Wall clock time and date at job start Fri Apr 10 2020 22:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.45618 * 2 1 4 4 C 1.53042 * 109.45630 * 119.97158 * 2 1 3 5 5 C 1.53127 * 109.27596 * 179.19518 * 4 2 1 6 6 C 1.53123 * 109.15019 * 302.34079 * 5 4 2 7 7 C 1.53034 * 109.27992 * 57.67185 * 6 5 4 8 8 N 1.46843 * 109.46593 * 240.02235 * 2 1 3 9 9 C 1.46895 * 110.99970 * 54.14681 * 8 2 1 10 10 C 1.52999 * 109.47142 * 58.16472 * 9 8 2 11 11 C 1.52997 * 109.47685 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47685 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47142 * 179.97438 * 12 11 10 14 14 C 1.46904 * 110.99971 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47424 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.47003 * 305.00303 * 15 14 13 17 17 C 1.47197 * 109.47077 * 64.99892 * 15 14 13 18 18 N 9.29791 * 67.93091 * 313.45241 * 2 1 3 19 19 C 1.52994 * 109.47075 * 185.00153 * 15 14 13 20 20 C 1.50703 * 109.47017 * 174.99884 * 19 15 14 21 21 H 1.08002 * 120.00247 * 0.02562 * 20 19 15 22 22 C 1.37880 * 120.00130 * 180.02562 * 20 19 15 23 23 N 1.31518 * 120.00143 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99886 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47263 * 90.00593 * 24 22 20 26 26 H 1.48506 * 109.47113 * 210.00673 * 24 22 20 27 27 H 1.48499 * 109.47110 * 330.00278 * 24 22 20 28 28 H 1.09004 * 109.47248 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47406 * 299.97935 * 1 2 3 30 30 H 1.09007 * 109.46782 * 59.97667 * 1 2 3 31 31 H 1.08997 * 109.50758 * 299.13298 * 4 2 1 32 32 H 1.08998 * 109.50897 * 59.21853 * 4 2 1 33 33 H 1.09003 * 109.52393 * 62.24889 * 5 4 2 34 34 H 1.08998 * 109.52208 * 182.44010 * 5 4 2 35 35 H 1.08997 * 109.51083 * 297.71779 * 6 5 4 36 36 H 1.08998 * 109.48980 * 177.60711 * 6 5 4 37 37 H 1.09002 * 109.46271 * 180.79158 * 7 6 5 38 38 H 1.08994 * 109.46242 * 60.81457 * 7 6 5 39 39 H 1.09006 * 109.47384 * 178.16101 * 9 8 2 40 40 H 1.09000 * 109.47655 * 298.16384 * 9 8 2 41 41 H 1.09006 * 109.47200 * 300.00118 * 10 9 8 42 42 H 1.09006 * 109.47333 * 59.99601 * 10 9 8 43 43 H 1.09006 * 109.46888 * 300.00297 * 11 10 9 44 44 H 1.09006 * 109.47071 * 59.99429 * 11 10 9 45 45 H 1.09006 * 109.46677 * 300.00049 * 12 11 10 46 46 H 1.09003 * 109.46676 * 59.99920 * 12 11 10 47 47 H 1.00898 * 111.00424 * 303.95465 * 13 12 11 48 48 H 1.09002 * 109.47276 * 300.00502 * 14 13 12 49 49 H 1.08997 * 109.46794 * 59.99809 * 14 13 12 50 50 H 1.08998 * 109.47170 * 294.99605 * 19 15 14 51 51 H 1.09002 * 109.47213 * 55.00176 * 19 15 14 52 52 H 0.96992 * 120.00444 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0397 -0.7209 1.2501 5 6 3.5708 -0.7361 1.2358 6 6 4.0545 -1.4191 -0.0465 7 6 3.4865 -0.6778 -1.2589 8 7 2.0193 -0.6918 -1.1993 9 6 1.4374 -0.1107 -2.4165 10 6 1.7846 1.3777 -2.4874 11 6 1.1780 1.9832 -3.7547 12 6 1.5247 3.4717 -3.8253 13 7 0.9428 4.0528 -5.0425 14 6 1.2554 5.4846 -5.1437 15 6 0.6335 6.0535 -6.4207 16 1 0.9715 5.4730 -7.2791 17 6 -0.8336 5.9809 -6.3263 18 7 -1.9635 5.9261 -6.2552 19 6 1.0622 7.5122 -6.5906 20 6 0.5516 8.0356 -7.9084 21 1 -0.0217 7.3921 -8.5594 22 6 0.8164 9.3358 -8.2831 23 7 0.3704 9.7927 -9.4329 24 14 1.8073 10.4489 -7.1569 25 1 3.2508 10.3238 -7.4823 26 1 1.3768 11.8572 -7.3489 27 1 1.5820 10.0508 -5.7441 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5135 0.8901 30 1 -0.3633 0.5142 -0.8898 31 1 1.6893 -0.1982 2.1400 32 1 1.6652 -1.7445 1.2581 33 1 3.9456 0.2870 1.2674 34 1 3.9377 -1.2863 2.1022 35 1 3.7121 -2.4538 -0.0593 36 1 5.1436 -1.3952 -0.0828 37 1 3.8176 -1.1700 -2.1734 38 1 3.8404 0.3531 -1.2528 39 1 1.8415 -0.6201 -3.2914 40 1 0.3542 -0.2304 -2.3944 41 1 1.3805 1.8871 -1.6125 42 1 2.8678 1.4975 -2.5095 43 1 1.5817 1.4738 -4.6299 44 1 0.0948 1.8634 -3.7322 45 1 1.1206 3.9807 -2.9502 46 1 2.6079 3.5918 -3.8477 47 1 1.2524 3.5558 -5.8642 48 1 0.8489 6.0074 -4.2779 49 1 2.3366 5.6191 -5.1746 50 1 0.6489 8.1095 -5.7779 51 1 2.1502 7.5759 -6.5714 52 1 0.5563 10.7074 -9.6963 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568750627.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:34 Heat of formation + Delta-G solvation = -3.700014 kcal Electronic energy + Delta-G solvation = -24782.833257 eV Core-core repulsion = 21394.793600 eV Total energy + Delta-G solvation = -3388.039657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.232 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.00530 -37.66977 -36.12082 -34.85977 -33.68560 -32.89292 -32.42124 -31.17942 -28.22076 -27.38581 -26.23390 -24.29059 -22.92155 -22.40664 -21.77166 -21.40193 -21.26655 -19.38533 -17.20119 -16.86202 -16.30145 -16.14563 -15.66352 -15.10388 -14.96502 -14.73507 -14.59976 -14.27499 -13.99225 -13.78405 -13.50422 -13.25907 -12.88347 -12.80666 -12.48337 -12.39918 -12.27785 -12.23889 -12.14443 -11.97862 -11.75526 -11.64923 -11.46619 -11.33193 -11.27603 -11.12964 -11.06182 -10.78741 -10.76752 -10.67869 -10.46565 -10.42097 -9.94916 -9.75725 -9.33706 -8.63037 -8.54907 -8.38991 -6.11700 -4.12382 3.24364 3.33516 3.34463 3.53472 3.71298 3.79911 4.10769 4.37061 4.37896 4.43316 4.49800 4.58410 4.72448 4.79013 4.83081 4.96027 4.97244 5.06011 5.08043 5.12844 5.22926 5.23860 5.31082 5.32954 5.39188 5.43930 5.45738 5.52746 5.53920 5.56056 5.61135 5.64231 5.67314 5.72917 5.77492 5.80643 5.87379 5.90258 6.00980 6.05700 6.12073 6.22527 6.28635 6.78382 6.80949 6.90452 7.01148 7.11407 7.41515 7.62603 8.39592 8.54907 8.91966 9.48023 11.01383 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.001961 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.004166 B =14271.794175 C =14694.990579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 H 0.044 0.956 4 C -0.112 4.112 5 C -0.123 4.123 6 C -0.117 4.117 7 C 0.053 3.947 8 N -0.532 5.532 9 C 0.052 3.948 10 C -0.156 4.156 11 C -0.113 4.113 12 C 0.061 3.939 13 N -0.694 5.694 14 C 0.064 3.936 15 C 0.019 3.981 16 H 0.104 0.896 17 C 0.253 3.747 18 N -0.470 5.470 19 C -0.005 4.005 20 C -0.528 4.528 21 H 0.074 0.926 22 C 0.070 3.930 23 N -0.897 5.897 24 Si 0.878 3.122 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.264 1.264 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.027 0.973 47 H 0.342 0.658 48 H 0.076 0.924 49 H 0.048 0.952 50 H 0.025 0.975 51 H 0.032 0.968 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.546 -23.126 21.091 32.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 H 0.062 0.938 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.155 4.155 7 C -0.075 4.075 8 N -0.255 5.255 9 C -0.076 4.076 10 C -0.195 4.195 11 C -0.152 4.152 12 C -0.069 4.069 13 N -0.325 5.325 14 C -0.066 4.066 15 C -0.003 4.003 16 H 0.122 0.878 17 C -0.065 4.065 18 N -0.147 5.147 19 C -0.044 4.044 20 C -0.566 4.566 21 H 0.092 0.908 22 C -0.132 4.132 23 N -0.535 5.535 24 Si 0.705 3.295 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.189 1.189 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.160 0.840 48 H 0.094 0.906 49 H 0.066 0.934 50 H 0.043 0.957 51 H 0.050 0.950 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.061 -23.444 21.410 32.525 hybrid contribution 2.188 1.694 0.034 2.767 sum 9.249 -21.750 21.443 31.913 Atomic orbital electron populations 1.21934 0.94293 1.02549 1.02019 1.21624 0.95411 0.95694 0.90245 0.93827 1.21641 0.95367 1.01406 0.96592 1.21591 0.95945 1.00647 0.97845 1.21588 0.99628 1.00225 0.94069 1.22095 0.87632 0.98989 0.98807 1.62193 1.06960 1.54378 1.02014 1.22283 1.00799 0.92249 0.92279 1.22218 1.01030 0.97497 0.98788 1.21478 1.01779 0.94677 0.97226 1.21931 0.96423 0.94752 0.93757 1.60468 1.63627 1.03339 1.05067 1.22085 0.98427 0.87825 0.98238 1.18948 0.82339 1.01206 0.97796 0.87792 1.28579 0.94751 0.91185 0.91940 1.80885 1.13335 1.10674 1.09794 1.19635 0.97087 0.88861 0.98831 1.21032 1.35284 0.98080 1.02175 0.90762 1.25002 0.95390 0.97873 0.94922 1.69904 1.45656 1.16663 1.21238 0.86811 0.80599 0.80218 0.81891 1.20076 1.21284 1.18880 0.91850 0.92300 0.92051 0.91711 0.91159 0.92345 0.91880 0.91180 0.91699 0.90821 0.94656 0.90766 0.90086 0.91652 0.92077 0.91976 0.90982 0.91312 0.95468 0.84007 0.90590 0.93400 0.95661 0.94986 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.68 37.16 0.32 -0.72 16 2 C 0.08 0.57 1.84 -67.72 -0.12 0.44 16 3 H 0.04 0.35 6.61 -51.93 -0.34 0.01 16 4 C -0.11 -0.72 5.37 -26.64 -0.14 -0.87 16 5 C -0.12 -0.74 6.00 -26.60 -0.16 -0.90 16 6 C -0.12 -0.72 6.09 -26.65 -0.16 -0.88 16 7 C 0.05 0.37 5.05 -3.84 -0.02 0.35 16 8 N -0.53 -4.03 4.69 -226.70 -1.06 -5.10 16 9 C 0.05 0.38 4.79 -3.83 -0.02 0.36 16 10 C -0.16 -1.18 4.41 -26.73 -0.12 -1.30 16 11 C -0.11 -0.97 5.47 -26.73 -0.15 -1.12 16 12 C 0.06 0.62 5.69 -3.83 -0.02 0.59 16 13 N -0.69 -8.56 6.20 -113.78 -0.71 -9.27 16 14 C 0.06 0.89 5.05 -3.82 -0.02 0.87 16 15 C 0.02 0.34 2.35 -93.41 -0.22 0.12 16 16 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 17 C 0.25 5.27 13.66 -20.85 -0.28 4.99 16 18 N -0.47 -10.81 18.52 42.05 0.78 -10.03 16 19 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 20 C -0.53 -14.25 9.15 -34.44 -0.32 -14.57 16 21 H 0.07 2.20 7.84 -52.49 -0.41 1.79 16 22 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 23 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 24 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 6.07 -51.92 -0.32 0.14 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 38 H 0.04 0.26 6.75 -51.93 -0.35 -0.09 16 39 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 40 H 0.08 0.62 6.32 -51.93 -0.33 0.29 16 41 H 0.06 0.53 6.23 -51.93 -0.32 0.21 16 42 H 0.06 0.48 6.68 -51.93 -0.35 0.13 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.34 3.80 8.73 -39.29 -0.34 3.45 16 48 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 51 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 52 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 400.75 15.07 6.04 6.04 Total: -1.00 -31.00 400.75 -10.35 -41.34 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -9.88 Total: -1.71 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.62 Total: -10.95 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.22 Total: -50.72 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.00 -10.35 -41.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568750627.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.645 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds