 0.36 7.86 -51.93 -0.41 -0.04 16 33 H 0.03 0.90 7.46 -51.93 -0.39 0.51 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 37 H 0.02 0.35 7.54 -51.93 -0.39 -0.04 16 38 H 0.09 1.35 6.54 -51.93 -0.34 1.01 16 39 H 0.06 0.86 7.04 -51.93 -0.37 0.49 16 40 H 0.07 0.87 7.31 -51.93 -0.38 0.49 16 41 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 42 H 0.05 0.63 7.89 -51.93 -0.41 0.22 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.11 1.53 6.31 -51.93 -0.33 1.20 16 49 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 51 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -29.77 385.29 -10.88 -40.66 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -9.73 Total: 1.51 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -1.13 Total: -25.10 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: -0.44 Total: -34.48 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.38 Total: -5.17 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.77 -10.88 -40.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354416289.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.214 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds