Wall clock time and date at job start Fri Apr 10 2020 22:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47137 * 2 1 4 4 C 1.52992 * 109.47409 * 299.99523 * 3 2 1 5 5 C 1.53006 * 109.47527 * 59.99884 * 3 2 1 6 6 C 1.53009 * 109.46935 * 179.97438 * 3 2 1 7 7 C 1.53002 * 109.46716 * 299.99820 * 6 3 2 8 8 C 1.53001 * 109.46790 * 179.97438 * 7 6 3 9 9 C 1.53003 * 109.46944 * 60.00303 * 8 7 6 10 10 N 1.46903 * 109.47361 * 179.97438 * 9 8 7 11 11 C 1.46896 * 111.00286 * 206.51197 * 10 9 8 12 12 H 1.09002 * 109.41467 * 326.18990 * 11 10 9 13 13 C 1.52951 * 109.41642 * 85.98065 * 11 10 9 14 14 C 1.53226 * 109.40736 * 183.70768 * 13 11 10 15 15 C 1.51272 * 108.53480 * 305.37140 * 14 13 11 16 16 C 1.37876 * 120.84783 * 231.37415 * 15 14 13 17 17 N 1.31516 * 119.99654 * 179.97438 * 16 15 14 18 18 Si 1.86794 * 120.00350 * 359.97030 * 16 15 14 19 19 H 1.48502 * 109.46999 * 90.00381 * 18 16 15 20 20 H 1.48498 * 109.47567 * 210.00429 * 18 16 15 21 21 H 1.48507 * 109.47193 * 330.00580 * 18 16 15 22 22 C 1.51268 * 118.30058 * 51.34297 * 15 14 13 23 23 C 1.52959 * 109.41135 * 206.33428 * 11 10 9 24 24 C 1.53002 * 109.47302 * 299.99841 * 9 8 7 25 25 C 1.52995 * 109.46935 * 179.97438 * 6 3 2 26 26 H 1.09004 * 109.46583 * 59.99975 * 1 2 3 27 27 H 1.08996 * 109.47361 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47334 * 300.00687 * 1 2 3 29 29 H 1.09005 * 109.46300 * 119.99556 * 2 1 3 30 30 H 1.08991 * 109.47232 * 239.99448 * 2 1 3 31 31 H 1.09004 * 109.47443 * 60.00188 * 4 3 2 32 32 H 1.08996 * 109.47542 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.47199 * 300.00417 * 4 3 2 34 34 H 1.08995 * 109.47089 * 59.99485 * 5 3 2 35 35 H 1.08996 * 109.47043 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.46839 * 299.99861 * 5 3 2 37 37 H 1.08991 * 109.47075 * 59.99668 * 6 3 2 38 38 H 1.09000 * 109.47063 * 299.99783 * 7 6 3 39 39 H 1.09000 * 109.47311 * 60.00371 * 7 6 3 40 40 H 1.08993 * 109.47473 * 300.00704 * 8 7 6 41 41 H 1.08996 * 109.47205 * 179.97438 * 8 7 6 42 42 H 1.09000 * 109.47492 * 59.99647 * 9 8 7 43 43 H 1.00902 * 110.99639 * 330.46830 * 10 9 8 44 44 H 1.09011 * 109.48280 * 303.68604 * 13 11 10 45 45 H 1.09005 * 109.48366 * 63.72007 * 13 11 10 46 46 H 1.08995 * 109.62532 * 185.65829 * 14 13 11 47 47 H 1.09002 * 109.62920 * 65.08281 * 14 13 11 48 48 H 0.97007 * 119.99991 * 179.97438 * 17 16 15 49 49 H 1.08997 * 109.62671 * 188.93462 * 22 15 14 50 50 H 1.09006 * 109.77695 * 68.46344 * 22 15 14 51 51 H 1.08995 * 109.48253 * 296.27323 * 23 11 10 52 52 H 1.09006 * 109.48346 * 56.30350 * 23 11 10 53 53 H 1.09003 * 109.47188 * 300.00249 * 24 9 8 54 54 H 1.08996 * 109.47576 * 180.02562 * 24 9 8 55 55 H 1.09004 * 109.47405 * 299.99838 * 25 6 3 56 56 H 1.09000 * 109.47570 * 59.99773 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5302 2.1637 -1.2492 5 6 1.5301 2.1638 1.2492 6 6 3.5701 1.4424 0.0006 7 6 4.0795 0.7213 1.2503 8 6 5.6095 0.7207 1.2506 9 6 6.1200 2.1630 1.2503 10 7 7.5891 2.1625 1.2513 11 6 8.1156 3.3898 1.8632 12 1 7.4484 4.2219 1.6382 13 6 8.2024 3.2053 3.3791 14 6 8.6635 4.5155 4.0259 15 6 9.9603 4.9429 3.3748 16 6 11.0638 5.2598 4.1382 17 7 12.1831 5.6290 3.5545 18 14 10.9693 5.1650 6.0013 19 1 11.3604 3.8038 6.4481 20 1 11.8922 6.1652 6.5954 21 1 9.5800 5.4504 6.4416 22 6 10.0155 5.0131 1.8648 23 6 9.5053 3.6848 1.2963 24 6 5.6106 2.8842 0.0008 25 6 4.0801 2.8848 0.0000 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5139 -0.8898 31 1 0.4402 2.1638 -1.2493 32 1 1.8939 3.1912 -1.2495 33 1 1.8936 1.6498 -2.1392 34 1 1.8933 1.6500 2.1392 35 1 1.8938 3.1913 1.2494 36 1 0.4400 2.1639 1.2492 37 1 3.9338 0.9284 -0.8890 38 1 3.7158 1.2354 2.1400 39 1 3.7162 -0.3063 1.2503 40 1 5.9729 0.2066 0.3609 41 1 5.9724 0.2074 2.1410 42 1 5.7567 2.6773 2.1400 43 1 7.9500 1.3430 1.7162 44 1 7.2215 2.9329 3.7690 45 1 8.9172 2.4150 3.6088 46 1 8.8232 4.3607 5.0929 47 1 7.9066 5.2851 3.8741 48 1 12.9594 5.8523 4.0915 49 1 11.0438 5.1781 1.5433 50 1 9.3857 5.8291 1.5102 51 1 10.1893 2.8833 1.5753 52 1 9.4479 3.7521 0.2099 53 1 5.9740 2.3699 -0.8890 54 1 5.9747 3.9115 0.0003 55 1 3.7172 3.3982 -0.8905 56 1 3.7164 3.3993 0.8895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257402430.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:10 Heat of formation + Delta-G solvation = -68.882064 kcal Electronic energy + Delta-G solvation = -27099.942588 eV Core-core repulsion = 23812.616769 eV Total energy + Delta-G solvation = -3287.325820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 307.257 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92327 -39.30978 -37.32985 -35.01981 -33.22215 -31.95539 -31.45110 -31.00485 -29.37134 -28.15636 -27.42891 -25.23757 -23.96604 -23.20098 -22.91257 -22.28507 -21.00287 -20.59015 -18.97316 -18.12944 -16.80045 -16.42618 -16.18778 -15.94182 -15.76452 -15.43537 -15.02062 -14.96779 -14.72362 -14.66133 -14.18708 -14.09340 -13.97188 -13.79981 -13.40662 -13.23922 -13.08695 -12.94015 -12.79194 -12.72477 -12.63885 -12.56224 -12.39888 -12.21978 -12.13837 -11.90764 -11.85195 -11.73549 -11.60989 -11.43113 -11.37517 -11.29093 -11.04027 -10.83110 -10.73280 -10.58122 -10.55625 -10.51728 -9.13737 -8.16936 -6.10973 1.35990 1.38617 1.47740 2.39490 3.06996 3.30052 3.74048 3.82012 3.86908 4.02530 4.10841 4.14886 4.28095 4.39544 4.41931 4.46667 4.55484 4.58528 4.60719 4.63459 4.65784 4.72692 4.74093 4.75996 4.81524 4.93739 4.97231 5.01051 5.02131 5.06861 5.08467 5.12437 5.14533 5.17032 5.21427 5.21812 5.24801 5.28258 5.33708 5.36412 5.36856 5.38378 5.42604 5.45501 5.53705 5.56592 5.59103 5.63214 5.72022 5.76483 5.78811 5.85435 6.32816 6.36628 6.66180 6.95802 7.46517 8.94275 Molecular weight = 307.26amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.002745 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.319805 B =10199.676725 C =10486.140542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.055 4.055 4 C -0.145 4.145 5 C -0.147 4.147 6 C -0.069 4.069 7 C -0.108 4.108 8 C -0.114 4.114 9 C 0.090 3.910 10 N -0.687 5.687 11 C 0.115 3.885 12 H 0.055 0.945 13 C -0.125 4.125 14 C -0.015 4.015 15 C -0.496 4.496 16 C 0.018 3.982 17 N -0.933 5.933 18 Si 0.943 3.057 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.255 1.255 22 C 0.005 3.995 23 C -0.082 4.082 24 C -0.102 4.102 25 C -0.110 4.110 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.340 0.660 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.029 0.971 47 H 0.016 0.984 48 H 0.262 0.738 49 H 0.023 0.977 50 H -0.005 1.005 51 H 0.035 0.965 52 H 0.042 0.958 53 H 0.060 0.940 54 H 0.039 0.961 55 H 0.068 0.932 56 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.754 -12.240 -6.606 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.055 4.055 4 C -0.202 4.202 5 C -0.204 4.204 6 C -0.087 4.087 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.020 4.020 10 N -0.316 5.316 11 C 0.006 3.994 12 H 0.073 0.927 13 C -0.164 4.164 14 C -0.053 4.053 15 C -0.516 4.516 16 C -0.180 4.180 17 N -0.573 5.573 18 Si 0.769 3.231 19 H -0.199 1.199 20 H -0.218 1.218 21 H -0.179 1.179 22 C -0.032 4.032 23 C -0.120 4.120 24 C -0.140 4.140 25 C -0.147 4.147 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.048 0.952 43 H 0.158 0.842 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.048 0.952 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.041 0.959 50 H 0.013 0.987 51 H 0.053 0.947 52 H 0.061 0.939 53 H 0.079 0.921 54 H 0.058 0.942 55 H 0.087 0.913 56 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.532 -11.957 -7.232 27.368 hybrid contribution 0.712 0.317 1.818 1.979 sum -22.819 -11.639 -5.413 26.182 Atomic orbital electron populations 1.21889 0.95679 1.01580 1.02062 1.21608 0.96086 0.95480 1.01933 1.20498 0.93782 0.95549 0.95641 1.21971 1.01172 1.00171 0.96877 1.22032 1.01041 1.00099 0.97249 1.21114 0.94254 0.95253 0.98101 1.21626 0.93725 1.01051 0.98186 1.21668 0.96674 0.94709 1.02114 1.21533 0.86781 0.96824 0.96838 1.60700 1.07574 1.04229 1.59145 1.21167 0.95306 0.91575 0.91393 0.92680 1.22114 0.98761 0.98647 0.96893 1.19714 0.95462 0.94245 0.95863 1.20645 0.95751 1.42723 0.92458 1.25655 0.94875 0.95018 1.02465 1.69990 1.02796 1.47497 1.37019 0.85776 0.78200 0.77948 0.81183 1.19874 1.21846 1.17904 1.19357 0.96163 0.92894 0.94837 1.21373 0.95353 0.97830 0.97449 1.21484 0.95650 0.99170 0.97718 1.21658 0.93874 0.97220 1.01982 0.92401 0.92767 0.92485 0.91759 0.92202 0.91994 0.92802 0.92801 0.92623 0.93062 0.92094 0.91500 0.92010 0.90569 0.91364 0.92096 0.95186 0.84197 0.93024 0.93426 0.95233 0.96607 0.92873 0.95856 0.98695 0.94662 0.93897 0.92089 0.94227 0.91295 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.21 71.98 0.66 -1.04 16 2 C -0.11 -1.40 4.64 30.59 0.14 -1.26 16 3 C -0.05 -0.75 0.35 -52.18 -0.02 -0.77 16 4 C -0.14 -1.92 7.77 71.98 0.56 -1.36 16 5 C -0.15 -2.09 7.42 71.98 0.53 -1.56 16 6 C -0.07 -1.12 1.55 -10.79 -0.02 -1.14 16 7 C -0.11 -1.81 4.50 30.60 0.14 -1.67 16 8 C -0.11 -2.32 5.18 30.60 0.16 -2.16 16 9 C 0.09 2.32 2.28 44.92 0.10 2.42 16 10 N -0.69 -21.29 6.06 -469.61 -2.85 -24.13 16 11 C 0.12 4.37 2.17 44.89 0.10 4.47 16 12 H 0.05 2.20 7.22 -2.39 -0.02 2.18 16 13 C -0.12 -4.88 5.17 30.65 0.16 -4.72 16 14 C -0.01 -0.68 5.59 30.11 0.17 -0.51 16 15 C -0.50 -26.80 5.51 -16.17 -0.09 -26.89 16 16 C 0.02 0.99 5.46 84.65 0.46 1.45 16 17 N -0.93 -56.18 12.73 21.45 0.27 -55.91 16 18 Si 0.94 44.03 27.27 68.60 1.87 45.90 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 21 H -0.25 -11.22 6.46 99.48 0.64 -10.57 16 22 C 0.01 0.29 5.97 30.11 0.18 0.47 16 23 C -0.08 -3.60 5.54 30.66 0.17 -3.43 16 24 C -0.10 -2.54 5.43 30.61 0.17 -2.37 16 25 C -0.11 -2.13 4.50 30.61 0.14 -2.00 16 26 H 0.06 0.61 6.43 -2.38 -0.02 0.60 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.62 6.43 -2.39 -0.02 0.61 16 29 H 0.06 0.80 6.43 -2.38 -0.02 0.79 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.74 6.43 -2.38 -0.02 0.72 16 32 H 0.05 0.76 6.43 -2.39 -0.02 0.75 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.81 6.43 -2.39 -0.02 0.79 16 35 H 0.05 0.80 6.43 -2.39 -0.02 0.79 16 36 H 0.06 0.77 6.43 -2.39 -0.02 0.76 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.09 6.43 -2.39 -0.02 1.07 16 39 H 0.08 1.10 6.43 -2.39 -0.02 1.09 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.21 8.12 -2.39 -0.02 1.20 16 42 H 0.03 0.86 7.17 -2.39 -0.02 0.84 16 43 H 0.34 9.99 8.06 -89.69 -0.72 9.27 16 44 H 0.05 1.77 7.48 -2.38 -0.02 1.75 16 45 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.03 1.33 4.78 -2.39 -0.01 1.32 16 47 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 48 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 49 H 0.02 1.34 7.07 -2.39 -0.02 1.33 16 50 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 51 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 53 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 54 H 0.04 1.14 7.55 -2.39 -0.02 1.12 16 55 H 0.07 1.26 6.43 -2.38 -0.02 1.25 16 56 H 0.06 1.21 6.43 -2.39 -0.02 1.19 16 Total: -1.00 -59.19 387.44 3.06 -56.13 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.05 Total: 20.08 kcal Atomic # 6 Polarization: -45.79 SS G_CDS: 3.71 Total: -42.08 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -2.57 Total: -80.04 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.87 Total: 45.90 kcal Total: -59.19 3.06 -56.13 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257402430.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.748 kcal (2) G-P(sol) polarization free energy of solvation -59.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds