Wall clock time and date at job start Fri Apr 10 2020 22:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47494 * 2 1 4 4 C 1.53007 * 109.46755 * 120.00325 * 2 1 3 5 5 C 1.50694 * 109.47013 * 294.99670 * 4 2 1 6 6 H 1.08005 * 120.00485 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00148 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99476 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.46973 * 90.00202 * 9 7 5 11 11 H 1.48504 * 109.46975 * 210.00005 * 9 7 5 12 12 H 1.48502 * 109.47146 * 330.00099 * 9 7 5 13 13 C 1.52999 * 109.47003 * 239.99671 * 2 1 3 14 14 N 1.46908 * 109.46715 * 69.26281 * 13 2 1 15 15 C 1.47841 * 110.99724 * 281.26162 * 14 13 2 16 16 C 1.54915 * 104.79529 * 213.63421 * 15 14 13 17 17 C 1.55145 * 101.64902 * 37.07667 * 16 15 14 18 18 C 1.47443 * 110.99980 * 160.42024 * 14 13 2 19 19 H 1.09000 * 109.89122 * 242.82415 * 18 14 13 20 20 C 1.53004 * 109.88744 * 3.85386 * 18 14 13 21 21 C 1.52996 * 109.47021 * 182.76064 * 20 18 14 22 22 C 1.53008 * 109.47145 * 185.10566 * 21 20 18 23 23 C 1.52999 * 109.46890 * 294.99825 * 22 21 20 24 24 C 1.53002 * 109.47191 * 179.97438 * 23 22 21 25 25 C 1.53003 * 109.46835 * 60.00002 * 24 23 22 26 26 C 1.52999 * 109.47230 * 299.99974 * 25 24 23 27 27 C 1.53002 * 109.47191 * 60.00244 * 26 25 24 28 28 H 1.09001 * 109.47097 * 288.13498 * 1 2 3 29 29 H 1.09004 * 109.46376 * 48.13194 * 1 2 3 30 30 H 1.08998 * 109.47226 * 168.13003 * 1 2 3 31 31 H 1.08998 * 109.47301 * 54.99634 * 4 2 1 32 32 H 1.09004 * 109.46679 * 174.99678 * 4 2 1 33 33 H 0.97001 * 119.99849 * 179.97438 * 8 7 5 34 34 H 1.08995 * 109.47405 * 189.25736 * 13 2 1 35 35 H 1.08998 * 109.47575 * 309.26576 * 13 2 1 36 36 H 1.08995 * 110.37930 * 332.46806 * 15 14 13 37 37 H 1.09002 * 110.37474 * 94.81294 * 15 14 13 38 38 H 1.08997 * 110.99174 * 278.98335 * 16 15 14 39 39 H 1.08997 * 111.02207 * 155.17551 * 16 15 14 40 40 H 1.09000 * 110.70233 * 205.96624 * 17 16 15 41 41 H 1.08999 * 110.70730 * 82.72862 * 17 16 15 42 42 H 1.09004 * 109.47121 * 302.75306 * 20 18 14 43 43 H 1.08994 * 109.47386 * 62.75676 * 20 18 14 44 44 H 1.09002 * 109.47017 * 305.10179 * 21 20 18 45 45 H 1.09003 * 109.47646 * 65.10402 * 21 20 18 46 46 H 1.08999 * 109.46891 * 54.99994 * 22 21 20 47 47 H 1.09006 * 109.46835 * 299.99898 * 23 22 21 48 48 H 1.09005 * 109.47112 * 59.99680 * 23 22 21 49 49 H 1.08999 * 109.46745 * 300.00264 * 24 23 22 50 50 H 1.09002 * 109.47153 * 179.97438 * 24 23 22 51 51 H 1.09001 * 109.46750 * 180.02562 * 25 24 23 52 52 H 1.08998 * 109.47195 * 60.00018 * 25 24 23 53 53 H 1.08999 * 109.47492 * 300.00437 * 26 25 24 54 54 H 1.08997 * 109.47392 * 179.97438 * 26 25 24 55 55 H 1.08996 * 109.47589 * 180.02562 * 27 26 25 56 56 H 1.08998 * 109.47214 * 59.99968 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2493 5 6 1.6413 0.0569 2.4766 6 1 1.0800 0.9741 2.3758 7 6 1.9932 -0.4019 3.7283 8 7 2.6771 -1.5184 3.8510 9 14 1.4984 0.5625 5.2497 10 1 0.1715 0.0933 5.7233 11 1 2.5079 0.3531 6.3185 12 1 1.4225 2.0077 4.9167 13 6 2.0400 -0.7213 -1.2492 14 7 1.7408 0.0879 -2.4383 15 6 0.3246 -0.0591 -2.8365 16 6 0.3355 0.0447 -4.3821 17 6 1.6521 -0.6955 -4.7365 18 6 2.5918 -0.3087 -3.5751 19 1 3.2274 0.5257 -3.8714 20 6 3.4568 -1.5086 -3.1840 21 6 4.3845 -1.8688 -4.3461 22 6 5.1581 -3.1441 -4.0047 23 6 6.0835 -2.8763 -2.8161 24 6 6.8566 -4.1516 -2.4743 25 6 7.6903 -4.5820 -3.6829 26 6 6.7649 -4.8497 -4.8715 27 6 5.9918 -3.5744 -5.2133 28 1 -0.3633 0.3199 0.9766 29 1 -0.3632 0.6859 -0.7653 30 1 -0.3633 -1.0057 -0.2114 31 1 1.6053 -1.7199 1.2952 32 1 3.1263 -0.7996 1.2056 33 1 2.9249 -1.8410 4.7316 34 1 3.1173 -0.8667 -1.1705 35 1 1.5479 -1.6900 -1.3358 36 1 -0.0586 -1.0305 -2.5240 37 1 -0.2757 0.7428 -2.4066 38 1 0.3740 1.0856 -4.7033 39 1 -0.5266 -0.4635 -4.8142 40 1 2.0492 -0.3412 -5.6878 41 1 1.4935 -1.7736 -4.7614 42 1 4.0537 -1.2560 -2.3076 43 1 2.8155 -2.3593 -2.9539 44 1 3.7923 -2.0332 -5.2463 45 1 5.0866 -1.0528 -4.5171 46 1 4.4560 -3.9370 -3.7472 47 1 6.7857 -2.0833 -3.0737 48 1 5.4895 -2.5701 -1.9549 49 1 6.1542 -4.9443 -2.2166 50 1 7.5162 -3.9608 -1.6277 51 1 8.2408 -5.4908 -3.4395 52 1 8.3927 -3.7893 -3.9406 53 1 6.0625 -5.6423 -4.6139 54 1 7.3589 -5.1558 -5.7327 55 1 5.3322 -3.7652 -6.0598 56 1 6.6942 -2.7817 -5.4710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657180280.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:46 Heat of formation + Delta-G solvation = -58.874225 kcal Electronic energy + Delta-G solvation = -26790.563023 eV Core-core repulsion = 23503.671176 eV Total energy + Delta-G solvation = -3286.891847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 307.257 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88936 -39.50806 -37.00240 -35.01176 -34.41375 -32.16971 -31.63028 -31.27442 -28.82303 -27.67387 -26.97809 -24.74524 -24.61520 -23.34224 -22.17696 -21.57352 -21.07564 -20.58095 -19.86245 -18.41556 -17.20359 -16.64653 -16.44720 -16.38527 -16.07779 -15.60936 -15.06500 -14.91716 -14.79627 -14.62466 -14.52115 -14.10559 -13.90121 -13.68980 -13.53949 -13.40467 -13.20173 -13.03310 -12.84636 -12.78624 -12.60623 -12.37837 -12.29177 -12.25804 -12.05824 -11.97668 -11.79741 -11.72609 -11.67357 -11.55832 -11.44661 -11.29868 -11.13289 -10.98571 -10.85034 -10.83616 -10.70848 -10.53421 -9.11936 -8.17447 -6.26502 1.39047 1.40313 1.51500 2.41673 3.10111 3.15599 3.64076 3.71853 3.82780 3.86978 3.88083 4.01389 4.16075 4.24039 4.26701 4.34306 4.35842 4.43092 4.50232 4.52054 4.59528 4.60564 4.62046 4.66526 4.70643 4.76522 4.78260 4.81909 4.89890 4.92311 4.98681 5.02591 5.03982 5.10678 5.13506 5.15933 5.17270 5.22603 5.26271 5.26803 5.31524 5.37502 5.38349 5.41504 5.43186 5.49074 5.52031 5.53939 5.59289 5.64563 5.81983 5.89419 6.20546 6.24755 6.34529 6.88872 7.41403 8.94583 Molecular weight = 307.26amu Principal moments of inertia in cm(-1) A = 0.010756 B = 0.003584 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.688820 B = 7811.499894 C =10162.866482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 H 0.051 0.949 4 C 0.037 3.963 5 C -0.528 4.528 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.066 3.934 14 N -0.535 5.535 15 C 0.036 3.964 16 C -0.125 4.125 17 C -0.127 4.127 18 C 0.070 3.930 19 H 0.082 0.918 20 C -0.131 4.131 21 C -0.102 4.102 22 C -0.083 4.083 23 C -0.117 4.117 24 C -0.124 4.124 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.109 4.109 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.038 0.962 31 H -0.014 1.014 32 H -0.016 1.016 33 H 0.262 0.738 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.064 0.936 52 H 0.063 0.937 53 H 0.056 0.944 54 H 0.072 0.928 55 H 0.069 0.931 56 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -3.125 -23.273 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 H 0.069 0.931 4 C 0.000 4.000 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.062 4.062 14 N -0.258 5.258 15 C -0.091 4.091 16 C -0.163 4.163 17 C -0.165 4.165 18 C -0.038 4.038 19 H 0.100 0.900 20 C -0.169 4.169 21 C -0.140 4.140 22 C -0.102 4.102 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.146 4.146 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.083 0.917 52 H 0.082 0.918 53 H 0.075 0.925 54 H 0.091 0.909 55 H 0.088 0.912 56 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.020 -2.710 -23.015 23.520 hybrid contribution -0.204 -0.731 1.483 1.666 sum 3.816 -3.440 -21.533 22.137 Atomic orbital electron populations 1.21878 0.95325 1.00338 1.01088 1.20998 0.96113 0.98681 0.93294 0.93054 1.18961 0.93944 0.94398 0.92744 1.21621 1.34397 1.08516 0.92100 0.92289 1.25945 0.95234 0.96114 1.02593 1.70103 1.40218 1.22992 1.24229 0.85513 0.78044 0.79281 0.78634 1.19825 1.20805 1.18832 1.22364 1.00268 0.93422 0.90116 1.63642 1.04507 1.53597 1.04071 1.23338 0.89547 1.00074 0.96150 1.22730 0.98147 1.01565 0.93846 1.22825 0.94966 1.00325 0.98416 1.22542 0.94518 0.96335 0.90396 0.90040 1.22203 0.98227 0.97364 0.99116 1.21551 0.97639 0.97191 0.97571 1.21139 0.96487 0.97242 0.95330 1.21615 0.98239 0.97736 0.97844 1.21555 0.98823 0.97483 0.98253 1.21521 0.97777 1.01260 0.94816 1.21541 0.98409 0.97651 0.98055 1.21549 0.98590 0.97596 0.96880 0.94075 0.91258 0.94319 0.99571 0.99734 0.92963 0.91335 0.95904 0.94512 0.90290 0.90296 0.89563 0.89094 0.91442 0.92602 0.93289 0.90557 0.91591 0.92466 0.91898 0.93873 0.92850 0.92620 0.91698 0.91797 0.92513 0.90916 0.91197 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 7.97 71.98 0.57 -4.50 16 2 C -0.07 -3.13 2.52 -10.79 -0.03 -3.16 16 3 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.04 2.03 4.44 29.85 0.13 2.16 16 5 C -0.53 -30.83 8.24 25.60 0.21 -30.62 16 6 H 0.06 3.33 7.14 -2.91 -0.02 3.31 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 9 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 13 C 0.07 2.43 3.46 86.30 0.30 2.73 16 14 N -0.53 -16.20 5.10 -860.52 -4.39 -20.58 16 15 C 0.04 0.95 5.02 86.78 0.44 1.38 16 16 C -0.12 -2.39 7.08 31.98 0.23 -2.16 16 17 C -0.13 -2.36 5.41 31.78 0.17 -2.18 16 18 C 0.07 1.69 3.48 45.26 0.16 1.85 16 19 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 20 C -0.13 -3.21 2.96 30.59 0.09 -3.12 16 21 C -0.10 -1.90 4.59 30.60 0.14 -1.76 16 22 C -0.08 -1.60 2.19 -10.79 -0.02 -1.63 16 23 C -0.12 -2.61 4.96 30.59 0.15 -2.46 16 24 C -0.12 -2.60 5.92 30.60 0.18 -2.41 16 25 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 26 C -0.12 -1.79 5.92 30.59 0.18 -1.61 16 27 C -0.11 -1.66 5.21 30.60 0.16 -1.50 16 28 H 0.04 1.76 6.70 -2.39 -0.02 1.75 16 29 H 0.07 2.32 5.34 -2.38 -0.01 2.30 16 30 H 0.04 1.46 7.83 -2.39 -0.02 1.44 16 31 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H -0.02 -0.94 8.12 -2.38 -0.02 -0.96 16 33 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 34 H 0.07 2.63 5.29 -2.39 -0.01 2.62 16 35 H 0.02 0.86 7.04 -2.39 -0.02 0.84 16 36 H 0.04 1.02 7.15 -2.39 -0.02 1.01 16 37 H 0.08 2.11 6.10 -2.39 -0.01 2.09 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.25 7.79 -2.39 -0.02 1.23 16 42 H 0.06 1.64 4.69 -2.38 -0.01 1.63 16 43 H 0.05 1.31 7.38 -2.39 -0.02 1.30 16 44 H 0.08 1.21 7.24 -2.39 -0.02 1.19 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 48 H 0.04 1.17 6.68 -2.38 -0.02 1.15 16 49 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 51 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 54 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 55 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 56 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -64.68 401.21 2.42 -62.26 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.79 Total: 19.19 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 3.70 Total: -50.39 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -4.10 Total: -78.56 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -64.68 2.42 -62.26 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657180280.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.388 kcal (2) G-P(sol) polarization free energy of solvation -64.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds