Wall clock time and date at job start Fri Apr 10 2020 22:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99532 * 2 1 3 5 5 C 1.50703 * 109.46940 * 59.99972 * 4 2 1 6 6 H 1.08001 * 120.00043 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00116 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00201 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47135 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47080 * 119.99899 * 9 7 5 12 12 H 1.48502 * 109.47342 * 239.99982 * 9 7 5 13 13 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 14 14 N 1.46499 * 109.47198 * 299.99984 * 13 2 1 15 15 C 1.34777 * 119.99665 * 180.27868 * 14 13 2 16 16 O 1.21283 * 119.99990 * 359.71991 * 15 14 13 17 17 C 1.50698 * 119.99538 * 179.72653 * 15 14 13 18 18 C 1.52995 * 109.47490 * 59.99635 * 17 15 14 19 19 C 1.53775 * 113.61466 * 279.13443 * 18 17 15 20 20 C 1.53953 * 87.02037 * 220.04835 * 19 18 17 21 21 C 1.53778 * 87.11187 * 25.36394 * 20 19 18 22 22 C 1.52999 * 109.47004 * 179.97438 * 17 15 14 23 23 C 1.53780 * 113.61640 * 159.13074 * 22 17 15 24 24 C 1.53957 * 87.02320 * 220.04928 * 23 22 17 25 25 C 1.53777 * 87.10935 * 25.36467 * 24 23 22 26 26 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 27 27 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 28 28 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 31 31 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 32 32 H 1.08995 * 109.47672 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.47288 * 300.00670 * 4 2 1 34 34 H 0.97000 * 120.00572 * 179.97438 * 8 7 5 35 35 H 1.09009 * 109.46730 * 179.97438 * 13 2 1 36 36 H 1.08998 * 109.46846 * 60.00315 * 13 2 1 37 37 H 0.97001 * 119.99790 * 359.97438 * 14 13 2 38 38 H 1.09003 * 109.47112 * 299.99065 * 17 15 14 39 39 H 1.08995 * 112.84863 * 50.33344 * 18 17 15 40 40 H 1.09004 * 113.61869 * 334.56793 * 19 18 17 41 41 H 1.09000 * 113.61456 * 105.46868 * 19 18 17 42 42 H 1.09005 * 113.53408 * 270.80947 * 20 19 18 43 43 H 1.09000 * 113.74326 * 139.94446 * 20 19 18 44 44 H 1.08994 * 113.61185 * 220.08937 * 21 20 19 45 45 H 1.08996 * 113.61199 * 89.18693 * 21 20 19 46 46 H 1.08996 * 112.85315 * 290.33252 * 22 17 15 47 47 H 1.09001 * 113.61724 * 334.57132 * 23 22 17 48 48 H 1.09002 * 113.61328 * 105.47305 * 23 22 17 49 49 H 1.09000 * 113.53424 * 270.81357 * 24 23 22 50 50 H 1.08999 * 113.74111 * 139.94722 * 24 23 22 51 51 H 1.09002 * 113.61283 * 220.08988 * 25 24 23 52 52 H 1.09005 * 113.61626 * 89.18576 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8526 9 14 1.2483 0.3985 -5.2572 10 1 0.4247 1.5663 -4.8531 11 1 2.4037 0.8643 -6.0656 12 1 0.4226 -0.5343 -6.0654 13 6 2.0399 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 6 1.8818 -0.4877 3.6695 16 8 2.5790 -1.4738 3.7808 17 6 1.3845 0.2264 4.8999 18 6 -0.1454 0.2271 4.9059 19 6 -0.7644 1.3178 4.0159 20 6 -1.8062 1.5232 5.1306 21 6 -0.7564 0.9676 6.1072 22 6 1.8986 -0.4919 6.1492 23 6 1.8984 0.3886 7.4100 24 6 3.2504 -0.2573 7.7637 25 6 3.4324 -0.5158 6.2588 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 -0.7209 -1.2494 33 1 1.6766 -1.7490 -1.2492 34 1 2.8594 -1.8841 -4.7335 35 1 3.1300 -0.7216 1.2491 36 1 1.6766 -1.7488 1.2493 37 1 0.9942 0.7584 2.3564 38 1 1.7484 1.2539 4.8956 39 1 -0.5698 -0.7633 4.7417 40 1 -0.1131 2.1784 3.8630 41 1 -1.1871 0.9354 3.0869 42 1 -2.6857 0.8877 5.0268 43 1 -2.0581 2.5687 5.3086 44 1 -1.1728 0.3030 6.8641 45 1 -0.1029 1.7322 6.5272 46 1 1.4350 -1.4671 6.2977 47 1 1.9666 1.4555 7.1975 48 1 1.1006 0.1459 8.1119 49 1 3.1562 -1.1682 8.3550 50 1 3.9763 0.4427 8.1774 51 1 3.8711 -1.4877 6.0326 52 1 3.9207 0.3034 5.7309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359763611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:49 Heat of formation + Delta-G solvation = -32.813023 kcal Electronic energy + Delta-G solvation = -26764.970272 eV Core-core repulsion = 23343.375429 eV Total energy + Delta-G solvation = -3421.594843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.225 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71350 -38.58561 -38.01573 -36.89842 -33.51340 -32.13334 -30.98883 -27.13154 -26.64390 -26.50545 -25.86603 -25.41194 -24.69625 -23.39470 -22.26754 -20.08174 -19.90471 -19.04085 -18.28515 -16.95368 -16.33596 -16.01442 -15.54181 -15.50000 -15.04876 -14.58880 -14.34986 -14.29067 -13.69237 -13.34742 -13.06375 -12.78061 -12.74701 -12.62745 -12.41104 -12.32590 -12.08346 -12.06284 -11.82936 -11.51226 -11.29667 -11.12438 -11.01903 -10.83594 -10.70441 -10.64580 -10.62352 -10.54093 -10.39748 -10.35972 -10.22967 -9.88102 -9.86758 -9.47564 -9.09244 -8.89917 -8.62748 -8.36362 -6.00096 -4.01333 2.92005 3.29682 3.37757 3.39906 3.51897 4.23338 4.39047 4.43970 4.45034 4.58191 4.60466 4.69475 4.79172 4.87625 5.15594 5.18589 5.34287 5.35487 5.39305 5.50788 5.52309 5.54957 5.60478 5.63562 5.64675 5.67160 5.70915 5.75180 5.77395 5.81488 5.83679 6.03410 6.13959 6.18227 6.21765 6.25027 6.27953 6.32718 6.40876 6.44498 6.60756 6.62974 6.81790 7.06979 7.07492 7.14162 7.64523 7.76882 7.85491 7.98909 8.40558 8.55288 9.03772 9.61851 11.11407 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.003130 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.184101 B = 8944.438243 C = 9849.574286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.722 5.722 15 C 0.511 3.489 16 O -0.542 6.542 17 C -0.089 4.089 18 C -0.100 4.100 19 C -0.147 4.147 20 C -0.141 4.141 21 C -0.130 4.130 22 C -0.082 4.082 23 C -0.133 4.133 24 C -0.148 4.148 25 C -0.124 4.124 26 H 0.028 0.972 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.397 0.603 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.063 0.937 51 H 0.072 0.928 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 6.998 22.358 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.374 5.374 15 C 0.297 3.703 16 O -0.419 6.419 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.184 4.184 20 C -0.178 4.178 21 C -0.167 4.167 22 C -0.101 4.101 23 C -0.171 4.171 24 C -0.185 4.185 25 C -0.162 4.162 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.233 0.767 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.102 0.898 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.091 0.909 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.073 6.168 22.284 23.672 hybrid contribution -0.523 0.730 -1.149 1.458 sum -5.597 6.898 21.135 22.926 Atomic orbital electron populations 1.21763 0.95335 1.01106 1.00169 1.20895 0.95431 0.95796 0.95151 1.21758 1.00519 0.95969 1.00143 1.19090 0.96329 0.95212 0.89517 1.21225 1.31084 1.12010 0.90519 0.92218 1.25016 0.95335 0.95087 0.99090 1.69974 1.37060 1.23032 1.23318 0.86602 0.78605 0.79685 0.83481 1.19802 1.21141 1.21135 1.21595 0.98796 0.96000 0.83170 1.46300 1.53134 1.32093 1.05889 1.20550 0.80326 0.84841 0.84599 1.90676 1.37982 1.26403 1.86875 1.21415 0.95920 1.00318 0.93367 1.22495 0.92550 0.99199 0.97627 1.23126 0.98597 0.98718 0.97998 1.22814 0.97104 1.01241 0.96689 1.22944 0.97852 0.99696 0.96225 1.22222 0.96712 0.98887 0.92236 1.23036 0.97524 0.99135 0.97360 1.22900 0.97568 1.00710 0.97324 1.22799 0.95899 1.02519 0.94940 0.95273 0.91474 0.93412 0.93389 0.91445 0.95365 0.96382 0.96374 0.93102 0.92001 0.91998 0.76708 0.88958 0.88905 0.89911 0.90834 0.90258 0.91464 0.91520 0.89804 0.89079 0.90317 0.91576 0.90473 0.91805 0.90908 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.89 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.53 7.65 -34.44 -0.26 -13.80 16 6 H 0.06 1.52 5.68 -52.49 -0.30 1.23 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 14 N -0.72 -10.52 4.84 -60.29 -0.29 -10.81 16 15 C 0.51 7.50 6.97 -10.99 -0.08 7.42 16 16 O -0.54 -9.96 14.95 5.55 0.08 -9.88 16 17 C -0.09 -0.94 1.77 -91.78 -0.16 -1.10 16 18 C -0.10 -0.91 3.06 -89.81 -0.27 -1.18 16 19 C -0.15 -1.25 5.93 -25.83 -0.15 -1.40 16 20 C -0.14 -1.04 8.09 -25.83 -0.21 -1.25 16 21 C -0.13 -0.94 6.28 -25.92 -0.16 -1.11 16 22 C -0.08 -0.84 2.56 -89.80 -0.23 -1.07 16 23 C -0.13 -1.06 5.73 -25.83 -0.15 -1.21 16 24 C -0.15 -1.28 8.09 -25.83 -0.21 -1.49 16 25 C -0.12 -1.39 6.29 -25.92 -0.16 -1.55 16 26 H 0.03 0.41 6.80 -51.93 -0.35 0.06 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.03 0.40 6.86 -51.93 -0.36 0.05 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.40 5.01 4.37 -40.82 -0.18 4.83 16 38 H 0.09 0.88 7.82 -51.93 -0.41 0.47 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.65 7.99 -51.93 -0.41 0.24 16 41 H 0.07 0.68 8.03 -51.93 -0.42 0.27 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.56 6.87 -51.93 -0.36 0.20 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 0.58 7.57 -51.93 -0.39 0.18 16 48 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 51 H 0.07 0.94 8.00 -51.93 -0.42 0.53 16 52 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -30.00 390.64 -10.12 -40.12 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -9.75 Total: 2.79 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.77 Total: -18.55 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.44 Total: -36.54 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.00 -10.12 -40.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359763611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.310 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds