Wall clock time and date at job start Fri Apr 10 2020 22:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47491 * 2 1 4 4 C 1.52998 * 109.47506 * 120.00131 * 2 1 3 5 5 C 1.53007 * 109.46798 * 65.70406 * 4 2 1 6 6 H 1.09000 * 109.47185 * 303.91545 * 5 4 2 7 7 C 1.52998 * 109.46853 * 63.91588 * 5 4 2 8 8 N 1.46899 * 109.47097 * 174.99493 * 7 5 4 9 9 C 1.48536 * 110.99890 * 52.60869 * 8 7 5 10 10 C 1.54931 * 103.23190 * 159.72021 * 9 8 7 11 11 C 1.54599 * 102.91975 * 322.58580 * 10 9 8 12 12 C 1.47900 * 110.99919 * 169.99820 * 8 7 5 13 13 N 1.46900 * 109.46840 * 183.91188 * 5 4 2 14 14 C 1.46902 * 110.99756 * 85.02866 * 13 5 4 15 15 C 1.53001 * 109.46894 * 174.40776 * 14 13 5 16 16 H 1.08993 * 109.47425 * 305.00163 * 15 14 13 17 17 C 1.47197 * 109.47068 * 65.00314 * 15 14 13 18 18 N 6.61565 * 108.39776 * 114.25224 * 2 1 3 19 19 C 1.53005 * 109.46749 * 184.99928 * 15 14 13 20 20 C 1.50703 * 109.46857 * 175.00334 * 19 15 14 21 21 H 1.08001 * 119.99791 * 0.02562 * 20 19 15 22 22 C 1.37877 * 119.99851 * 180.02562 * 20 19 15 23 23 N 1.31511 * 120.00101 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47022 * 59.99737 * 24 22 20 26 26 H 1.48497 * 109.46965 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46709 * 299.99788 * 24 22 20 28 28 H 1.08998 * 109.47068 * 302.32523 * 1 2 3 29 29 H 1.09008 * 109.47094 * 62.31979 * 1 2 3 30 30 H 1.09004 * 109.47385 * 182.32218 * 1 2 3 31 31 H 1.09006 * 109.47245 * 240.00215 * 2 1 3 32 32 H 1.08994 * 109.47259 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47102 * 299.99967 * 3 2 1 34 34 H 1.08999 * 109.46453 * 60.00211 * 3 2 1 35 35 H 1.09002 * 109.47187 * 305.71205 * 4 2 1 36 36 H 1.08998 * 109.47864 * 185.70952 * 4 2 1 37 37 H 1.08995 * 109.47528 * 294.99964 * 7 5 4 38 38 H 1.09003 * 109.47700 * 54.99958 * 7 5 4 39 39 H 1.09005 * 110.66266 * 278.15519 * 9 8 7 40 40 H 1.08998 * 110.66689 * 41.27921 * 9 8 7 41 41 H 1.08994 * 110.72591 * 204.22759 * 10 9 8 42 42 H 1.09005 * 110.72652 * 80.93729 * 10 9 8 43 43 H 1.09005 * 110.30402 * 263.04317 * 11 10 9 44 44 H 1.08995 * 110.30953 * 140.87678 * 11 10 9 45 45 H 1.08997 * 109.92342 * 333.51198 * 12 8 7 46 46 H 1.08997 * 109.91559 * 94.61201 * 12 8 7 47 47 H 1.00896 * 111.00385 * 321.07241 * 13 5 4 48 48 H 1.08999 * 109.47198 * 54.41565 * 14 13 5 49 49 H 1.08998 * 109.47535 * 294.41283 * 14 13 5 50 50 H 1.08995 * 109.47266 * 295.00069 * 19 15 14 51 51 H 1.08998 * 109.46999 * 55.00666 * 19 15 14 52 52 H 0.97003 * 120.00089 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6504 -2.1992 1.1795 6 1 0.5707 -2.2850 1.0570 7 6 2.3525 -2.8561 -0.0107 8 7 2.0746 -4.2985 -0.0081 9 6 0.6141 -4.5591 0.0667 10 6 0.4852 -6.0096 -0.4620 11 6 1.5411 -6.0615 -1.5900 12 6 2.5326 -4.9288 -1.2652 13 7 2.0575 -2.8719 2.4203 14 6 1.0345 -2.7171 3.4631 15 6 1.4269 -3.5438 4.6893 16 1 1.5911 -4.5794 4.3919 17 6 2.6635 -2.9990 5.2730 18 7 3.6179 -2.5785 5.7235 19 6 0.3035 -3.4828 5.7262 20 6 0.6349 -4.3940 6.8799 21 1 1.5550 -4.9596 6.8743 22 6 -0.2364 -4.5055 7.9426 23 7 -1.3565 -3.8164 7.9497 24 14 0.1747 -5.6344 9.3731 25 1 1.4489 -5.1974 9.9982 26 1 -0.9162 -5.5763 10.3789 27 1 0.3180 -7.0274 8.8788 28 1 -0.3633 0.5495 0.8684 29 1 -0.3634 0.4774 -0.9101 30 1 -0.3634 -1.0268 0.0416 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.5956 -0.2699 2.1363 36 1 3.1251 -0.6336 1.3018 37 1 1.9840 -2.4167 -0.9377 38 1 3.4275 -2.6931 0.0663 39 1 0.2638 -4.4925 1.0968 40 1 0.0666 -3.8665 -0.5724 41 1 -0.5137 -6.1876 -0.8603 42 1 0.7228 -6.7286 0.3221 43 1 1.0702 -5.8863 -2.5573 44 1 2.0520 -7.0243 -1.5859 45 1 2.5335 -4.1940 -2.0703 46 1 3.5351 -5.3356 -1.1328 47 1 2.9527 -2.5325 2.7387 48 1 0.0734 -3.0640 3.0836 49 1 0.9569 -1.6665 3.7429 50 1 0.1991 -2.4604 6.0892 51 1 -0.6320 -3.8030 5.2676 52 1 -1.9698 -3.8952 8.6971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591769545.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:12 Heat of formation + Delta-G solvation = -15.941885 kcal Electronic energy + Delta-G solvation = -26271.554358 eV Core-core repulsion = 22882.983854 eV Total energy + Delta-G solvation = -3388.570504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 307.232 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.35676 -38.82469 -37.93580 -36.03302 -35.29245 -33.82408 -32.36507 -29.96343 -29.57944 -28.04684 -27.72882 -26.20672 -24.32596 -23.51448 -22.80405 -21.58595 -21.45257 -20.20808 -18.54169 -18.18515 -17.30131 -16.92427 -16.65522 -16.13824 -15.94074 -15.66039 -15.18061 -14.92440 -14.82262 -14.46113 -14.38574 -14.18871 -13.97310 -13.85731 -13.52707 -13.41858 -13.24213 -13.06999 -13.02599 -12.85594 -12.80399 -12.53933 -12.45561 -12.31420 -12.20978 -12.09433 -12.06349 -11.86508 -11.80924 -11.73668 -11.44857 -11.34684 -11.29914 -11.25339 -11.01490 -10.53500 -9.14014 -9.02671 -8.18039 -6.26044 1.41742 1.42861 1.50230 1.98727 2.01545 2.42590 3.11252 3.17134 3.30098 3.33787 3.77671 3.86680 3.96560 4.01789 4.08163 4.21033 4.26095 4.26957 4.43901 4.47413 4.48307 4.50909 4.64925 4.73623 4.75794 4.79234 4.83792 4.86066 4.89159 4.95489 5.00160 5.03965 5.05886 5.08063 5.09958 5.12398 5.16200 5.24517 5.31138 5.38381 5.44518 5.45932 5.48741 5.52067 5.65402 5.81053 6.11390 6.21003 6.23977 6.35559 6.52727 6.79457 6.89292 7.42295 8.92661 Molecular weight = 307.23amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.003626 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.886263 B = 7719.549341 C = 9030.131848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.147 4.147 4 C -0.142 4.142 5 C 0.093 3.907 6 H 0.085 0.915 7 C 0.067 3.933 8 N -0.511 5.511 9 C 0.039 3.961 10 C -0.125 4.125 11 C -0.126 4.126 12 C 0.032 3.968 13 N -0.668 5.668 14 C 0.083 3.917 15 C 0.023 3.977 16 H 0.118 0.882 17 C 0.255 3.745 18 N -0.508 5.508 19 C 0.040 3.960 20 C -0.539 4.539 21 H 0.052 0.948 22 C 0.013 3.987 23 N -0.923 5.923 24 Si 0.946 3.054 25 H -0.281 1.281 26 H -0.281 1.281 27 H -0.263 1.263 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.043 0.957 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.332 0.668 48 H 0.098 0.902 49 H 0.028 0.972 50 H -0.001 1.001 51 H 0.035 0.965 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 3.021 -24.525 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.181 4.181 5 C -0.017 4.017 6 H 0.103 0.897 7 C -0.062 4.062 8 N -0.235 5.235 9 C -0.088 4.088 10 C -0.163 4.163 11 C -0.164 4.164 12 C -0.096 4.096 13 N -0.296 5.296 14 C -0.047 4.047 15 C 0.001 3.999 16 H 0.136 0.864 17 C -0.061 4.061 18 N -0.186 5.186 19 C 0.002 3.998 20 C -0.578 4.578 21 H 0.070 0.930 22 C -0.186 4.186 23 N -0.563 5.563 24 Si 0.772 3.228 25 H -0.207 1.207 26 H -0.206 1.206 27 H -0.188 1.188 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.149 0.851 48 H 0.116 0.884 49 H 0.046 0.954 50 H 0.017 0.983 51 H 0.053 0.947 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.571 2.841 -23.497 23.936 hybrid contribution -0.443 0.763 0.806 1.195 sum 3.128 3.604 -22.690 23.187 Atomic orbital electron populations 1.21895 0.95031 1.01843 1.01857 1.21083 0.96014 0.96138 0.97628 1.21842 1.00917 0.95898 1.01799 1.22346 1.01030 0.96073 0.98674 1.21715 1.00049 0.90261 0.89721 0.89739 1.22260 1.00270 0.87616 0.96062 1.64703 1.13624 1.11494 1.33691 1.23167 0.88662 0.96018 1.00970 1.22476 0.99272 0.96530 0.98025 1.22368 0.96492 0.98818 0.98728 1.22919 0.99495 0.96549 0.90657 1.60538 1.04492 1.60858 1.03753 1.21868 0.96511 0.96847 0.89493 1.19186 0.85609 1.00678 0.94467 0.86382 1.29654 0.93725 0.91489 0.91259 1.81019 1.14307 1.12000 1.11281 1.18965 0.92908 0.95889 0.92081 1.21527 1.05225 1.26088 1.04911 0.92964 1.25684 0.94979 0.97191 1.00721 1.70022 1.11194 1.42446 1.32628 0.85781 0.77490 0.80131 0.79384 1.20719 1.20627 1.18803 0.93357 0.91909 0.92542 0.90351 0.92753 0.91854 0.93450 0.92887 0.92010 0.93403 0.91605 0.90657 0.93894 0.90261 0.91833 0.90658 0.90985 0.93639 0.91201 0.85067 0.88362 0.95422 0.98301 0.94680 0.92725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.02 71.98 0.65 -1.61 16 2 C -0.09 -1.37 2.77 -10.80 -0.03 -1.40 16 3 C -0.15 -2.17 9.19 71.98 0.66 -1.51 16 4 C -0.14 -2.66 4.14 30.60 0.13 -2.53 16 5 C 0.09 1.84 1.41 44.92 0.06 1.90 16 6 H 0.08 1.69 4.88 -2.39 -0.01 1.67 16 7 C 0.07 1.24 4.33 86.30 0.37 1.62 16 8 N -0.51 -10.63 5.12 -883.03 -4.52 -15.15 16 9 C 0.04 0.78 5.13 86.65 0.44 1.22 16 10 C -0.12 -2.20 7.06 31.80 0.22 -1.98 16 11 C -0.13 -1.92 6.93 31.48 0.22 -1.71 16 12 C 0.03 0.55 6.69 86.45 0.58 1.13 16 13 N -0.67 -16.80 5.92 -491.56 -2.91 -19.71 16 14 C 0.08 2.39 4.94 86.30 0.43 2.81 16 15 C 0.02 0.83 2.42 -12.60 -0.03 0.80 16 16 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 17 C 0.25 10.43 13.07 89.44 1.17 11.60 16 18 N -0.51 -22.52 18.54 20.01 0.37 -22.15 16 19 C 0.04 1.89 4.42 29.85 0.13 2.02 16 20 C -0.54 -29.03 8.60 25.60 0.22 -28.81 16 21 H 0.05 2.80 7.59 -2.91 -0.02 2.77 16 22 C 0.01 0.73 5.46 84.66 0.46 1.19 16 23 N -0.92 -53.37 13.29 21.45 0.28 -53.09 16 24 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 0.86 6.41 -2.38 -0.02 0.85 16 31 H 0.08 1.09 6.38 -2.38 -0.02 1.08 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 1.16 7.47 -2.39 -0.02 1.14 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 0.77 6.33 -2.39 -0.02 0.76 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.73 7.76 -2.38 -0.02 1.71 16 40 H 0.04 0.76 8.00 -2.39 -0.02 0.74 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.07 0.94 8.14 -2.38 -0.02 0.93 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 0.70 7.57 -2.39 -0.02 0.68 16 46 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.33 9.03 7.71 -89.70 -0.69 8.34 16 48 H 0.10 2.62 7.92 -2.39 -0.02 2.60 16 49 H 0.03 0.82 7.51 -2.39 -0.02 0.80 16 50 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 51 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -61.27 405.28 1.12 -60.15 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.18 Total: 19.24 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.69 Total: -15.24 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -6.78 Total: -110.09 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -61.27 1.12 -60.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591769545.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.209 kcal (2) G-P(sol) polarization free energy of solvation -61.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds