Wall clock time and date at job start Fri Apr 10 2020 22:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50706 * 119.99778 * 2 1 4 4 C 1.30994 * 120.00359 * 179.97438 * 2 1 3 5 5 C 1.50706 * 119.99862 * 0.02562 * 4 2 1 6 6 C 1.53003 * 109.47140 * 125.00094 * 5 4 2 7 7 C 1.52994 * 109.47265 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.46970 * 304.99734 * 7 6 5 9 9 C 1.53001 * 109.47368 * 64.99313 * 7 6 5 10 10 C 1.52997 * 109.47404 * 184.99783 * 7 6 5 11 11 C 1.50701 * 109.47212 * 174.99684 * 10 7 6 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 7 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 7 14 14 C 1.46921 * 120.63059 * 359.72315 * 13 11 10 15 15 C 1.52760 * 109.00903 * 233.58159 * 14 13 11 16 16 C 1.53040 * 109.38219 * 305.58856 * 15 14 13 17 17 C 1.50698 * 109.45162 * 181.25116 * 16 15 14 18 18 H 1.07997 * 120.00517 * 239.94623 * 17 16 15 19 19 C 1.37880 * 119.99723 * 59.93708 * 17 16 15 20 20 N 1.31520 * 119.99773 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00036 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46814 * 90.00460 * 21 19 17 23 23 H 1.48497 * 109.47362 * 210.00048 * 21 19 17 24 24 H 1.48492 * 109.47376 * 330.00719 * 21 19 17 25 25 C 1.53042 * 109.53627 * 61.23932 * 16 15 14 26 26 C 1.46926 * 120.62707 * 180.02562 * 13 11 10 27 27 H 1.08997 * 109.46725 * 239.99814 * 1 2 3 28 28 H 1.08997 * 109.47215 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47004 * 120.00073 * 1 2 3 30 30 H 1.08999 * 109.47122 * 270.00057 * 3 2 1 31 31 H 1.09003 * 109.46982 * 30.00037 * 3 2 1 32 32 H 1.08994 * 109.46974 * 150.00188 * 3 2 1 33 33 H 1.07997 * 120.00472 * 179.97438 * 4 2 1 34 34 H 1.08992 * 109.46913 * 5.00082 * 5 4 2 35 35 H 1.09000 * 109.47109 * 244.99605 * 5 4 2 36 36 H 1.09001 * 109.47031 * 59.99391 * 6 5 4 37 37 H 1.09009 * 109.46835 * 299.99903 * 6 5 4 38 38 H 1.08996 * 109.47271 * 300.00893 * 9 7 6 39 39 H 1.09008 * 109.46731 * 60.00275 * 9 7 6 40 40 H 1.08998 * 109.47430 * 180.02562 * 9 7 6 41 41 H 1.09002 * 109.47153 * 54.99686 * 10 7 6 42 42 H 1.09001 * 109.46832 * 294.99876 * 10 7 6 43 43 H 1.08996 * 109.58649 * 353.41979 * 14 13 11 44 44 H 1.09004 * 109.58204 * 113.84425 * 14 13 11 45 45 H 1.09000 * 109.56394 * 185.56047 * 15 14 13 46 46 H 1.09001 * 109.38512 * 65.51568 * 15 14 13 47 47 H 1.09001 * 109.46468 * 301.22386 * 16 15 14 48 48 H 0.97002 * 119.99615 * 179.97438 * 20 19 17 49 49 H 1.09008 * 109.49904 * 178.67973 * 25 16 15 50 50 H 1.09000 * 109.52420 * 58.60476 * 25 16 15 51 51 H 1.09005 * 109.58410 * 246.15856 * 26 13 11 52 52 H 1.09001 * 109.58875 * 6.43498 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1621 -1.1344 0.0005 5 6 1.4086 -2.4396 0.0005 6 6 1.8706 -3.2952 -1.1808 7 6 1.1053 -4.6200 -1.1812 8 1 1.2273 -5.1104 -0.2153 9 6 -0.3798 -4.3510 -1.4325 10 6 1.6536 -5.5255 -2.2857 11 6 0.9854 -6.8740 -2.2078 12 8 0.1522 -7.0894 -1.3532 13 7 1.3130 -7.8403 -3.0884 14 6 2.3152 -7.5921 -4.1337 15 6 1.7124 -7.9398 -5.4936 16 6 1.1794 -9.3740 -5.4612 17 6 0.6121 -9.7292 -6.8113 18 1 -0.4271 -10.0083 -6.9040 19 6 1.4196 -9.6976 -7.9284 20 7 2.6852 -9.3580 -7.8155 21 14 0.7166 -10.1385 -9.6019 22 1 0.1881 -8.9140 -10.2550 23 1 1.7849 -10.7287 -10.4478 24 1 -0.3821 -11.1231 -9.4335 25 6 0.0818 -9.4883 -4.4008 26 6 0.6698 -9.1598 -3.0254 27 1 -0.3633 -0.5139 0.8900 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8900 30 1 2.4421 1.6199 -1.0277 31 1 1.6714 2.0648 0.5139 32 1 3.2129 1.1749 0.5138 33 1 3.2420 -1.1344 0.0001 34 1 0.3404 -2.2424 -0.0895 35 1 1.6028 -2.9712 0.9320 36 1 2.9389 -3.4923 -1.0908 37 1 1.6765 -2.7636 -2.1124 38 1 -0.7704 -3.7058 -0.6456 39 1 -0.5018 -3.8606 -2.3983 40 1 -0.9251 -5.2947 -1.4323 41 1 2.7294 -5.6451 -2.1569 42 1 1.4519 -5.0757 -3.2579 43 1 2.6034 -6.5410 -4.1212 44 1 3.1913 -8.2156 -3.9553 45 1 2.4777 -7.8535 -6.2649 46 1 0.8951 -7.2528 -5.7133 47 1 1.9923 -10.0581 -5.2174 48 1 3.2534 -9.3361 -8.6014 49 1 -0.3136 -10.5041 -4.3944 50 1 -0.7206 -8.7871 -4.6301 51 1 1.4088 -9.9140 -2.7546 52 1 -0.1255 -9.1435 -2.2801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581372090.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:34 Heat of formation + Delta-G solvation = -75.817051 kcal Electronic energy + Delta-G solvation = -25637.736469 eV Core-core repulsion = 22214.276831 eV Total energy + Delta-G solvation = -3423.459638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.225 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.21692 -38.86557 -38.14417 -36.37117 -35.30885 -33.21300 -32.11466 -31.54294 -29.05124 -28.65742 -27.69419 -27.24981 -24.82433 -24.05384 -23.43999 -21.59550 -20.73588 -19.64973 -18.69507 -18.56063 -17.81763 -16.95063 -16.57116 -16.38381 -16.20994 -15.48555 -15.28137 -15.03034 -14.87979 -14.80689 -14.58896 -14.33196 -14.20115 -13.82543 -13.59689 -13.29803 -13.23602 -13.18254 -13.06386 -12.84386 -12.79676 -12.65496 -12.49956 -12.41912 -12.24848 -12.14422 -11.95393 -11.89740 -11.58113 -11.44654 -11.43977 -11.24012 -11.00490 -10.85897 -10.55327 -10.38011 -9.49715 -9.48519 -8.08202 -6.21213 1.34559 1.40819 1.43022 1.51797 1.71527 2.16656 2.43800 3.18201 3.59260 3.82626 3.98063 4.00873 4.14572 4.16275 4.27351 4.29471 4.40519 4.46371 4.50318 4.55314 4.58952 4.64334 4.68735 4.72954 4.76986 4.78440 4.81714 4.84837 4.89098 4.95652 4.98537 4.99472 5.05771 5.14553 5.18476 5.19106 5.19756 5.22856 5.27849 5.38048 5.44089 5.53954 5.56864 5.58751 5.67416 5.88046 5.98841 6.11693 6.14457 6.39461 6.58967 6.88007 7.27083 7.46311 8.95160 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.002439 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.392649 B =11476.160353 C =12148.714442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.147 4.147 3 C -0.117 4.117 4 C -0.171 4.171 5 C -0.094 4.094 6 C -0.100 4.100 7 C -0.068 4.068 8 H 0.064 0.936 9 C -0.150 4.150 10 C -0.132 4.132 11 C 0.507 3.493 12 O -0.583 6.583 13 N -0.608 5.608 14 C 0.114 3.886 15 C -0.116 4.116 16 C 0.045 3.955 17 C -0.535 4.535 18 H 0.045 0.955 19 C 0.018 3.982 20 N -0.911 5.911 21 Si 0.948 3.052 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.274 1.274 25 C -0.113 4.113 26 C 0.117 3.883 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.027 0.973 47 H 0.003 0.997 48 H 0.262 0.738 49 H 0.061 0.939 50 H 0.040 0.960 51 H 0.067 0.933 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.250 17.512 14.260 22.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.147 4.147 3 C -0.173 4.173 4 C -0.189 4.189 5 C -0.131 4.131 6 C -0.138 4.138 7 C -0.087 4.087 8 H 0.083 0.917 9 C -0.207 4.207 10 C -0.172 4.172 11 C 0.298 3.702 12 O -0.464 6.464 13 N -0.340 5.340 14 C -0.008 4.008 15 C -0.155 4.155 16 C 0.027 3.973 17 C -0.573 4.573 18 H 0.064 0.936 19 C -0.181 4.181 20 N -0.550 5.550 21 Si 0.774 3.226 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.151 4.151 26 C -0.006 4.006 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.046 0.954 47 H 0.021 0.979 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.058 0.942 51 H 0.085 0.915 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.983 17.411 14.587 22.735 hybrid contribution -0.336 -0.737 -1.290 1.523 sum 0.647 16.674 13.297 21.336 Atomic orbital electron populations 1.20866 0.92200 1.02577 1.01972 1.21869 0.96298 0.95589 1.00929 1.20866 0.99701 0.94503 1.02278 1.22728 0.99630 0.93805 1.02726 1.20767 1.00114 0.93795 0.98414 1.21504 0.99894 0.93706 0.98676 1.20839 0.95367 0.94969 0.97499 0.91744 1.21935 0.96147 1.01343 1.01301 1.21846 1.02097 0.90948 1.02282 1.21314 0.81995 0.86954 0.79981 1.90588 1.35565 1.82439 1.37819 1.48352 1.41270 1.13100 1.31282 1.21820 0.90000 1.02272 0.86662 1.21717 1.00284 0.97621 0.95866 1.18608 0.92995 0.93333 0.92400 1.21540 0.96198 1.45757 0.93822 0.93621 1.25627 0.95240 0.95191 1.02065 1.69943 1.05802 1.48921 1.30353 0.85711 0.78109 0.78414 0.80327 1.20268 1.20774 1.19875 1.21835 0.98650 1.00205 0.94422 1.21522 0.97459 0.84027 0.97608 0.91595 0.91498 0.91750 0.91313 0.91333 0.91720 0.87139 0.90914 0.91430 0.90936 0.91658 0.91865 0.92987 0.93682 0.86911 0.87996 0.87944 0.91664 0.90127 0.95414 0.97918 0.92888 0.92076 0.94151 0.91507 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 8.53 71.24 0.61 -1.02 16 2 C -0.15 -2.19 6.05 -16.48 -0.10 -2.29 16 3 C -0.12 -1.38 9.97 71.24 0.71 -0.67 16 4 C -0.17 -2.67 9.11 25.65 0.23 -2.44 16 5 C -0.09 -1.53 5.21 29.85 0.16 -1.38 16 6 C -0.10 -1.70 4.66 30.59 0.14 -1.56 16 7 C -0.07 -1.48 2.04 -10.80 -0.02 -1.50 16 8 H 0.06 1.57 7.96 -2.38 -0.02 1.55 16 9 C -0.15 -3.59 8.69 71.98 0.63 -2.97 16 10 C -0.13 -3.10 3.52 29.85 0.11 -3.00 16 11 C 0.51 16.46 7.42 87.66 0.65 17.11 16 12 O -0.58 -22.16 13.38 -3.03 -0.04 -22.20 16 13 N -0.61 -20.93 2.98 -819.82 -2.44 -23.37 16 14 C 0.11 3.84 6.31 86.22 0.54 4.38 16 15 C -0.12 -5.06 5.14 30.53 0.16 -4.90 16 16 C 0.05 2.17 2.07 -11.51 -0.02 2.15 16 17 C -0.54 -28.88 8.56 25.60 0.22 -28.66 16 18 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 19 C 0.02 0.95 5.30 84.65 0.45 1.40 16 20 N -0.91 -49.91 11.31 21.45 0.24 -49.67 16 21 Si 0.95 42.72 29.54 68.60 2.03 44.75 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C -0.11 -4.69 5.30 30.66 0.16 -4.53 16 26 C 0.12 4.25 6.43 86.35 0.56 4.80 16 27 H 0.07 0.88 7.85 -2.39 -0.02 0.86 16 28 H 0.07 0.77 7.94 -2.39 -0.02 0.75 16 29 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.69 8.05 -2.39 -0.02 0.67 16 32 H 0.06 0.71 8.06 -2.39 -0.02 0.69 16 33 H 0.11 1.60 8.04 -2.91 -0.02 1.58 16 34 H 0.07 1.20 4.22 -2.39 -0.01 1.19 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.06 1.31 6.56 -2.39 -0.02 1.30 16 39 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.04 1.37 5.95 -2.39 -0.01 1.35 16 41 H 0.11 2.15 7.95 -2.39 -0.02 2.14 16 42 H 0.10 2.25 7.68 -2.39 -0.02 2.23 16 43 H 0.10 2.73 5.93 -2.39 -0.01 2.72 16 44 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.08 3.93 6.03 -2.39 -0.01 3.91 16 46 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 49 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 50 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 52 H 0.08 2.86 7.00 -2.39 -0.02 2.85 16 Total: -1.00 -60.97 395.32 5.81 -55.16 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.85 Total: 20.41 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 5.17 Total: -25.07 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -2.20 Total: -73.04 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.04 Total: -22.20 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -60.97 5.81 -55.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581372090.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.661 kcal (2) G-P(sol) polarization free energy of solvation -60.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds