Wall clock time and date at job start Fri Apr 10 2020 22:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47266 * 2 1 4 4 C 1.53000 * 109.47298 * 120.00251 * 2 1 3 5 5 C 1.53001 * 109.47056 * 240.00333 * 2 1 3 6 6 C 1.53006 * 109.47058 * 180.02562 * 5 2 1 7 7 C 1.53001 * 109.47058 * 180.02562 * 6 5 2 8 8 C 1.53000 * 109.47134 * 59.99804 * 7 6 5 9 9 C 1.53001 * 109.47134 * 180.02562 * 8 7 6 10 10 N 1.46894 * 109.47478 * 181.95274 * 9 8 7 11 11 C 1.46855 * 110.99623 * 52.00974 * 10 9 8 12 12 C 1.53040 * 109.51822 * 185.84043 * 11 10 9 13 13 C 1.53109 * 109.28202 * 300.81902 * 12 11 10 14 14 C 1.50700 * 109.52710 * 177.56128 * 13 12 11 15 15 H 1.07994 * 120.00365 * 240.31961 * 14 13 12 16 16 C 1.37878 * 119.99654 * 60.31824 * 14 13 12 17 17 N 1.31519 * 120.00017 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00115 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47132 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47536 * 119.99861 * 18 16 14 21 21 H 1.48501 * 109.47190 * 240.00342 * 18 16 14 22 22 C 1.53126 * 109.16177 * 57.65792 * 13 12 11 23 23 C 1.46842 * 111.00308 * 176.21789 * 10 9 8 24 24 C 1.52996 * 109.47298 * 300.00034 * 8 7 6 25 25 C 1.52996 * 109.47316 * 60.00134 * 5 2 1 26 26 H 1.09002 * 109.47051 * 59.99594 * 1 2 3 27 27 H 1.09004 * 109.46990 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47351 * 299.99694 * 1 2 3 29 29 H 1.09005 * 109.46534 * 60.00172 * 3 2 1 30 30 H 1.09001 * 109.47512 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47417 * 300.00182 * 3 2 1 32 32 H 1.09004 * 109.46966 * 60.00149 * 4 2 1 33 33 H 1.09001 * 109.47300 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.46964 * 300.00291 * 4 2 1 35 35 H 1.09004 * 109.47288 * 299.99899 * 5 2 1 36 36 H 1.08995 * 109.47138 * 300.00079 * 6 5 2 37 37 H 1.09002 * 109.47061 * 60.00065 * 6 5 2 38 38 H 1.09004 * 109.47288 * 299.99886 * 7 6 5 39 39 H 1.09001 * 109.47337 * 180.02562 * 7 6 5 40 40 H 1.08995 * 109.46884 * 60.00030 * 8 7 6 41 41 H 1.09002 * 109.47204 * 301.95618 * 9 8 7 42 42 H 1.09003 * 109.47295 * 61.95206 * 9 8 7 43 43 H 1.08999 * 109.46115 * 305.85529 * 11 10 9 44 44 H 1.08995 * 109.46063 * 65.82785 * 11 10 9 45 45 H 1.09002 * 109.49605 * 180.88226 * 12 11 10 46 46 H 1.08992 * 109.50719 * 60.76852 * 12 11 10 47 47 H 1.09001 * 109.52548 * 297.75807 * 13 12 11 48 48 H 0.97004 * 119.99808 * 180.02562 * 17 16 14 49 49 H 1.08998 * 109.50741 * 182.40539 * 22 13 12 50 50 H 1.09003 * 109.52882 * 62.30586 * 22 13 12 51 51 H 1.09001 * 109.46846 * 294.17842 * 23 10 9 52 52 H 1.09000 * 109.46004 * 54.16388 * 23 10 9 53 53 H 1.09004 * 109.46990 * 299.99836 * 24 8 7 54 54 H 1.08997 * 109.47155 * 180.02562 * 24 8 7 55 55 H 1.09001 * 109.46685 * 299.99795 * 25 5 2 56 56 H 1.08995 * 109.47052 * 59.99816 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0399 -0.7212 -1.2493 6 6 3.5700 -0.7217 -1.2490 7 6 4.0800 -1.4424 -2.4986 8 6 3.5705 -0.7201 -3.7475 9 6 4.0799 -1.4411 -4.9971 10 7 3.6297 -0.7211 -6.1957 11 6 3.9784 0.7032 -6.1159 12 6 3.3694 1.4462 -7.3072 13 6 3.9060 0.8423 -8.6078 14 6 3.2642 1.5302 -9.7850 15 1 2.6765 0.9600 -10.4891 16 6 3.4275 2.8876 -9.9632 17 7 4.1437 3.5820 -9.1061 18 14 2.6314 3.7406 -11.4220 19 1 1.8840 2.7441 -12.2306 20 1 1.6945 4.7844 -10.9344 21 1 3.6822 4.3713 -12.2606 22 6 3.5719 -0.6516 -8.6436 23 6 4.1750 -1.3339 -7.4136 24 6 2.0405 -0.7196 -3.7478 25 6 1.5300 0.0001 -2.4985 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6766 1.9562 0.8901 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 -1.7490 1.2491 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -0.2075 2.1392 35 1 1.6766 -1.7489 -1.2494 36 1 3.9337 0.3057 -1.2487 37 1 3.9330 -1.2359 -0.3590 38 1 3.7163 -2.4699 -2.4993 39 1 5.1700 -1.4432 -2.4982 40 1 3.9342 0.3073 -3.7467 41 1 5.1694 -1.4724 -4.9798 42 1 3.6876 -2.4579 -5.0153 43 1 3.5873 1.1215 -5.1885 44 1 5.0627 0.8132 -6.1351 45 1 3.6415 2.5005 -7.2561 46 1 2.2842 1.3483 -7.2810 47 1 4.9871 0.9748 -8.6521 48 1 4.2582 4.5370 -9.2312 49 1 3.9886 -1.0962 -9.5474 50 1 2.4898 -0.7832 -8.6389 51 1 5.2584 -1.2143 -7.4267 52 1 3.9265 -2.3950 -7.4288 53 1 1.6768 -1.7472 -3.7485 54 1 1.6776 -0.2055 -4.6377 55 1 0.4400 0.0001 -2.4985 56 1 1.8933 1.0277 -2.4984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473374845.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:31 Heat of formation + Delta-G solvation = -58.575205 kcal Electronic energy + Delta-G solvation = -27235.414202 eV Core-core repulsion = 23948.535321 eV Total energy + Delta-G solvation = -3286.878881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 307.257 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91429 -39.67847 -37.17065 -35.36850 -33.29908 -31.79825 -31.45547 -30.75863 -28.15301 -28.03371 -27.85372 -25.69550 -23.97961 -23.52695 -23.08264 -21.97396 -20.63350 -20.14205 -19.15233 -18.44255 -16.91476 -16.51705 -16.32853 -15.93993 -15.58703 -15.24097 -14.97990 -14.89191 -14.81485 -14.76971 -14.46636 -14.24724 -14.10027 -13.57932 -13.35891 -13.14580 -13.03976 -13.00285 -12.85656 -12.64269 -12.54438 -12.51546 -12.40164 -12.28229 -12.01320 -11.96079 -11.88935 -11.85142 -11.64966 -11.46886 -11.45130 -11.24702 -11.03079 -10.79327 -10.66724 -10.58838 -10.52552 -10.35335 -9.09802 -8.07692 -6.20991 1.39265 1.41062 1.52570 2.43648 3.09128 3.19141 3.70059 3.82962 3.88743 3.99332 4.13045 4.17830 4.27237 4.33120 4.36539 4.46705 4.52006 4.53810 4.59125 4.63730 4.71887 4.72796 4.76576 4.79226 4.82153 4.86401 4.90458 4.93841 4.95781 4.99105 5.00602 5.06619 5.10440 5.14588 5.15381 5.18232 5.24844 5.25313 5.30691 5.36112 5.36659 5.37864 5.44527 5.53187 5.57632 5.58766 5.61883 5.64533 5.72884 5.78165 6.01513 6.05301 6.34135 6.40297 6.42068 6.90789 7.46589 8.96960 Molecular weight = 307.26amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.003001 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.134180 B = 9327.870797 C =10111.235398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.140 4.140 5 C -0.067 4.067 6 C -0.112 4.112 7 C -0.107 4.107 8 C -0.082 4.082 9 C 0.061 3.939 10 N -0.535 5.535 11 C 0.070 3.930 12 C -0.092 4.092 13 C 0.044 3.956 14 C -0.531 4.531 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.953 3.047 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.281 1.281 22 C -0.099 4.099 23 C 0.066 3.934 24 C -0.099 4.099 25 C -0.114 4.114 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.024 0.976 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.005 0.995 45 H 0.058 0.942 46 H 0.029 0.971 47 H -0.015 1.015 48 H 0.259 0.741 49 H 0.051 0.949 50 H 0.051 0.949 51 H 0.017 0.983 52 H 0.086 0.914 53 H 0.060 0.940 54 H 0.048 0.952 55 H 0.062 0.938 56 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 -10.562 21.074 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.197 4.197 5 C -0.086 4.086 6 C -0.149 4.149 7 C -0.145 4.145 8 C -0.101 4.101 9 C -0.067 4.067 10 N -0.260 5.260 11 C -0.058 4.058 12 C -0.131 4.131 13 C 0.025 3.975 14 C -0.569 4.569 15 H 0.068 0.932 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.779 3.221 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.137 4.137 23 C -0.062 4.062 24 C -0.137 4.137 25 C -0.151 4.151 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.024 0.976 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.003 0.997 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.035 0.965 52 H 0.104 0.896 53 H 0.079 0.921 54 H 0.067 0.933 55 H 0.081 0.919 56 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.793 -10.430 21.076 23.819 hybrid contribution 0.709 1.048 -1.172 1.724 sum -3.084 -9.382 19.904 22.220 Atomic orbital electron populations 1.21920 0.94715 1.01784 1.01601 1.20530 0.95452 0.95316 0.95052 1.21984 1.01136 0.95786 1.01381 1.21900 1.01273 1.00104 0.96447 1.21107 0.95163 0.99017 0.93280 1.21653 0.95218 1.00557 0.97458 1.21509 1.00029 0.99510 0.93438 1.21204 0.96375 0.98969 0.93519 1.22227 0.96895 0.98209 0.89360 1.61983 1.59670 1.02125 1.02187 1.22061 0.96052 0.88671 0.99017 1.21389 0.97695 0.99823 0.94184 1.18659 0.93650 0.91687 0.93455 1.21610 1.31704 0.93626 1.09986 0.93172 1.25753 0.95807 0.98304 0.98875 1.70035 1.40987 1.07426 1.37300 0.85582 0.78337 0.78475 0.79716 1.19226 1.20580 1.20660 1.21535 0.99894 0.96321 0.95914 1.22029 0.95596 0.98550 0.90000 1.21363 0.94361 1.00529 0.97414 1.21669 1.00181 0.99081 0.94198 0.92973 0.92507 0.92525 0.92622 0.92490 0.93268 0.92487 0.92192 0.92606 0.91252 0.92472 0.90679 0.91274 0.92131 0.92582 0.95790 0.89933 0.90589 0.97632 0.92370 0.95212 0.99701 0.93149 0.93014 0.93036 0.96498 0.89558 0.92110 0.93318 0.91941 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.12 71.98 0.58 -1.55 16 2 C -0.06 -0.96 0.57 -52.18 -0.03 -0.99 16 3 C -0.15 -2.38 7.77 71.98 0.56 -1.82 16 4 C -0.14 -1.80 8.12 71.98 0.58 -1.21 16 5 C -0.07 -1.14 1.55 -10.79 -0.02 -1.15 16 6 C -0.11 -1.88 4.50 30.60 0.14 -1.74 16 7 C -0.11 -2.00 5.20 30.59 0.16 -1.84 16 8 C -0.08 -1.98 1.70 -10.79 -0.02 -2.00 16 9 C 0.06 1.65 4.54 86.30 0.39 2.04 16 10 N -0.53 -18.61 4.08 -896.36 -3.66 -22.27 16 11 C 0.07 2.80 4.97 86.33 0.43 3.22 16 12 C -0.09 -4.57 5.12 30.64 0.16 -4.42 16 13 C 0.04 2.30 2.16 -11.46 -0.02 2.27 16 14 C -0.53 -30.29 8.56 25.60 0.22 -30.07 16 15 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 16 C 0.01 0.62 5.31 84.65 0.45 1.06 16 17 N -0.92 -54.25 11.37 21.45 0.24 -54.01 16 18 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 C -0.10 -4.25 5.32 30.65 0.16 -4.08 16 23 C 0.07 2.36 5.46 86.33 0.47 2.83 16 24 C -0.10 -2.42 4.98 30.58 0.15 -2.26 16 25 C -0.11 -2.39 4.50 30.58 0.14 -2.25 16 26 H 0.05 0.85 6.43 -2.39 -0.02 0.84 16 27 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.06 0.93 6.43 -2.39 -0.02 0.91 16 31 H 0.05 0.91 6.43 -2.39 -0.02 0.89 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 0.74 6.43 -2.39 -0.02 0.73 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.06 1.06 6.43 -2.39 -0.02 1.04 16 37 H 0.07 1.07 6.43 -2.39 -0.02 1.06 16 38 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.56 6.07 -2.39 -0.01 1.54 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 2.82 5.70 -2.39 -0.01 2.80 16 44 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.06 3.24 6.18 -2.39 -0.01 3.22 16 46 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 47 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 48 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 49 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.05 2.24 8.14 -2.39 -0.02 2.23 16 51 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.09 2.59 8.12 -2.39 -0.02 2.57 16 53 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 54 H 0.05 1.48 7.55 -2.39 -0.02 1.46 16 55 H 0.06 1.28 6.43 -2.39 -0.02 1.27 16 56 H 0.05 1.22 6.43 -2.39 -0.02 1.20 16 Total: -1.00 -60.31 394.29 3.91 -56.40 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.79 Total: 17.10 kcal Atomic # 6 Polarization: -48.46 SS G_CDS: 4.51 Total: -43.95 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -3.42 Total: -76.27 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -60.31 3.91 -56.40 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473374845.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.174 kcal (2) G-P(sol) polarization free energy of solvation -60.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds