Wall clock time and date at job start Fri Apr 10 2020 22:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47001 * 2 1 4 4 C 1.53008 * 109.47097 * 240.00455 * 2 1 3 5 5 N 1.46903 * 109.47155 * 62.82088 * 4 2 1 6 6 C 1.46842 * 111.00034 * 176.15540 * 5 4 2 7 7 C 1.53039 * 109.52417 * 174.15782 * 6 5 4 8 8 H 1.08999 * 109.50783 * 299.24572 * 7 6 5 9 9 C 1.52999 * 109.50206 * 179.12337 * 7 6 5 10 10 C 1.53119 * 109.27063 * 59.18614 * 7 6 5 11 11 C 1.53120 * 109.16341 * 302.34072 * 10 7 6 12 12 H 1.09004 * 109.50221 * 297.67952 * 11 10 7 13 13 C 1.52998 * 109.50604 * 177.60053 * 11 10 7 14 14 C 1.46851 * 110.99923 * 51.94678 * 5 4 2 15 15 N 1.46898 * 109.47519 * 120.00328 * 2 1 3 16 16 C 1.46893 * 110.99725 * 270.92670 * 15 2 1 17 17 C 1.53008 * 109.47016 * 180.02562 * 16 15 2 18 18 H 1.09000 * 109.47069 * 54.99343 * 17 16 15 19 19 C 1.47201 * 109.46831 * 294.99686 * 17 16 15 20 20 N 4.90932 * 82.40058 * 117.26310 * 2 1 3 21 21 C 1.52999 * 109.47380 * 175.00157 * 17 16 15 22 22 C 1.50701 * 109.46997 * 185.00040 * 21 17 16 23 23 H 1.08003 * 120.00035 * 359.97438 * 22 21 17 24 24 C 1.37875 * 119.99551 * 179.97438 * 22 21 17 25 25 N 1.31514 * 119.99734 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00314 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47579 * 89.99813 * 26 24 22 28 28 H 1.48505 * 109.47051 * 209.99982 * 26 24 22 29 29 H 1.48500 * 109.47422 * 329.99551 * 26 24 22 30 30 H 1.09001 * 109.47176 * 59.99845 * 1 2 3 31 31 H 1.08999 * 109.47040 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47001 * 299.99721 * 1 2 3 33 33 H 1.08992 * 109.47168 * 182.82191 * 4 2 1 34 34 H 1.08997 * 109.46979 * 302.82539 * 4 2 1 35 35 H 1.08994 * 109.46786 * 294.18114 * 6 5 4 36 36 H 1.09006 * 109.45936 * 54.15532 * 6 5 4 37 37 H 1.08994 * 109.47679 * 60.00452 * 9 7 6 38 38 H 1.09006 * 109.46912 * 180.02562 * 9 7 6 39 39 H 1.09004 * 109.47137 * 299.99981 * 9 7 6 40 40 H 1.09001 * 109.52926 * 62.25156 * 10 7 6 41 41 H 1.09012 * 109.51763 * 182.44052 * 10 7 6 42 42 H 1.08999 * 109.47044 * 60.00330 * 13 11 10 43 43 H 1.08993 * 109.47098 * 179.97438 * 13 11 10 44 44 H 1.08996 * 109.46989 * 300.00358 * 13 11 10 45 45 H 1.08999 * 109.46073 * 305.85681 * 14 5 4 46 46 H 1.09000 * 109.45822 * 65.82100 * 14 5 4 47 47 H 1.00894 * 111.00236 * 146.96754 * 15 2 1 48 48 H 1.08995 * 109.47311 * 299.99365 * 16 15 2 49 49 H 1.08996 * 109.47619 * 59.99824 * 16 15 2 50 50 H 1.09009 * 109.46626 * 304.99416 * 21 17 16 51 51 H 1.08998 * 109.47423 * 64.99392 * 21 17 16 52 52 H 0.96997 * 120.00592 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6068 0.0096 -2.4478 6 6 2.1549 -0.6030 -3.6646 7 6 1.5686 0.0918 -4.8957 8 1 0.4852 -0.0276 -4.8995 9 6 2.1566 -0.5323 -6.1628 10 6 1.9187 1.5817 -4.8498 11 6 1.3785 2.1852 -3.5503 12 1 0.2920 2.0993 -3.5333 13 6 1.7757 3.6604 -3.4683 14 6 1.9702 1.4297 -2.3583 15 7 2.0198 -0.6925 1.1994 16 6 2.1744 0.2431 2.3212 17 6 2.6855 -0.5131 3.5492 18 1 3.6041 -1.0415 3.2941 19 6 1.6677 -1.4819 3.9876 20 7 0.8808 -2.2291 4.3256 21 6 2.9650 0.4795 4.6795 22 6 3.5833 -0.2482 5.8455 23 1 3.7589 -1.3122 5.7863 24 6 3.9248 0.4446 6.9876 25 7 4.4638 -0.1905 8.0053 26 14 3.6204 2.2847 7.0901 27 1 2.2651 2.5323 7.6440 28 1 4.6380 2.9062 7.9753 29 1 3.7164 2.8787 5.7325 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1288 -0.7652 -1.2244 34 1 1.6359 -1.7332 -1.2751 35 1 3.2395 -0.4951 -3.6687 36 1 1.8952 -1.6614 -3.6869 37 1 1.9102 -1.5936 -6.1933 38 1 1.7390 -0.0368 -7.0394 39 1 3.2398 -0.4107 -6.1588 40 1 3.0013 1.7029 -4.8853 41 1 1.4663 2.0885 -5.7024 42 1 1.3569 4.1973 -4.3194 43 1 1.3906 4.0895 -2.5434 44 1 2.8622 3.7455 -3.4840 45 1 1.5765 1.8475 -1.4317 46 1 3.0557 1.5280 -2.3684 47 1 2.8848 -1.1760 1.0098 48 1 2.8888 1.0203 2.0503 49 1 1.2110 0.6988 2.5497 50 1 3.6517 1.2488 4.3259 51 1 2.0306 0.9436 4.9949 52 1 4.7038 0.2967 8.8090 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584226718.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:54 Heat of formation + Delta-G solvation = -17.617178 kcal Electronic energy + Delta-G solvation = -25636.708552 eV Core-core repulsion = 22248.065402 eV Total energy + Delta-G solvation = -3388.643151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.232 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.61849 -38.96993 -37.44170 -35.73849 -34.96526 -34.37015 -33.59082 -31.04249 -28.38647 -27.83101 -27.47354 -27.22845 -24.55063 -23.29178 -23.17034 -21.90227 -20.87254 -20.51839 -18.91256 -18.49600 -17.23717 -16.54262 -16.40673 -16.15191 -15.79339 -15.58204 -15.38921 -15.25122 -15.04811 -14.65113 -14.47932 -14.26415 -13.82417 -13.68174 -13.52455 -13.40244 -13.30015 -13.29506 -13.15959 -12.99675 -12.81257 -12.69864 -12.61191 -12.50867 -12.33388 -12.10748 -11.93655 -11.72017 -11.68364 -11.66736 -11.48357 -11.43378 -11.29226 -11.08934 -10.92278 -10.73889 -9.31849 -9.21237 -8.24666 -6.30269 1.43205 1.44209 1.55102 2.06668 2.13795 2.40874 2.75671 3.11650 3.28703 3.41249 3.78074 3.78609 3.91433 4.00610 4.07214 4.13867 4.28342 4.36065 4.40172 4.44925 4.51414 4.64809 4.66823 4.68165 4.70531 4.74884 4.78692 4.82168 4.86526 4.87437 4.90947 4.94925 4.97012 5.09097 5.11148 5.13770 5.17443 5.25147 5.26341 5.34406 5.38437 5.42657 5.44720 5.51645 5.60332 5.63846 6.07261 6.16390 6.20819 6.27103 6.54001 6.77457 6.92330 7.34107 8.92264 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.002570 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.805258 B =10892.891320 C =11635.014163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.090 3.910 3 H 0.058 0.942 4 C 0.061 3.939 5 N -0.538 5.538 6 C 0.062 3.938 7 C -0.086 4.086 8 H 0.071 0.929 9 C -0.143 4.143 10 C -0.107 4.107 11 C -0.087 4.087 12 H 0.071 0.929 13 C -0.144 4.144 14 C 0.053 3.947 15 N -0.699 5.699 16 C 0.079 3.921 17 C 0.026 3.974 18 H 0.117 0.883 19 C 0.262 3.738 20 N -0.517 5.517 21 C -0.003 4.003 22 C -0.530 4.530 23 H 0.029 0.971 24 C 0.002 3.998 25 N -0.954 5.954 26 Si 0.948 3.052 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.222 1.222 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.028 0.972 47 H 0.348 0.652 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.024 0.976 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 8.525 -32.127 33.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.020 4.020 3 H 0.076 0.924 4 C -0.067 4.067 5 N -0.262 5.262 6 C -0.066 4.066 7 C -0.105 4.105 8 H 0.089 0.911 9 C -0.201 4.201 10 C -0.145 4.145 11 C -0.106 4.106 12 H 0.089 0.911 13 C -0.202 4.202 14 C -0.074 4.074 15 N -0.333 5.333 16 C -0.052 4.052 17 C 0.004 3.996 18 H 0.135 0.865 19 C -0.054 4.054 20 N -0.194 5.194 21 C -0.042 4.042 22 C -0.568 4.568 23 H 0.047 0.953 24 C -0.195 4.195 25 N -0.595 5.595 26 Si 0.771 3.229 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.145 1.145 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.097 0.903 46 H 0.046 0.954 47 H 0.168 0.832 48 H 0.093 0.907 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.042 0.958 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.581 7.165 -31.301 32.592 hybrid contribution 1.966 0.808 0.772 2.261 sum -3.616 7.973 -30.529 31.760 Atomic orbital electron populations 1.21616 0.94478 1.01235 1.00817 1.21567 0.96311 0.96217 0.87874 0.92383 1.22178 0.97416 0.98150 0.88995 1.61887 1.60047 1.02516 1.01758 1.22150 0.96398 0.98684 0.89359 1.21129 1.00613 0.94978 0.93807 0.91073 1.21764 1.00827 1.00808 0.96684 1.21694 1.00578 0.94865 0.97344 1.21133 1.00586 0.94728 0.94120 0.91054 1.21771 1.01416 0.94788 1.02227 1.22298 0.97633 0.88012 0.99494 1.60442 1.36720 1.30281 1.05831 1.21970 1.01636 0.93467 0.88085 1.19067 0.92778 0.92000 0.95773 0.86543 1.29462 0.92978 0.92750 0.90205 1.81019 1.13566 1.12775 1.12052 1.19591 0.97471 0.95100 0.92035 1.21407 1.40325 0.95201 0.99893 0.95282 1.26053 0.94258 1.04192 0.94998 1.70088 1.44548 1.38736 1.06139 0.85698 0.77662 0.79069 0.80480 1.20334 1.21555 1.14466 0.91148 0.93891 0.94257 0.94549 0.90541 0.95213 0.90922 0.92405 0.91824 0.92733 0.92417 0.91157 0.91820 0.92494 0.92770 0.90268 0.95392 0.83208 0.90695 0.90715 0.91713 0.95752 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.30 71.98 0.67 -1.94 16 2 C 0.09 1.69 2.24 44.92 0.10 1.79 16 3 H 0.06 1.02 5.61 -2.38 -0.01 1.01 16 4 C 0.06 1.03 4.51 86.31 0.39 1.42 16 5 N -0.54 -8.53 4.12 -896.37 -3.69 -12.23 16 6 C 0.06 0.88 4.74 86.33 0.41 1.29 16 7 C -0.09 -1.04 2.88 -10.74 -0.03 -1.07 16 8 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 9 C -0.14 -1.38 9.20 71.98 0.66 -0.72 16 10 C -0.11 -1.21 4.57 30.67 0.14 -1.07 16 11 C -0.09 -1.09 2.88 -10.74 -0.03 -1.12 16 12 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 13 C -0.14 -1.55 9.20 71.98 0.66 -0.88 16 14 C 0.05 0.78 4.32 86.32 0.37 1.15 16 15 N -0.70 -15.59 6.02 -491.56 -2.96 -18.56 16 16 C 0.08 1.91 4.85 86.31 0.42 2.33 16 17 C 0.03 0.85 2.35 -12.60 -0.03 0.82 16 18 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 19 C 0.26 10.81 13.67 89.44 1.22 12.03 16 20 N -0.52 -24.00 18.54 20.01 0.37 -23.63 16 21 C 0.00 -0.12 3.49 29.85 0.10 -0.01 16 22 C -0.53 -28.64 9.15 25.60 0.23 -28.40 16 23 H 0.03 1.78 7.84 -2.91 -0.02 1.75 16 24 C 0.00 0.09 5.47 84.65 0.46 0.55 16 25 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 26 Si 0.95 41.48 27.47 68.60 1.88 43.37 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 28 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 29 H -0.22 -8.21 6.54 99.48 0.65 -7.56 16 30 H 0.07 1.36 7.69 -2.39 -0.02 1.35 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.04 0.89 7.75 -2.39 -0.02 0.87 16 33 H 0.04 0.59 8.07 -2.39 -0.02 0.57 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.03 0.43 8.14 -2.39 -0.02 0.42 16 36 H 0.07 1.04 8.12 -2.38 -0.02 1.02 16 37 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.08 1.21 5.74 -2.39 -0.01 1.19 16 46 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.35 6.89 8.26 -89.70 -0.74 6.15 16 48 H 0.08 1.46 8.05 -2.39 -0.02 1.45 16 49 H 0.07 1.90 7.74 -2.39 -0.02 1.88 16 50 H 0.06 2.29 7.20 -2.38 -0.02 2.28 16 51 H 0.02 0.97 7.57 -2.39 -0.02 0.96 16 52 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -68.12 403.78 1.72 -66.40 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.06 Total: 17.48 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.76 Total: -13.84 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -5.99 Total: -113.40 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.37 kcal Total: -68.12 1.72 -66.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584226718.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.784 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds