Wall clock time and date at job start Fri Apr 10 2020 22:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46841 * 2 1 4 4 C 1.53001 * 109.46727 * 184.93380 * 3 2 1 5 5 N 1.46904 * 109.47027 * 185.69389 * 4 3 2 6 6 C 1.46844 * 110.99712 * 297.89581 * 5 4 3 7 7 C 1.53040 * 109.51818 * 174.16160 * 6 5 4 8 8 C 1.53115 * 109.28194 * 59.17904 * 7 6 5 9 9 C 1.53117 * 109.14952 * 302.33937 * 8 7 6 10 10 C 1.46852 * 110.99729 * 173.68413 * 5 4 3 11 11 H 1.09001 * 109.46041 * 65.83792 * 10 5 4 12 12 C 1.52992 * 109.46369 * 305.85419 * 10 5 4 13 13 N 1.46895 * 109.47355 * 305.73714 * 12 10 5 14 14 C 1.46899 * 111.00240 * 185.20966 * 13 12 10 15 15 C 1.53002 * 109.47634 * 184.76999 * 14 13 12 16 16 H 1.09002 * 109.46272 * 56.13856 * 15 14 13 17 17 C 1.47199 * 109.47165 * 296.13764 * 15 14 13 18 18 N 8.01720 * 120.10844 * 51.97124 * 2 1 3 19 19 C 1.52997 * 109.47068 * 176.13264 * 15 14 13 20 20 C 1.50704 * 109.46930 * 185.00319 * 19 15 14 21 21 H 1.08005 * 119.99834 * 0.02562 * 20 19 15 22 22 C 1.37880 * 120.00088 * 180.02562 * 20 19 15 23 23 N 1.31513 * 119.99857 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99979 * 179.72267 * 22 20 19 25 25 H 1.48500 * 109.47088 * 180.27000 * 24 22 20 26 26 H 1.48496 * 109.47350 * 300.27259 * 24 22 20 27 27 H 1.48502 * 109.47129 * 60.27080 * 24 22 20 28 28 H 1.09001 * 109.47377 * 299.99708 * 1 2 3 29 29 H 1.09001 * 109.47341 * 60.00086 * 1 2 3 30 30 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46933 * 240.00426 * 2 1 3 32 32 H 1.09001 * 109.47341 * 119.99914 * 2 1 3 33 33 H 1.08997 * 109.47127 * 64.93668 * 3 2 1 34 34 H 1.08996 * 109.46911 * 304.92890 * 3 2 1 35 35 H 1.08998 * 109.47057 * 65.69717 * 4 3 2 36 36 H 1.08999 * 109.47041 * 305.69552 * 4 3 2 37 37 H 1.08999 * 109.46644 * 294.17204 * 6 5 4 38 38 H 1.08997 * 109.46338 * 54.14691 * 6 5 4 39 39 H 1.09008 * 109.50273 * 179.12111 * 7 6 5 40 40 H 1.09003 * 109.50333 * 299.23201 * 7 6 5 41 41 H 1.09000 * 109.52270 * 62.24849 * 8 7 6 42 42 H 1.09002 * 109.52331 * 182.38000 * 8 7 6 43 43 H 1.08998 * 109.51787 * 297.71924 * 9 8 7 44 44 H 1.09004 * 109.48990 * 177.60557 * 9 8 7 45 45 H 1.09000 * 109.47312 * 185.73525 * 12 10 5 46 46 H 1.08998 * 109.47209 * 65.73734 * 12 10 5 47 47 H 1.00897 * 111.00198 * 61.25518 * 13 12 10 48 48 H 1.09005 * 109.47305 * 64.77035 * 14 13 12 49 49 H 1.09001 * 109.47489 * 304.77417 * 14 13 12 50 50 H 1.09001 * 109.47235 * 65.00736 * 19 15 14 51 51 H 1.08993 * 109.47584 * 305.00298 * 19 15 14 52 52 H 0.97003 * 120.00380 * 359.72533 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5649 1.4443 -0.1241 5 7 4.0658 2.8186 0.0126 6 6 3.5467 3.6769 -1.0599 7 6 3.9688 5.1256 -0.8048 8 6 5.4970 5.2059 -0.7557 9 6 6.0146 4.2665 0.3370 10 6 5.5336 2.8425 0.0487 11 1 5.9259 2.5146 -0.9140 12 6 6.0320 1.9035 1.1489 13 7 5.3951 2.2611 2.4235 14 6 5.9415 1.4611 3.5277 15 6 5.1742 1.7753 4.8136 16 1 4.1105 1.5980 4.6544 17 6 5.3873 3.1849 5.1802 18 7 5.5518 4.2727 5.4631 19 6 5.6784 0.8730 5.9417 20 6 4.8410 1.0952 7.1749 21 1 4.0301 1.8083 7.1557 22 6 5.1102 0.3881 8.3275 23 7 6.0973 -0.4806 8.3507 24 14 4.0772 0.6691 9.8583 25 1 4.5702 -0.2024 10.9550 26 1 4.1814 2.0916 10.2716 27 1 2.6587 0.3414 9.5653 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.7506 1.9302 0.9309 34 1 1.6063 1.9812 -0.8425 35 1 3.8506 1.0488 -1.0988 36 1 3.9940 0.8214 0.6608 37 1 3.9484 3.3449 -2.0172 38 1 2.4588 3.6138 -1.0811 39 1 3.5966 5.7601 -1.6092 40 1 3.5559 5.4629 0.1460 41 1 5.9086 4.9058 -1.7194 42 1 5.8011 6.2286 -0.5322 43 1 5.6339 4.5900 1.3057 44 1 7.1043 4.2872 0.3482 45 1 7.1137 1.9974 1.2444 46 1 5.7779 0.8753 0.8917 47 1 4.3926 2.1623 2.3670 48 1 6.9954 1.7034 3.6652 49 1 5.8399 0.4014 3.2937 50 1 6.7188 1.1126 6.1611 51 1 5.6027 -0.1699 5.6342 52 1 6.6335 -0.6268 7.5557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572834388.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:03 Heat of formation + Delta-G solvation = -8.421132 kcal Electronic energy + Delta-G solvation = -26150.474188 eV Core-core repulsion = 22762.229808 eV Total energy + Delta-G solvation = -3388.244380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.232 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.81216 -37.22472 -35.80360 -35.15519 -33.83282 -33.08995 -32.13822 -30.33274 -28.76039 -26.73113 -25.09196 -24.47745 -22.64703 -22.50439 -22.02342 -21.14633 -20.89192 -19.53910 -17.31870 -16.67537 -16.10156 -15.98577 -15.43897 -15.08414 -14.84785 -14.37046 -14.13223 -13.86280 -13.76790 -13.67510 -13.49666 -13.30649 -13.19152 -12.86512 -12.38692 -12.32079 -12.16058 -12.02806 -11.75806 -11.67353 -11.55483 -11.32674 -11.29330 -11.21808 -11.10256 -10.98083 -10.83653 -10.71856 -10.61906 -10.33747 -10.28478 -10.27116 -10.13151 -9.83730 -8.64408 -8.41846 -8.38938 -8.17223 -6.41137 -4.11915 3.44209 3.47445 3.63209 3.64800 3.74525 3.83466 4.32953 4.53335 4.56937 4.64582 4.70368 4.76316 4.83893 4.88139 4.94654 5.07615 5.13732 5.18467 5.22530 5.33354 5.37535 5.38853 5.42042 5.47642 5.53848 5.54125 5.61483 5.64353 5.67333 5.72702 5.75493 5.79472 5.84011 5.89747 5.95168 5.98284 6.06795 6.10314 6.13265 6.16810 6.33798 6.38869 6.48168 6.95330 6.98429 7.12004 7.20595 7.27682 7.64727 8.06395 8.38004 8.59839 8.81597 9.59125 10.99668 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.003415 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.102801 B = 8197.055130 C = 9509.537423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.117 4.117 4 C 0.049 3.951 5 N -0.527 5.527 6 C 0.057 3.943 7 C -0.116 4.116 8 C -0.122 4.122 9 C -0.105 4.105 10 C 0.092 3.908 11 H 0.037 0.963 12 C 0.064 3.936 13 N -0.679 5.679 14 C 0.064 3.936 15 C 0.017 3.983 16 H 0.098 0.902 17 C 0.256 3.744 18 N -0.475 5.475 19 C 0.019 3.981 20 C -0.605 4.605 21 H 0.051 0.949 22 C 0.020 3.980 23 N -0.909 5.909 24 Si 1.065 2.935 25 H -0.282 1.282 26 H -0.288 1.288 27 H -0.286 1.286 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.351 0.649 48 H 0.074 0.926 49 H 0.043 0.957 50 H 0.016 0.984 51 H 0.027 0.973 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.648 2.613 -23.724 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.078 4.078 5 N -0.252 5.252 6 C -0.071 4.071 7 C -0.154 4.154 8 C -0.160 4.160 9 C -0.143 4.143 10 C -0.016 4.016 11 H 0.055 0.945 12 C -0.066 4.066 13 N -0.312 5.312 14 C -0.066 4.066 15 C -0.005 4.005 16 H 0.116 0.884 17 C -0.061 4.061 18 N -0.152 5.152 19 C -0.020 4.020 20 C -0.643 4.643 21 H 0.069 0.931 22 C -0.184 4.184 23 N -0.545 5.545 24 Si 0.893 3.107 25 H -0.207 1.207 26 H -0.214 1.214 27 H -0.213 1.213 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.046 0.954 47 H 0.171 0.829 48 H 0.092 0.908 49 H 0.061 0.939 50 H 0.035 0.965 51 H 0.045 0.955 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.337 4.508 -21.166 22.289 hybrid contribution 0.037 -1.175 -2.702 2.947 sum -5.300 3.333 -23.869 24.676 Atomic orbital electron populations 1.21753 0.95762 1.01564 1.01803 1.21496 0.96006 0.96732 1.01999 1.21656 0.94323 0.96699 1.02832 1.22231 0.95761 0.89831 1.00015 1.61898 1.08276 1.09023 1.45989 1.22093 1.00010 0.93323 0.91665 1.21576 0.96071 0.95502 1.02277 1.21600 0.95718 0.99867 0.98767 1.21528 0.99571 0.92948 1.00252 1.21654 0.87026 0.96703 0.96219 0.94505 1.22001 0.99361 0.95549 0.89692 1.60379 1.10625 1.57925 1.02292 1.22087 0.99671 0.95264 0.89551 1.19020 1.01528 0.84302 0.95618 0.88383 1.28727 0.92216 0.94192 0.91003 1.80973 1.09780 1.13477 1.10978 1.19269 0.97013 0.93650 0.92074 1.21977 1.18091 1.26737 0.97497 0.93104 1.25781 0.97652 0.93352 1.01602 1.70805 1.18142 1.33154 1.32431 0.83586 0.75302 0.76189 0.75587 1.20715 1.21425 1.21278 0.92463 0.93046 0.92831 0.92454 0.91663 0.90667 0.92243 0.95389 0.90450 0.95533 0.90587 0.92072 0.90843 0.92927 0.91997 0.89382 0.92093 0.90726 0.95388 0.82944 0.90785 0.93853 0.96533 0.95522 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -0.99 4.88 -26.73 -0.13 -1.12 16 4 C 0.05 0.45 4.28 -3.82 -0.02 0.43 16 5 N -0.53 -5.21 3.79 -226.69 -0.86 -6.07 16 6 C 0.06 0.51 5.25 -3.83 -0.02 0.49 16 7 C -0.12 -1.05 6.09 -26.65 -0.16 -1.21 16 8 C -0.12 -1.13 6.00 -26.61 -0.16 -1.29 16 9 C -0.11 -1.14 5.27 -26.65 -0.14 -1.28 16 10 C 0.09 0.94 2.21 -67.72 -0.15 0.79 16 11 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 12 C 0.06 0.70 4.67 -3.83 -0.02 0.68 16 13 N -0.68 -8.91 5.62 -113.79 -0.64 -9.55 16 14 C 0.06 0.95 5.07 -3.82 -0.02 0.93 16 15 C 0.02 0.32 2.32 -93.41 -0.22 0.11 16 16 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 17 C 0.26 5.46 13.64 -20.76 -0.28 5.18 16 18 N -0.48 -11.02 18.54 42.15 0.78 -10.24 16 19 C 0.02 0.43 3.74 -27.88 -0.10 0.33 16 20 C -0.60 -16.42 8.60 -34.44 -0.30 -16.72 16 21 H 0.05 1.39 7.59 -52.48 -0.40 0.99 16 22 C 0.02 0.58 5.46 -17.82 -0.10 0.48 16 23 N -0.91 -26.91 13.65 55.43 0.76 -26.16 16 24 Si 1.07 25.17 29.90 -169.99 -5.08 20.08 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.48 6.62 -51.93 -0.34 0.13 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.75 5.54 -51.93 -0.29 0.46 16 37 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.08 0.64 6.20 -51.93 -0.32 0.32 16 39 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.19 7.76 -51.93 -0.40 0.79 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 46 H 0.03 0.29 6.54 -51.93 -0.34 -0.05 16 47 H 0.35 4.59 7.19 -39.29 -0.28 4.31 16 48 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.04 0.59 8.13 -51.93 -0.42 0.17 16 50 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 51 H 0.03 0.62 8.00 -51.93 -0.42 0.20 16 52 H 0.27 7.79 7.22 -40.82 -0.29 7.50 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -30.03 403.35 -10.48 -40.51 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -9.91 Total: -0.52 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -1.60 Total: -14.14 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.04 Total: -52.01 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.03 -10.48 -40.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572834388.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.085 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds