Wall clock time and date at job start Fri Apr 10 2020 22:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86796 * 120.00172 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00121 * 3 2 1 5 5 H 1.48502 * 109.47218 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47010 * 120.00004 * 3 2 1 7 7 C 1.38640 * 119.99526 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99832 * 180.02562 * 7 2 1 9 9 O 1.34805 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.35776 * 117.00020 * 174.95541 * 9 7 2 11 11 C 1.38742 * 120.08450 * 5.42479 * 10 9 7 12 12 C 1.38344 * 119.97570 * 179.97438 * 11 10 9 13 13 F 1.35095 * 119.92158 * 179.97438 * 12 11 10 14 14 C 1.38559 * 120.15709 * 359.97438 * 12 11 10 15 15 C 1.38183 * 120.17618 * 359.72530 * 14 12 11 16 16 C 1.38718 * 120.02286 * 0.55365 * 15 14 12 17 17 N 1.40011 * 120.08382 * 179.72154 * 16 15 14 18 18 C 1.34782 * 119.99764 * 34.60608 * 17 16 15 19 19 O 1.21590 * 120.00140 * 355.62259 * 18 17 16 20 20 C 1.47661 * 119.99617 * 175.62198 * 18 17 16 21 21 C 1.39501 * 122.10443 * 179.97438 * 20 18 17 22 22 C 1.34989 * 111.68541 * 179.71419 * 21 20 18 23 23 S 1.71763 * 105.45469 * 0.26807 * 22 21 20 24 24 N 1.30614 * 122.10982 * 0.24064 * 20 18 17 25 25 H 0.97002 * 119.99576 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.01656 * 359.96254 * 11 10 9 27 27 H 1.08001 * 119.91193 * 180.02562 * 14 12 11 28 28 H 1.08001 * 119.98921 * 180.29167 * 15 14 12 29 29 H 0.97001 * 120.00296 * 214.61300 * 17 16 15 30 30 H 1.08000 * 124.15267 * 359.97438 * 21 20 18 31 31 H 1.08004 * 127.27763 * 180.28972 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7464 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0701 -3.5045 -0.1075 11 6 3.4560 -3.4397 -0.0971 12 6 4.2030 -4.5990 -0.2057 13 9 5.5524 -4.5346 -0.1960 14 6 3.5705 -5.8261 -0.3243 15 6 2.1906 -5.8987 -0.3290 16 6 1.4343 -4.7403 -0.2265 17 7 0.0360 -4.8119 -0.2370 18 6 -0.5893 -5.8616 0.3318 19 8 0.0606 -6.7847 0.7834 20 6 -2.0638 -5.8906 0.4066 21 6 -2.7560 -6.9547 0.9850 22 6 -4.0914 -6.7610 0.9461 23 16 -4.3116 -5.2455 0.1683 24 7 -2.8022 -4.9239 -0.0691 25 1 -0.4849 0.8401 0.0004 26 1 3.9514 -2.4846 -0.0046 27 1 4.1575 -6.7287 -0.4083 28 1 1.7007 -6.8572 -0.4169 29 1 -0.4826 -4.1060 -0.6538 30 1 -2.2816 -7.8244 1.4151 31 1 -4.8592 -7.4197 1.3244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433442560.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:41 Heat of formation + Delta-G solvation = -49.526596 kcal Electronic energy + Delta-G solvation = -21959.247215 eV Core-core repulsion = 18247.461894 eV Total energy + Delta-G solvation = -3711.785321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 308.042 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.86600 -41.95717 -40.77282 -39.43700 -37.98503 -35.72830 -34.35048 -32.58012 -31.20278 -30.25436 -27.67807 -27.22869 -24.33484 -23.51893 -22.35465 -21.17630 -20.19712 -19.62381 -19.32083 -18.79188 -18.10063 -17.15395 -16.99524 -16.66325 -16.48757 -16.04200 -15.96409 -15.51829 -15.34385 -15.13258 -14.93858 -14.58148 -14.25550 -14.05908 -13.81474 -13.47530 -13.05928 -12.60788 -12.42108 -12.22485 -12.18775 -12.14990 -11.69076 -11.29644 -10.98912 -10.86609 -10.84935 -9.84525 -9.60835 -8.85226 -8.52763 -6.20959 -0.48405 0.12592 0.41558 0.54120 0.76541 0.80569 1.34927 1.44328 1.49864 1.94134 2.07892 2.14008 2.62453 3.01910 3.12499 3.40441 3.57707 3.82307 3.91054 4.13712 4.30147 4.43374 4.53601 4.56800 4.86360 4.87964 4.96233 5.17381 5.21829 5.27497 5.31745 5.48104 5.89601 5.97316 6.31839 6.88591 6.91469 7.58630 8.67249 Molecular weight = 308.04amu Principal moments of inertia in cm(-1) A = 0.011118 B = 0.005121 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.723773 B = 5466.380853 C = 7885.507265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.010 4.010 3 Si 1.015 2.985 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.420 4.420 8 H 0.102 0.898 9 O -0.203 6.203 10 C 0.133 3.867 11 C -0.264 4.264 12 C 0.130 3.870 13 F -0.142 7.142 14 C -0.203 4.203 15 C -0.047 4.047 16 C 0.048 3.952 17 N -0.637 5.637 18 C 0.584 3.416 19 O -0.543 6.543 20 C 0.025 3.975 21 C -0.149 4.149 22 C -0.259 4.259 23 S 0.532 5.468 24 N -0.563 5.563 25 H 0.275 0.725 26 H 0.139 0.861 27 H 0.164 0.836 28 H 0.157 0.843 29 H 0.418 0.582 30 H 0.181 0.819 31 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.111 -11.564 -0.037 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.210 4.210 3 Si 0.834 3.166 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.496 4.496 8 H 0.119 0.881 9 O -0.108 6.108 10 C 0.079 3.921 11 C -0.285 4.285 12 C 0.110 3.890 13 F -0.120 7.120 14 C -0.222 4.222 15 C -0.067 4.067 16 C -0.046 4.046 17 N -0.280 5.280 18 C 0.369 3.631 19 O -0.421 6.421 20 C -0.147 4.147 21 C -0.181 4.181 22 C -0.408 4.408 23 S 0.687 5.313 24 N -0.400 5.400 25 H 0.084 0.916 26 H 0.156 0.844 27 H 0.181 0.819 28 H 0.174 0.826 29 H 0.254 0.746 30 H 0.198 0.802 31 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -8.945 -10.270 -0.552 13.630 hybrid contribution 1.573 -0.009 0.574 1.674 sum -7.372 -10.279 0.022 12.649 Atomic orbital electron populations 1.70160 1.07725 1.29104 1.47127 1.26488 0.96838 1.02354 0.95344 0.84694 0.77509 0.74485 0.79886 1.18211 1.19421 1.18448 1.21771 0.92612 0.81057 1.54117 0.88074 1.83941 1.34922 1.12009 1.79958 1.19219 0.90343 0.87344 0.95216 1.20927 0.93059 0.99320 1.15201 1.17452 0.76285 0.94146 1.01116 1.91436 1.29302 1.97340 1.93951 1.20901 0.94303 0.96641 1.10396 1.20885 0.92687 0.96966 0.96131 1.17233 0.82925 0.91838 1.12630 1.43050 1.04859 1.24647 1.55408 1.17735 0.86307 0.81935 0.77133 1.90704 1.66234 1.36410 1.48715 1.20994 0.94362 0.93715 1.05665 1.21469 0.93724 1.00278 1.02600 1.27683 1.00232 1.06143 1.06759 1.80230 1.01824 1.08234 1.41019 1.72050 1.10258 1.31290 1.26433 0.91583 0.84389 0.81888 0.82593 0.74567 0.80224 0.75208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.80 13.67 21.61 0.30 -52.50 16 2 C -0.01 -0.57 5.49 84.83 0.47 -0.10 16 3 Si 1.02 41.57 29.55 68.60 2.03 43.59 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.42 -23.54 9.49 67.92 0.64 -22.89 16 8 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 9 O -0.20 -11.59 9.32 -22.77 -0.21 -11.81 16 10 C 0.13 6.53 6.67 22.69 0.15 6.68 16 11 C -0.26 -11.86 9.14 22.42 0.20 -11.66 16 12 C 0.13 5.05 7.29 22.37 0.16 5.21 16 13 F -0.14 -5.13 17.26 44.97 0.78 -4.36 16 14 C -0.20 -7.05 10.02 22.33 0.22 -6.83 16 15 C -0.05 -1.77 8.69 22.37 0.19 -1.57 16 16 C 0.05 2.13 6.33 38.25 0.24 2.37 16 17 N -0.64 -26.85 5.18 -305.78 -1.58 -28.43 16 18 C 0.58 22.32 7.66 86.73 0.66 22.98 16 19 O -0.54 -21.42 14.07 -4.00 -0.06 -21.48 16 20 C 0.02 0.79 6.66 42.12 0.28 1.07 16 21 C -0.15 -3.43 9.98 21.83 0.22 -3.21 16 22 C -0.26 -3.93 11.40 67.07 0.76 -3.17 16 23 S 0.53 10.18 23.20 -56.49 -1.31 8.87 16 24 N -0.56 -17.58 10.71 -75.29 -0.81 -18.38 16 25 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 26 H 0.14 6.23 5.64 -2.91 -0.02 6.22 16 27 H 0.16 4.44 8.06 -2.91 -0.02 4.42 16 28 H 0.16 5.53 6.19 -2.91 -0.02 5.51 16 29 H 0.42 18.43 8.04 -92.71 -0.75 17.68 16 30 H 0.18 3.73 7.99 -2.91 -0.02 3.71 16 31 H 0.23 1.31 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -70.00 300.59 3.83 -66.17 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.48 Total: 29.44 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 4.22 Total: -11.11 kcal Atomic # 7 Polarization: -97.22 SS G_CDS: -2.10 Total: -99.31 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.27 Total: -33.29 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.78 Total: -4.36 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 10.18 SS G_CDS: -1.31 Total: 8.87 kcal Total: -70.00 3.83 -66.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433442560.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.642 kcal (2) G-P(sol) polarization free energy of solvation -70.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds