Wall clock time and date at job start Fri Apr 10 2020 22:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.54830 * 2 1 4 4 C 1.53065 * 109.50975 * 239.87835 * 2 1 3 5 5 C 1.52730 * 109.59903 * 301.40813 * 4 2 1 6 6 N 1.47032 * 109.12265 * 306.08494 * 5 4 2 7 7 C 1.34774 * 120.76125 * 233.10229 * 6 5 4 8 8 O 1.21276 * 119.99994 * 184.93108 * 7 6 5 9 9 C 1.50703 * 120.00064 * 4.93081 * 7 6 5 10 10 C 1.53002 * 109.46874 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46833 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47195 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.46905 * 179.97438 * 12 11 10 14 14 H 1.07991 * 120.00456 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99663 * 179.97438 * 13 12 11 16 16 N 1.31505 * 119.99864 * 179.72552 * 15 13 12 17 17 Si 1.86800 * 119.99935 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47201 * 89.99663 * 17 15 13 19 19 H 1.48495 * 109.47283 * 210.00140 * 17 15 13 20 20 H 1.48504 * 109.47017 * 330.00127 * 17 15 13 21 21 C 1.46756 * 118.47273 * 52.82981 * 6 5 4 22 22 H 1.09008 * 109.32095 * 64.81070 * 21 6 5 23 23 C 1.52564 * 110.12570 * 184.93625 * 21 6 5 24 24 C 1.52976 * 109.88184 * 61.45412 * 23 21 6 25 25 C 1.53047 * 109.21503 * 59.77008 * 24 23 21 26 26 C 1.52915 * 109.29053 * 299.34081 * 25 24 23 27 27 C 1.53076 * 108.85400 * 305.99566 * 21 6 5 28 28 H 1.09007 * 109.69115 * 176.70145 * 27 21 6 29 29 H 1.08994 * 109.47297 * 299.87299 * 1 2 3 30 30 H 1.09001 * 109.47607 * 59.87839 * 1 2 3 31 31 H 1.09006 * 109.47180 * 179.87370 * 1 2 3 32 32 H 1.08994 * 109.46240 * 61.55357 * 4 2 1 33 33 H 1.09002 * 109.45997 * 181.52338 * 4 2 1 34 34 H 1.08991 * 109.48882 * 186.16821 * 5 4 2 35 35 H 1.09002 * 109.40584 * 65.95204 * 5 4 2 36 36 H 1.09007 * 109.46761 * 60.00037 * 9 7 6 37 37 H 1.08998 * 109.47195 * 300.00444 * 9 7 6 38 38 H 1.08996 * 109.47011 * 60.00180 * 10 9 7 39 39 H 1.09002 * 109.46954 * 299.99952 * 10 9 7 40 40 H 1.08998 * 109.47257 * 59.99615 * 11 10 9 41 41 H 1.09005 * 109.46593 * 299.99911 * 11 10 9 42 42 H 1.09005 * 109.46739 * 59.99727 * 12 11 10 43 43 H 1.08995 * 109.46860 * 299.99899 * 12 11 10 44 44 H 0.97001 * 120.00182 * 179.97438 * 16 15 13 45 45 H 1.09004 * 109.40207 * 181.57466 * 23 21 6 46 46 H 1.08992 * 109.40632 * 301.32503 * 23 21 6 47 47 H 1.08998 * 109.51443 * 179.69610 * 24 23 21 48 48 H 1.09004 * 109.51072 * 299.84925 * 24 23 21 49 49 H 1.09000 * 109.50510 * 59.28839 * 25 24 23 50 50 H 1.09000 * 109.50228 * 179.36534 * 25 24 23 51 51 H 1.09002 * 109.42554 * 180.64364 * 26 25 24 52 52 H 1.08999 * 109.43188 * 300.53653 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0412 -0.7240 -1.2479 5 6 1.5055 -2.1542 -1.2660 6 7 1.8475 -2.8127 0.0034 7 6 2.4913 -3.9967 0.0142 8 8 2.6874 -4.5707 1.0644 9 6 2.9675 -4.6073 -1.2786 10 6 3.6617 -5.9394 -0.9882 11 6 4.1458 -6.5591 -2.3007 12 6 4.8394 -7.8915 -2.0104 13 6 5.3156 -8.5021 -3.3032 14 1 5.1407 -7.9911 -4.2384 15 6 5.9747 -9.7131 -3.2921 16 7 6.3855 -10.2485 -4.4208 17 14 6.2767 -10.5973 -1.6745 18 1 5.1333 -11.4986 -1.3821 19 1 7.5245 -11.3964 -1.7726 20 1 6.4123 -9.5996 -0.5829 21 6 1.4771 -2.1481 1.2583 22 1 0.3908 -2.0955 1.3316 23 6 2.0261 -2.9295 2.4481 24 6 3.5536 -2.9775 2.3789 25 6 4.1041 -1.5497 2.4048 26 6 3.5711 -0.7807 1.1954 27 6 2.0423 -0.7255 1.2503 28 1 1.7257 -0.1994 2.1510 29 1 -0.3633 0.5118 0.8911 30 1 -0.3634 0.5157 -0.8889 31 1 -0.3634 -1.0277 -0.0023 32 1 1.7011 -0.1963 -2.1389 33 1 3.1309 -0.7473 -1.2335 34 1 1.9565 -2.7010 -2.0939 35 1 0.4224 -2.1338 -1.3864 36 1 3.6706 -3.9296 -1.7632 37 1 2.1149 -4.7771 -1.9360 38 1 2.9591 -6.6172 -0.5034 39 1 4.5145 -5.7690 -0.3310 40 1 4.8485 -5.8811 -2.7851 41 1 3.2932 -6.7293 -2.9582 42 1 4.1362 -8.5692 -1.5262 43 1 5.6918 -7.7216 -1.3527 44 1 6.8495 -11.1003 -4.4130 45 1 1.7208 -2.4416 3.3738 46 1 1.6307 -3.9450 2.4280 47 1 3.9396 -3.5323 3.2341 48 1 3.8609 -3.4695 1.4560 49 1 3.7849 -1.0532 3.3212 50 1 5.1930 -1.5788 2.3671 51 1 3.9710 0.2332 1.2055 52 1 3.8821 -1.2840 0.2799 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588635046.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:10 Heat of formation + Delta-G solvation = -37.135595 kcal Electronic energy + Delta-G solvation = -27182.244442 eV Core-core repulsion = 23760.462158 eV Total energy + Delta-G solvation = -3421.782284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.225 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67673 -38.57614 -36.18074 -34.94916 -33.94043 -32.58598 -31.20625 -30.19100 -29.70783 -28.05811 -25.92270 -24.69476 -23.14759 -22.97424 -21.89745 -20.42897 -19.99924 -19.84902 -17.77262 -16.98642 -16.55611 -16.20610 -16.01415 -15.49090 -15.23244 -15.09507 -14.42279 -14.19025 -13.69549 -13.62121 -13.60242 -13.29186 -13.08024 -12.64053 -12.55573 -12.50775 -12.21257 -12.10730 -11.97805 -11.74084 -11.69635 -11.44476 -11.32083 -11.25321 -11.10940 -10.73014 -10.56539 -10.52870 -10.31736 -10.12087 -9.92781 -9.83978 -9.63464 -9.52543 -9.10993 -8.92915 -8.48288 -8.44320 -5.99507 -3.96808 2.67257 2.90546 3.36185 3.43160 3.49238 4.26786 4.32636 4.41117 4.51135 4.63095 4.70978 4.80788 4.92537 4.96502 5.10129 5.13654 5.21257 5.25772 5.26213 5.29362 5.31691 5.35359 5.35863 5.44276 5.51122 5.53037 5.63818 5.65242 5.69103 5.75511 5.82382 5.84467 5.94678 6.01640 6.05604 6.10377 6.15654 6.19275 6.26695 6.33699 6.44991 6.60083 6.67744 6.70927 6.84361 7.01106 7.38731 7.40714 7.52800 7.86216 8.25587 8.59671 9.05700 9.64027 11.14082 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.023095 B = 0.002993 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.073790 B = 9352.767077 C = 9966.386051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.135 4.135 5 C 0.106 3.894 6 N -0.607 5.607 7 C 0.503 3.497 8 O -0.511 6.511 9 C -0.140 4.140 10 C -0.105 4.105 11 C -0.102 4.102 12 C -0.015 4.015 13 C -0.519 4.519 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.906 5.906 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.264 1.264 21 C 0.153 3.847 22 H 0.067 0.933 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.126 4.126 26 C -0.112 4.112 27 C -0.093 4.093 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.011 0.989 43 H 0.015 0.985 44 H 0.262 0.738 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.052 0.948 48 H 0.098 0.902 49 H 0.052 0.948 50 H 0.056 0.944 51 H 0.055 0.945 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.445 24.994 11.161 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.173 4.173 5 C -0.017 4.017 6 N -0.342 5.342 7 C 0.293 3.707 8 O -0.388 6.388 9 C -0.180 4.180 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.052 4.052 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.546 5.546 17 Si 0.707 3.293 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.189 1.189 21 C 0.050 3.950 22 H 0.085 0.915 23 C -0.148 4.148 24 C -0.162 4.162 25 C -0.164 4.164 26 C -0.150 4.150 27 C -0.112 4.112 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.029 0.971 43 H 0.033 0.967 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.071 0.929 48 H 0.116 0.884 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.074 0.926 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.255 24.516 11.647 29.780 hybrid contribution 0.175 -0.331 0.672 0.769 sum -12.080 24.185 12.320 29.709 Atomic orbital electron populations 1.21955 0.95222 1.02160 1.01677 1.21180 0.95690 0.99155 0.94560 0.91051 1.21954 1.01782 0.95450 0.98142 1.21684 1.00457 0.93438 0.86153 1.48014 1.58838 1.20871 1.06495 1.20803 0.77497 0.80643 0.91716 1.90695 1.54890 1.61145 1.32082 1.21829 1.01795 0.99329 0.95013 1.21477 0.99983 0.93570 0.99246 1.21471 0.99583 0.98184 0.94746 1.19568 0.95378 0.92786 0.97482 1.21191 1.36228 1.05011 0.93276 0.91131 1.25042 0.95204 0.97203 0.96156 1.69917 1.39973 1.18740 1.25954 0.86774 0.77697 0.79951 0.84894 1.20322 1.21477 1.18888 1.21093 0.98118 0.91531 0.84292 0.91507 1.21811 0.97008 1.01270 0.94686 1.22226 0.94871 0.94641 1.04413 1.21665 0.99851 0.97293 0.97576 1.21596 0.94379 0.99782 0.99198 1.21624 0.96163 0.95558 0.97904 0.90358 0.92736 0.92597 0.92121 0.90735 0.90852 0.89292 0.91284 0.89383 0.89305 0.91834 0.91898 0.92943 0.92958 0.97103 0.96661 0.92827 0.93502 0.88876 0.92912 0.88401 0.92893 0.92535 0.92578 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.40 37.16 0.31 -0.58 16 2 C -0.09 -0.57 2.76 -90.40 -0.25 -0.82 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.14 -0.88 5.22 -26.84 -0.14 -1.02 16 5 C 0.11 0.79 5.85 -3.89 -0.02 0.77 16 6 N -0.61 -6.07 2.33 -165.87 -0.39 -6.46 16 7 C 0.50 6.44 6.30 -10.99 -0.07 6.37 16 8 O -0.51 -7.92 9.48 5.56 0.05 -7.86 16 9 C -0.14 -1.76 4.06 -27.88 -0.11 -1.87 16 10 C -0.10 -1.73 4.50 -26.73 -0.12 -1.86 16 11 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 12 C -0.01 -0.36 4.04 -27.88 -0.11 -0.48 16 13 C -0.52 -15.14 9.66 -34.44 -0.33 -15.48 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.91 -28.51 13.96 55.43 0.77 -27.73 16 17 Si 0.88 22.44 27.47 -169.99 -4.67 17.77 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 21 C 0.15 1.46 2.55 -67.98 -0.17 1.28 16 22 H 0.07 0.60 6.47 -51.92 -0.34 0.27 16 23 C -0.11 -1.26 4.85 -26.97 -0.13 -1.39 16 24 C -0.12 -1.54 4.78 -26.72 -0.13 -1.67 16 25 C -0.13 -1.29 5.92 -26.75 -0.16 -1.44 16 26 C -0.11 -1.00 4.65 -26.74 -0.12 -1.13 16 27 C -0.09 -0.74 2.21 -90.35 -0.20 -0.94 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 4.91 -51.93 -0.26 0.14 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.54 6.16 -51.93 -0.32 0.22 16 34 H 0.09 0.63 5.95 -51.93 -0.31 0.32 16 35 H 0.07 0.46 6.75 -51.93 -0.35 0.11 16 36 H 0.09 0.99 7.89 -51.92 -0.41 0.58 16 37 H 0.09 0.99 7.76 -51.93 -0.40 0.59 16 38 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 43 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.09 1.27 6.17 -51.93 -0.32 0.95 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 1.42 4.38 -55.20 -0.24 1.18 16 49 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.07 0.67 5.70 -51.93 -0.30 0.37 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -31.90 367.48 -10.20 -42.09 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -9.51 Total: -2.80 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -2.00 Total: -20.55 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.39 Total: -34.19 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.05 Total: -7.86 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.90 -10.20 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588635046.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.957 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds