Wall clock time and date at job start Fri Apr 10 2020 22:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 115.55248 * 2 1 4 4 O 1.45202 * 109.47139 * 34.32337 * 3 2 1 5 5 C 1.34229 * 116.99840 * 180.02562 * 4 3 2 6 6 O 1.20824 * 119.99982 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99830 * 180.02562 * 5 4 3 8 8 S 1.80999 * 109.46781 * 179.97438 * 7 5 4 9 9 C 1.76208 * 99.99712 * 179.97438 * 8 7 5 10 10 H 1.08000 * 120.00013 * 0.02562 * 9 8 7 11 11 C 1.38795 * 119.99740 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99796 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00451 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47217 * 89.99569 * 13 11 9 15 15 H 1.48499 * 109.47368 * 209.99964 * 13 11 9 16 16 H 1.48498 * 109.47120 * 329.99832 * 13 11 9 17 17 C 1.53079 * 117.51064 * 145.71360 * 2 1 3 18 18 C 1.53000 * 117.50082 * 214.32052 * 2 1 3 19 19 H 1.09002 * 117.49422 * 0.02562 * 18 2 1 20 20 Br 1.96601 * 117.49936 * 145.00109 * 18 2 1 21 21 H 1.08999 * 109.47478 * 205.67094 * 1 2 3 22 22 H 1.09003 * 109.46827 * 325.67648 * 1 2 3 23 23 H 1.09008 * 109.46528 * 85.67072 * 1 2 3 24 24 H 1.09005 * 109.47208 * 154.32595 * 3 2 1 25 25 H 1.08997 * 109.47057 * 274.32341 * 3 2 1 26 26 H 1.09002 * 109.46978 * 299.99888 * 7 5 4 27 27 H 1.08997 * 109.47142 * 59.99753 * 7 5 4 28 28 H 0.97001 * 120.00168 * 180.02562 * 12 11 9 29 29 H 1.09008 * 117.49243 * 359.97438 * 17 2 1 30 30 H 1.08994 * 117.51453 * 214.95614 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 8 1.3787 2.3047 0.7719 5 6 1.8214 3.5680 0.8706 6 8 2.8524 3.8909 0.3296 7 6 1.0326 4.5836 1.6563 8 16 1.8828 6.1806 1.6027 9 6 0.7745 7.1499 2.5707 10 1 -0.1148 6.6996 2.9864 11 6 1.0449 8.4918 2.7998 12 7 0.2167 9.2160 3.5226 13 14 2.5833 9.2706 2.0814 14 1 2.2786 9.8178 0.7350 15 1 3.0434 10.3683 2.9694 16 1 3.6510 8.2447 1.9687 17 6 2.2371 -1.1218 0.7648 18 6 2.2365 -1.1208 -0.7652 19 1 1.6112 -1.8580 -1.2689 20 35 3.9228 -0.6771 -1.6733 21 1 -0.3634 -0.9262 0.4452 22 1 -0.3633 0.8487 0.5795 23 1 -0.3633 0.0776 -1.0248 24 1 3.1823 1.3087 0.4453 25 1 2.2768 1.7415 -1.0247 26 1 0.0381 4.6863 1.2220 27 1 0.9447 4.2537 2.6914 28 1 0.4055 10.1540 3.6824 29 1 1.6119 -1.8593 1.2682 30 1 3.1724 -0.8764 1.2679 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344033753.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:24 Heat of formation + Delta-G solvation = -82.902424 kcal Electronic energy + Delta-G solvation = -15110.071949 eV Core-core repulsion = 12271.146362 eV Total energy + Delta-G solvation = -2838.925587 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 307.987 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.60809 -39.38726 -37.30522 -34.69122 -31.81329 -31.31974 -29.32318 -28.17756 -27.81282 -23.14537 -22.56980 -20.40353 -19.92093 -18.72680 -17.76591 -17.43474 -17.08499 -16.23443 -15.86406 -15.54413 -15.15048 -14.91880 -14.14304 -14.03319 -13.66036 -13.40415 -13.32289 -13.03085 -12.79695 -12.65204 -12.42482 -12.30123 -11.95621 -11.89675 -11.65844 -11.35273 -11.18486 -10.66656 -10.62412 -10.53318 -9.06852 -8.52754 -6.26277 0.59701 0.75609 1.06488 1.31707 1.34011 1.49105 1.77520 2.23346 2.37755 2.64693 2.85619 3.31927 3.48082 3.51071 3.84076 3.90592 4.10996 4.26912 4.29574 4.40874 4.58992 4.77605 4.89479 4.94281 4.99046 5.20851 5.40026 5.69737 6.11506 6.61222 6.91540 8.59568 Molecular weight = 307.99amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.003098 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.161251 B = 9035.257770 C = 9706.694837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.116 4.116 3 C 0.097 3.903 4 O -0.340 6.340 5 C 0.489 3.511 6 O -0.519 6.519 7 C -0.088 4.088 8 S -0.165 6.165 9 C -0.531 4.531 10 H 0.067 0.933 11 C 0.049 3.951 12 N -0.915 5.915 13 Si 0.912 3.088 14 H -0.261 1.261 15 H -0.258 1.258 16 H -0.235 1.235 17 C -0.135 4.135 18 C -0.106 4.106 19 H 0.168 0.832 20 Br -0.141 7.141 21 H 0.086 0.914 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.127 0.873 27 H 0.127 0.873 28 H 0.278 0.722 29 H 0.141 0.859 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.106 -26.255 -9.072 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.117 4.117 3 C 0.023 3.977 4 O -0.256 6.256 5 C 0.331 3.669 6 O -0.407 6.407 7 C -0.236 4.236 8 S 0.061 5.939 9 C -0.678 4.678 10 H 0.085 0.915 11 C -0.157 4.157 12 N -0.552 5.552 13 Si 0.734 3.266 14 H -0.186 1.186 15 H -0.183 1.183 16 H -0.159 1.159 17 C -0.173 4.173 18 C -0.201 4.201 19 H 0.186 0.814 20 Br -0.059 7.059 21 H 0.105 0.895 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.088 0.912 29 H 0.159 0.841 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.922 -25.590 -9.999 27.911 hybrid contribution -0.936 0.413 0.593 1.183 sum 3.986 -25.177 -9.405 27.170 Atomic orbital electron populations 1.21359 0.88723 1.03938 1.03108 1.21633 0.97350 0.87975 1.04759 1.22670 0.93031 0.86583 0.95444 1.86436 1.52088 1.19505 1.67608 1.22910 0.83731 0.82237 0.78031 1.90676 1.24985 1.80093 1.44937 1.22931 1.02835 0.93580 1.04277 1.84696 1.35080 1.04107 1.69984 1.22409 1.10327 0.98025 1.37074 0.91525 1.25528 0.99535 0.96533 0.94131 1.70009 1.38004 1.08867 1.38345 0.85901 0.80782 0.80411 0.79501 1.18593 1.18270 1.15920 1.23794 1.03039 0.99856 0.90579 1.26010 0.93001 1.04077 0.97029 0.81427 1.97428 1.33349 1.94779 1.80377 0.89536 0.91404 0.91273 0.91047 0.91018 0.85480 0.85460 0.91240 0.84069 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.75 71.98 0.70 -0.82 16 2 C -0.12 -1.83 2.59 -52.15 -0.14 -1.96 16 3 C 0.10 2.29 4.49 71.98 0.32 2.61 16 4 O -0.34 -9.47 8.79 -51.41 -0.45 -9.92 16 5 C 0.49 17.05 7.97 71.24 0.57 17.62 16 6 O -0.52 -21.30 15.61 21.97 0.34 -20.95 16 7 C -0.09 -3.28 6.27 71.24 0.45 -2.83 16 8 S -0.17 -8.08 18.55 -56.49 -1.05 -9.13 16 9 C -0.53 -30.17 10.04 67.95 0.68 -29.49 16 10 H 0.07 3.99 8.03 -2.91 -0.02 3.97 16 11 C 0.05 2.79 5.50 84.86 0.47 3.26 16 12 N -0.91 -54.78 13.97 21.65 0.30 -54.48 16 13 Si 0.91 43.83 27.74 68.60 1.90 45.73 16 14 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.24 -11.22 6.74 99.48 0.67 -10.55 16 17 C -0.14 -1.57 9.64 30.62 0.30 -1.27 16 18 C -0.11 -1.35 6.69 30.59 0.20 -1.15 16 19 H 0.17 1.35 8.14 -2.39 -0.02 1.33 16 20 Br -0.14 -2.59 33.01 -20.37 -0.67 -3.27 16 21 H 0.09 0.74 7.90 -2.39 -0.02 0.73 16 22 H 0.07 1.15 6.87 -2.39 -0.02 1.14 16 23 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.07 1.78 7.85 -2.38 -0.02 1.77 16 25 H 0.07 1.83 8.09 -2.39 -0.02 1.82 16 26 H 0.13 4.34 8.14 -2.39 -0.02 4.32 16 27 H 0.13 4.35 8.14 -2.40 -0.02 4.33 16 28 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.14 0.91 8.05 -2.38 -0.02 0.90 16 30 H 0.10 1.38 8.05 -2.39 -0.02 1.36 16 Total: -1.00 -67.04 297.28 5.03 -62.01 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 1.10 Total: 4.03 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 3.55 Total: -14.03 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.30 Total: -54.48 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.11 Total: -30.87 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.90 Total: 45.73 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.05 Total: -9.13 kcal Atomic # 35 Polarization: -2.59 SS G_CDS: -0.67 Total: -3.27 kcal Total: -67.04 5.03 -62.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344033753.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.890 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds