Wall clock time and date at job start Fri Apr 10 2020 22:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.47103 * 2 1 4 4 C 1.52997 * 109.46807 * 120.00274 * 2 1 3 5 5 C 1.52999 * 109.47196 * 60.00063 * 4 2 1 6 6 C 1.52994 * 109.47400 * 59.99689 * 5 4 2 7 7 C 1.53009 * 109.47229 * 300.00050 * 6 5 4 8 8 C 1.52995 * 109.46727 * 59.99942 * 7 6 5 9 9 H 1.08998 * 109.47872 * 60.00141 * 8 7 6 10 10 C 1.53004 * 109.47016 * 180.02562 * 8 7 6 11 11 C 1.50698 * 109.46935 * 294.99974 * 10 8 7 12 12 O 1.21275 * 120.00413 * 0.02562 * 11 10 8 13 13 N 1.34781 * 120.00056 * 179.97438 * 11 10 8 14 14 C 1.46920 * 120.63464 * 180.02562 * 13 11 10 15 15 C 1.53194 * 108.77614 * 233.58678 * 14 13 11 16 16 C 1.53034 * 109.31102 * 305.36545 * 15 14 13 17 17 C 1.52998 * 109.45819 * 181.38610 * 16 15 14 18 18 C 1.50706 * 109.47348 * 174.96969 * 17 16 15 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47057 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47389 * 300.00068 * 22 20 18 25 25 H 1.48504 * 109.47102 * 60.00417 * 22 20 18 26 26 C 1.53035 * 109.53113 * 61.36933 * 16 15 14 27 27 C 1.46932 * 120.62702 * 359.97438 * 13 11 10 28 28 H 1.08995 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46733 * 299.99786 * 1 2 3 30 30 H 1.09005 * 109.47043 * 59.99564 * 1 2 3 31 31 H 1.09003 * 109.46679 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.47301 * 299.99781 * 4 2 1 33 33 H 1.09005 * 109.47210 * 179.97438 * 5 4 2 34 34 H 1.09003 * 109.46915 * 299.99376 * 5 4 2 35 35 H 1.09003 * 109.47343 * 59.99948 * 6 5 4 36 36 H 1.09000 * 109.47540 * 179.97438 * 6 5 4 37 37 H 1.08996 * 109.46587 * 299.99924 * 7 6 5 38 38 H 1.08999 * 109.47330 * 179.97438 * 7 6 5 39 39 H 1.08999 * 109.47247 * 174.99988 * 10 8 7 40 40 H 1.09007 * 109.46757 * 55.00232 * 10 8 7 41 41 H 1.09001 * 109.58830 * 113.79720 * 14 13 11 42 42 H 1.09001 * 109.69764 * 353.44306 * 14 13 11 43 43 H 1.08994 * 109.49480 * 185.40745 * 15 14 13 44 44 H 1.09000 * 109.49242 * 65.31564 * 15 14 13 45 45 H 1.08998 * 109.45949 * 301.35465 * 16 15 14 46 46 H 1.09001 * 109.47671 * 54.97178 * 17 16 15 47 47 H 1.09006 * 109.47297 * 294.96897 * 17 16 15 48 48 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 49 49 H 1.09003 * 109.49503 * 58.57865 * 26 16 15 50 50 H 1.08998 * 109.49997 * 178.67494 * 26 16 15 51 51 H 1.08998 * 109.58232 * 246.20003 * 27 13 11 52 52 H 1.09001 * 109.58971 * 6.48170 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2491 6 6 2.0399 -2.8850 -0.0001 7 6 1.5299 -2.1637 -1.2494 8 6 2.0400 -0.7213 -1.2493 9 1 3.1300 -0.7212 -1.2493 10 6 1.5295 0.0003 -2.4982 11 6 2.1299 -0.6348 -3.7259 12 8 2.8907 -1.5725 -3.6131 13 7 1.8205 -0.1614 -4.9493 14 6 2.3973 -0.7704 -6.1555 15 6 3.0626 0.3271 -6.9920 16 6 2.0460 1.4360 -7.2725 17 6 2.6971 2.5176 -8.1369 18 6 1.6639 3.5471 -8.5161 19 1 0.6447 3.4404 -8.1750 20 6 2.0197 4.6252 -9.2985 21 7 3.2607 4.7549 -9.7143 22 14 0.7389 5.9009 -9.7690 23 1 1.3710 6.9514 -10.6069 24 1 -0.3531 5.2472 -10.5342 25 1 0.1806 6.5187 -8.5394 26 6 1.5819 2.0510 -5.9502 27 6 0.8991 0.9728 -5.1021 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 3.1300 -0.7217 1.2490 32 1 1.6767 -0.2075 2.1392 33 1 1.8936 -2.6778 2.1389 34 1 0.4399 -2.1637 1.2492 35 1 3.1299 -2.8851 -0.0001 36 1 1.6769 -3.9128 0.0001 37 1 0.4399 -2.1637 -1.2493 38 1 1.8936 -2.6772 -2.1394 39 1 1.8179 1.0505 -2.4545 40 1 0.4431 -0.0766 -2.5436 41 1 1.6082 -1.2460 -6.7379 42 1 3.1411 -1.5149 -5.8715 43 1 3.4105 -0.0947 -7.9350 44 1 3.9092 0.7398 -6.4433 45 1 1.1884 1.0177 -7.7992 46 1 3.1061 2.0639 -9.0397 47 1 3.4991 2.9973 -7.5759 48 1 3.9256 4.0922 -9.4702 49 1 2.4426 2.4474 -5.4114 50 1 0.8757 2.8565 -6.1516 51 1 -0.0120 0.6390 -5.5988 52 1 0.6527 1.3782 -4.1207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578535974.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:21 Heat of formation + Delta-G solvation = -105.026919 kcal Electronic energy + Delta-G solvation = -26496.582865 eV Core-core repulsion = 23071.856593 eV Total energy + Delta-G solvation = -3424.726273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.225 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53662 -40.04237 -38.61315 -35.95668 -34.22302 -33.66258 -32.61511 -32.00523 -29.75297 -28.66405 -27.11142 -25.90838 -24.23621 -23.83278 -23.15325 -22.44361 -21.26866 -19.80137 -19.30992 -18.82920 -18.09226 -16.92586 -16.61007 -16.54457 -15.71424 -15.54674 -15.43143 -15.39439 -15.15333 -14.86867 -14.74216 -14.41432 -14.27268 -13.80314 -13.75275 -13.45432 -13.30900 -13.12708 -13.11433 -12.95617 -12.65349 -12.43207 -12.40276 -12.20908 -12.17182 -11.95711 -11.90422 -11.62122 -11.60712 -11.50844 -11.33551 -11.10052 -10.98500 -10.78560 -10.54951 -10.50216 -10.47315 -9.60892 -8.63838 -6.33821 1.54320 1.62753 1.64625 1.80905 2.03976 2.59833 3.20262 3.50720 3.69882 3.80862 3.84876 3.91688 3.95767 4.07109 4.14586 4.23689 4.32301 4.33500 4.38288 4.47266 4.50399 4.52459 4.57485 4.62920 4.69681 4.75775 4.78351 4.79238 4.82681 4.86720 4.92936 5.00565 5.05697 5.11220 5.12825 5.18274 5.22295 5.23196 5.29574 5.30587 5.33971 5.36400 5.44299 5.50347 5.57465 5.61958 5.66259 5.72354 6.05360 6.23428 6.46044 6.61694 7.19825 7.48672 8.76387 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.024774 B = 0.002742 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.965544 B =10210.204769 C =10904.246306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.061 4.061 9 H 0.050 0.950 10 C -0.133 4.133 11 C 0.508 3.492 12 O -0.580 6.580 13 N -0.612 5.612 14 C 0.119 3.881 15 C -0.122 4.122 16 C -0.067 4.067 17 C 0.016 3.984 18 C -0.601 4.601 19 H 0.060 0.940 20 C -0.045 4.045 21 N -0.945 5.945 22 Si 1.116 2.884 23 H -0.290 1.290 24 H -0.268 1.268 25 H -0.265 1.265 26 C -0.114 4.114 27 C 0.113 3.887 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.061 0.939 46 H -0.020 1.020 47 H -0.020 1.020 48 H 0.252 0.748 49 H 0.044 0.956 50 H 0.075 0.925 51 H 0.083 0.917 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.977 -11.843 22.067 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.080 4.080 9 H 0.069 0.931 10 C -0.172 4.172 11 C 0.299 3.701 12 O -0.461 6.461 13 N -0.344 5.344 14 C -0.004 4.004 15 C -0.160 4.160 16 C -0.085 4.085 17 C -0.021 4.021 18 C -0.639 4.639 19 H 0.079 0.921 20 C -0.242 4.242 21 N -0.583 5.583 22 Si 0.937 3.063 23 H -0.216 1.216 24 H -0.193 1.193 25 H -0.189 1.189 26 C -0.152 4.152 27 C -0.009 4.009 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.135 0.865 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.080 0.920 46 H -0.002 1.002 47 H -0.002 1.002 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.094 0.906 51 H 0.102 0.898 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.815 -10.944 21.300 25.518 hybrid contribution 1.205 -1.340 0.079 1.804 sum -7.610 -12.284 21.379 25.804 Atomic orbital electron populations 1.21999 0.94236 1.02360 1.02310 1.21118 0.96826 0.98880 0.93460 0.90928 1.21553 1.00126 0.95834 0.97614 1.21561 1.01295 0.95458 0.97125 1.21487 1.00011 0.98977 0.94958 1.21657 1.00503 0.95184 0.98066 1.20852 0.99331 0.95002 0.92795 0.93107 1.21901 1.03131 1.01309 0.90852 1.21353 0.80602 0.82960 0.85197 1.90618 1.38176 1.30555 1.86716 1.48318 1.46576 1.33706 1.05821 1.21474 0.98365 0.95001 0.85517 1.21914 0.98158 0.96415 0.99550 1.20920 0.97278 0.94398 0.95945 1.19202 0.95314 0.94257 0.93321 1.22444 0.97236 1.09702 1.34534 0.92134 1.27429 1.00806 1.01803 0.94139 1.70925 1.03436 1.37840 1.46123 0.82961 0.72642 0.73549 0.77166 1.21617 1.19336 1.18950 1.21787 1.00447 0.98035 0.94904 1.21958 0.91688 0.85172 1.02100 0.92014 0.92019 0.91964 0.92953 0.90841 0.91745 0.90967 0.93511 0.92048 0.91301 0.93026 0.87658 0.86480 0.90379 0.90272 0.91364 0.93730 0.92024 1.00213 1.00218 0.93851 0.93726 0.90606 0.89844 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.15 71.98 0.59 -1.16 16 2 C -0.08 -1.20 2.72 -10.79 -0.03 -1.23 16 3 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.56 5.45 30.59 0.17 -1.39 16 5 C -0.12 -1.59 5.65 30.59 0.17 -1.42 16 6 C -0.12 -2.05 5.92 30.60 0.18 -1.86 16 7 C -0.12 -2.31 4.67 30.60 0.14 -2.17 16 8 C -0.06 -1.16 1.61 -10.79 -0.02 -1.18 16 9 H 0.05 1.23 7.96 -2.39 -0.02 1.21 16 10 C -0.13 -2.47 3.02 29.85 0.09 -2.38 16 11 C 0.51 13.70 7.42 87.66 0.65 14.35 16 12 O -0.58 -19.61 13.38 -3.01 -0.04 -19.65 16 13 N -0.61 -16.43 2.97 -818.82 -2.43 -18.86 16 14 C 0.12 3.47 6.43 86.36 0.56 4.02 16 15 C -0.12 -4.17 5.36 30.67 0.16 -4.01 16 16 C -0.07 -2.57 2.10 -10.77 -0.02 -2.60 16 17 C 0.02 0.82 3.76 29.85 0.11 0.93 16 18 C -0.60 -32.92 8.39 25.60 0.21 -32.71 16 19 H 0.06 3.12 7.06 -2.91 -0.02 3.10 16 20 C -0.05 -2.59 5.46 84.65 0.46 -2.13 16 21 N -0.95 -59.09 13.65 21.45 0.29 -58.80 16 22 Si 1.12 49.14 29.90 68.60 2.05 51.19 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 C -0.11 -3.73 5.19 30.68 0.16 -3.57 16 27 C 0.11 2.65 6.35 86.38 0.55 3.19 16 28 H 0.06 0.72 4.81 -2.39 -0.01 0.71 16 29 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.06 0.65 6.54 -2.38 -0.02 0.63 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.07 0.88 6.43 -2.39 -0.02 0.86 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.18 6.43 -2.39 -0.02 1.16 16 38 H 0.05 1.35 5.95 -2.39 -0.01 1.33 16 39 H 0.11 1.74 7.70 -2.39 -0.02 1.72 16 40 H 0.12 1.65 6.50 -2.38 -0.02 1.64 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.08 2.43 7.01 -2.39 -0.02 2.42 16 43 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 46 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 16 47 H -0.02 -1.14 8.01 -2.38 -0.02 -1.16 16 48 H 0.25 16.09 7.22 -92.71 -0.67 15.42 16 49 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.08 2.65 6.91 -2.39 -0.02 2.63 16 51 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.11 1.92 5.93 -2.39 -0.01 1.91 16 Total: -1.00 -68.99 377.18 4.97 -64.02 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.97 Total: 17.41 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 4.14 Total: -35.31 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.14 Total: -77.66 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.04 Total: -19.65 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.05 Total: 51.19 kcal Total: -68.99 4.97 -64.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578535974.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.011 kcal (2) G-P(sol) polarization free energy of solvation -68.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds