Wall clock time and date at job start Fri Apr 10 2020 22:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46841 * 2 1 4 4 C 1.53001 * 109.46727 * 184.93380 * 3 2 1 5 5 N 1.46904 * 109.47027 * 185.69389 * 4 3 2 6 6 C 1.46844 * 110.99712 * 297.89581 * 5 4 3 7 7 C 1.53040 * 109.51818 * 174.16160 * 6 5 4 8 8 C 1.53115 * 109.28194 * 59.17904 * 7 6 5 9 9 C 1.53117 * 109.14952 * 302.33937 * 8 7 6 10 10 C 1.46852 * 110.99729 * 173.68413 * 5 4 3 11 11 H 1.09001 * 109.46041 * 65.83792 * 10 5 4 12 12 C 1.52992 * 109.46369 * 305.85419 * 10 5 4 13 13 N 1.46895 * 109.47355 * 305.73714 * 12 10 5 14 14 C 1.46899 * 111.00240 * 185.20966 * 13 12 10 15 15 C 1.53002 * 109.47634 * 184.76999 * 14 13 12 16 16 H 1.09002 * 109.46272 * 56.13856 * 15 14 13 17 17 C 1.47199 * 109.47165 * 296.13764 * 15 14 13 18 18 N 8.01720 * 120.10844 * 51.97124 * 2 1 3 19 19 C 1.52997 * 109.47068 * 176.13264 * 15 14 13 20 20 C 1.50704 * 109.46930 * 185.00319 * 19 15 14 21 21 H 1.08005 * 119.99834 * 0.02562 * 20 19 15 22 22 C 1.37880 * 120.00088 * 180.02562 * 20 19 15 23 23 N 1.31513 * 119.99857 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99979 * 179.72267 * 22 20 19 25 25 H 1.48500 * 109.47088 * 180.27000 * 24 22 20 26 26 H 1.48496 * 109.47350 * 300.27259 * 24 22 20 27 27 H 1.48502 * 109.47129 * 60.27080 * 24 22 20 28 28 H 1.09001 * 109.47377 * 299.99708 * 1 2 3 29 29 H 1.09001 * 109.47341 * 60.00086 * 1 2 3 30 30 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46933 * 240.00426 * 2 1 3 32 32 H 1.09001 * 109.47341 * 119.99914 * 2 1 3 33 33 H 1.08997 * 109.47127 * 64.93668 * 3 2 1 34 34 H 1.08996 * 109.46911 * 304.92890 * 3 2 1 35 35 H 1.08998 * 109.47057 * 65.69717 * 4 3 2 36 36 H 1.08999 * 109.47041 * 305.69552 * 4 3 2 37 37 H 1.08999 * 109.46644 * 294.17204 * 6 5 4 38 38 H 1.08997 * 109.46338 * 54.14691 * 6 5 4 39 39 H 1.09008 * 109.50273 * 179.12111 * 7 6 5 40 40 H 1.09003 * 109.50333 * 299.23201 * 7 6 5 41 41 H 1.09000 * 109.52270 * 62.24849 * 8 7 6 42 42 H 1.09002 * 109.52331 * 182.38000 * 8 7 6 43 43 H 1.08998 * 109.51787 * 297.71924 * 9 8 7 44 44 H 1.09004 * 109.48990 * 177.60557 * 9 8 7 45 45 H 1.09000 * 109.47312 * 185.73525 * 12 10 5 46 46 H 1.08998 * 109.47209 * 65.73734 * 12 10 5 47 47 H 1.00897 * 111.00198 * 61.25518 * 13 12 10 48 48 H 1.09005 * 109.47305 * 64.77035 * 14 13 12 49 49 H 1.09001 * 109.47489 * 304.77417 * 14 13 12 50 50 H 1.09001 * 109.47235 * 65.00736 * 19 15 14 51 51 H 1.08993 * 109.47584 * 305.00298 * 19 15 14 52 52 H 0.97003 * 120.00380 * 359.72533 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5649 1.4443 -0.1241 5 7 4.0658 2.8186 0.0126 6 6 3.5467 3.6769 -1.0599 7 6 3.9688 5.1256 -0.8048 8 6 5.4970 5.2059 -0.7557 9 6 6.0146 4.2665 0.3370 10 6 5.5336 2.8425 0.0487 11 1 5.9259 2.5146 -0.9140 12 6 6.0320 1.9035 1.1489 13 7 5.3951 2.2611 2.4235 14 6 5.9415 1.4611 3.5277 15 6 5.1742 1.7753 4.8136 16 1 4.1105 1.5980 4.6544 17 6 5.3873 3.1849 5.1802 18 7 5.5518 4.2727 5.4631 19 6 5.6784 0.8730 5.9417 20 6 4.8410 1.0952 7.1749 21 1 4.0301 1.8083 7.1557 22 6 5.1102 0.3881 8.3275 23 7 6.0973 -0.4806 8.3507 24 14 4.0772 0.6691 9.8583 25 1 4.5702 -0.2024 10.9550 26 1 4.1814 2.0916 10.2716 27 1 2.6587 0.3414 9.5653 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.7506 1.9302 0.9309 34 1 1.6063 1.9812 -0.8425 35 1 3.8506 1.0488 -1.0988 36 1 3.9940 0.8214 0.6608 37 1 3.9484 3.3449 -2.0172 38 1 2.4588 3.6138 -1.0811 39 1 3.5966 5.7601 -1.6092 40 1 3.5559 5.4629 0.1460 41 1 5.9086 4.9058 -1.7194 42 1 5.8011 6.2286 -0.5322 43 1 5.6339 4.5900 1.3057 44 1 7.1043 4.2872 0.3482 45 1 7.1137 1.9974 1.2444 46 1 5.7779 0.8753 0.8917 47 1 4.3926 2.1623 2.3670 48 1 6.9954 1.7034 3.6652 49 1 5.8399 0.4014 3.2937 50 1 6.7188 1.1126 6.1611 51 1 5.6027 -0.1699 5.6342 52 1 6.6335 -0.6268 7.5557 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572834388.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:02 Heat of formation + Delta-G solvation = -24.708953 kcal Electronic energy + Delta-G solvation = -26151.180481 eV Core-core repulsion = 22762.229808 eV Total energy + Delta-G solvation = -3388.950673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.232 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.60999 -38.71596 -36.58463 -36.41666 -35.69477 -33.96842 -33.47915 -31.56093 -29.44567 -28.17506 -26.31258 -25.35727 -24.18220 -23.63375 -23.28122 -21.95687 -21.57432 -20.34415 -19.12274 -18.40309 -16.91670 -16.85418 -16.24922 -16.12134 -15.87535 -15.66450 -15.39032 -15.18512 -15.01633 -14.79785 -14.42162 -14.31962 -14.06635 -13.92468 -13.82212 -13.67948 -13.44778 -13.22396 -13.04413 -12.97952 -12.62166 -12.58651 -12.40025 -12.23277 -12.13608 -12.00819 -11.95868 -11.86249 -11.76622 -11.64809 -11.57630 -11.39762 -11.06679 -11.01276 -10.65379 -10.51826 -9.22154 -9.13522 -8.62859 -6.33644 1.54338 1.60833 1.79856 2.02439 2.09406 2.57179 2.88033 3.17774 3.24442 3.35668 3.82637 3.87369 3.96888 4.04646 4.13328 4.14407 4.27129 4.30801 4.33491 4.40833 4.46109 4.47072 4.60440 4.64240 4.67543 4.70419 4.72997 4.78887 4.84016 4.87695 4.90695 4.92813 5.00491 5.03554 5.09632 5.10124 5.17826 5.21382 5.30635 5.32882 5.36498 5.40490 5.43914 5.51301 5.60959 5.93623 6.08265 6.22006 6.25650 6.30489 6.60400 6.63778 6.86733 7.43973 8.79296 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.012315 B = 0.003415 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.102801 B = 8197.055130 C = 9509.537423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.053 3.947 5 N -0.538 5.538 6 C 0.058 3.942 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.103 4.103 10 C 0.097 3.903 11 H 0.047 0.953 12 C 0.066 3.934 13 N -0.685 5.685 14 C 0.078 3.922 15 C 0.027 3.973 16 H 0.113 0.887 17 C 0.265 3.735 18 N -0.510 5.510 19 C 0.023 3.977 20 C -0.615 4.615 21 H 0.045 0.955 22 C -0.029 4.029 23 N -0.936 5.936 24 Si 1.105 2.895 25 H -0.282 1.282 26 H -0.284 1.284 27 H -0.264 1.264 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.352 0.648 48 H 0.068 0.932 49 H 0.062 0.938 50 H -0.004 1.004 51 H 0.031 0.969 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.574 2.306 -25.415 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.148 4.148 4 C -0.074 4.074 5 N -0.264 5.264 6 C -0.069 4.069 7 C -0.152 4.152 8 C -0.157 4.157 9 C -0.141 4.141 10 C -0.011 4.011 11 H 0.065 0.935 12 C -0.064 4.064 13 N -0.318 5.318 14 C -0.052 4.052 15 C 0.006 3.994 16 H 0.131 0.869 17 C -0.052 4.052 18 N -0.187 5.187 19 C -0.016 4.016 20 C -0.653 4.653 21 H 0.063 0.937 22 C -0.228 4.228 23 N -0.573 5.573 24 Si 0.927 3.073 25 H -0.208 1.208 26 H -0.210 1.210 27 H -0.189 1.189 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.058 0.942 47 H 0.172 0.828 48 H 0.086 0.914 49 H 0.080 0.920 50 H 0.014 0.986 51 H 0.049 0.951 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.271 4.205 -22.886 24.099 hybrid contribution 0.333 -1.053 -2.216 2.476 sum -5.937 3.152 -25.102 25.987 Atomic orbital electron populations 1.21754 0.95508 1.01828 1.01802 1.21473 0.96219 0.96341 1.01972 1.21582 0.94027 0.96936 1.02294 1.22196 0.95926 0.89253 1.00038 1.61887 1.08048 1.09678 1.46749 1.22105 1.00327 0.92910 0.91582 1.21557 0.95765 0.96001 1.01883 1.21577 0.95950 0.99456 0.98675 1.21461 0.99516 0.93858 0.99225 1.21578 0.87389 0.95919 0.96224 0.93497 1.22037 0.99197 0.96428 0.88709 1.60326 1.10799 1.57823 1.02878 1.21880 0.98606 0.96474 0.88272 1.19007 1.02799 0.81741 0.95894 0.86887 1.29254 0.91180 0.94648 0.90073 1.80969 1.11042 1.14697 1.12020 1.19135 0.95297 0.94762 0.92425 1.22377 1.18051 1.25906 0.98952 0.93670 1.27047 0.98075 0.92997 1.04683 1.70910 1.19358 1.34746 1.32305 0.83072 0.75260 0.76196 0.72730 1.20779 1.20978 1.18864 0.93136 0.92386 0.92459 0.91731 0.92406 0.92097 0.91644 0.94816 0.91033 0.94844 0.90068 0.90466 0.92715 0.91730 0.92093 0.92442 0.92080 0.90717 0.94163 0.82818 0.91361 0.92026 0.98564 0.95097 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -1.75 5.93 30.60 0.18 -1.57 16 3 C -0.11 -1.69 4.88 30.60 0.15 -1.54 16 4 C 0.05 0.86 4.28 86.30 0.37 1.23 16 5 N -0.54 -9.77 3.79 -871.11 -3.30 -13.07 16 6 C 0.06 0.93 5.25 86.33 0.45 1.38 16 7 C -0.11 -1.90 6.09 30.65 0.19 -1.71 16 8 C -0.12 -2.05 6.00 30.67 0.18 -1.87 16 9 C -0.10 -2.14 5.27 30.65 0.16 -1.97 16 10 C 0.10 1.82 2.21 44.93 0.10 1.92 16 11 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 12 C 0.07 1.32 4.67 86.30 0.40 1.73 16 13 N -0.68 -17.14 5.62 -513.91 -2.89 -20.03 16 14 C 0.08 2.21 5.07 86.30 0.44 2.65 16 15 C 0.03 1.00 2.32 -12.60 -0.03 0.97 16 16 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 17 C 0.26 11.26 13.64 89.44 1.22 12.48 16 18 N -0.51 -23.72 18.54 20.00 0.37 -23.35 16 19 C 0.02 1.04 3.74 29.85 0.11 1.16 16 20 C -0.61 -33.24 8.60 25.60 0.22 -33.02 16 21 H 0.04 2.45 7.59 -2.91 -0.02 2.43 16 22 C -0.03 -1.64 5.46 84.66 0.46 -1.18 16 23 N -0.94 -55.68 13.65 21.45 0.29 -55.39 16 24 Si 1.10 50.16 29.90 68.60 2.05 52.21 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 0.92 6.62 -2.39 -0.02 0.91 16 35 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 1.24 5.54 -2.39 -0.01 1.23 16 37 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.08 1.21 6.20 -2.39 -0.01 1.20 16 39 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.56 7.76 -2.39 -0.02 1.54 16 44 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 46 H 0.04 0.73 6.54 -2.39 -0.02 0.72 16 47 H 0.35 8.75 7.19 -89.70 -0.64 8.10 16 48 H 0.07 2.03 8.14 -2.38 -0.02 2.02 16 49 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 50 H 0.00 -0.20 8.01 -2.39 -0.02 -0.22 16 51 H 0.03 1.41 8.00 -2.39 -0.02 1.39 16 52 H 0.26 15.36 7.22 -92.71 -0.67 14.69 16 Total: -1.00 -63.82 403.35 2.17 -61.64 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.32 Total: 18.71 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 5.32 Total: -20.73 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -5.52 Total: -111.83 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.21 kcal Total: -63.82 2.17 -61.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572834388.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.934 kcal (2) G-P(sol) polarization free energy of solvation -63.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds