Wall clock time and date at job start Fri Apr 10 2020 22:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47370 * 2 1 4 4 C 1.52997 * 109.47108 * 239.99507 * 2 1 3 5 5 C 1.50704 * 109.47216 * 65.00363 * 4 2 1 6 6 H 1.08006 * 119.99806 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00254 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00034 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00052 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46921 * 60.00506 * 9 7 5 11 11 H 1.48506 * 109.47039 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47434 * 300.00404 * 9 7 5 13 13 C 1.53006 * 109.47039 * 119.99517 * 2 1 3 14 14 N 1.46897 * 109.47070 * 184.10138 * 13 2 1 15 15 C 1.48539 * 111.00184 * 58.48334 * 14 13 2 16 16 C 1.54933 * 103.22765 * 159.71928 * 15 14 13 17 17 C 1.54595 * 102.92124 * 322.58861 * 16 15 14 18 18 C 1.47903 * 111.00106 * 175.87907 * 14 13 2 19 19 H 1.09001 * 110.07839 * 333.60426 * 18 14 13 20 20 C 1.52999 * 109.91379 * 94.80045 * 18 14 13 21 21 C 1.52996 * 109.47467 * 292.93766 * 20 18 14 22 22 C 1.52999 * 109.47149 * 185.68050 * 21 20 18 23 23 C 1.53001 * 109.47171 * 294.99978 * 22 21 20 24 24 C 1.53000 * 109.46828 * 179.97438 * 23 22 21 25 25 C 1.52996 * 109.47184 * 60.00552 * 24 23 22 26 26 C 1.53005 * 109.47101 * 299.99624 * 25 24 23 27 27 C 1.53000 * 109.46795 * 60.00137 * 26 25 24 28 28 H 1.09003 * 109.47308 * 304.71665 * 1 2 3 29 29 H 1.09001 * 109.46804 * 64.71592 * 1 2 3 30 30 H 1.08994 * 109.47501 * 184.71645 * 1 2 3 31 31 H 1.09006 * 109.47102 * 184.99681 * 4 2 1 32 32 H 1.08998 * 109.47220 * 305.00321 * 4 2 1 33 33 H 0.97002 * 120.00154 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46762 * 64.10155 * 13 2 1 35 35 H 1.08999 * 109.47224 * 304.10491 * 13 2 1 36 36 H 1.09000 * 110.66475 * 41.28177 * 15 14 13 37 37 H 1.08998 * 110.66573 * 278.15822 * 15 14 13 38 38 H 1.08992 * 110.72420 * 204.22785 * 16 15 14 39 39 H 1.08999 * 110.72408 * 80.94486 * 16 15 14 40 40 H 1.09004 * 110.30809 * 263.03964 * 17 16 15 41 41 H 1.09007 * 110.31064 * 140.87647 * 17 16 15 42 42 H 1.09003 * 109.47237 * 52.94401 * 20 18 14 43 43 H 1.09003 * 109.47147 * 172.94041 * 20 18 14 44 44 H 1.08994 * 109.47277 * 305.68494 * 21 20 18 45 45 H 1.09000 * 109.47041 * 65.68494 * 21 20 18 46 46 H 1.08998 * 109.47540 * 55.00389 * 22 21 20 47 47 H 1.08995 * 109.47467 * 300.00136 * 23 22 21 48 48 H 1.09000 * 109.46766 * 60.00787 * 23 22 21 49 49 H 1.08998 * 109.47841 * 300.00386 * 24 23 22 50 50 H 1.09000 * 109.47031 * 180.02562 * 24 23 22 51 51 H 1.09003 * 109.47663 * 179.97438 * 25 24 23 52 52 H 1.09001 * 109.47534 * 59.99545 * 25 24 23 53 53 H 1.08995 * 109.47187 * 300.00034 * 26 25 24 54 54 H 1.08995 * 109.46772 * 180.02562 * 26 25 24 55 55 H 1.09000 * 109.47031 * 180.02562 * 27 26 25 56 56 H 1.08995 * 109.47337 * 59.99989 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0800 0.9741 -2.3758 7 6 1.9933 -0.4019 -3.7282 8 7 2.6764 -1.5190 -3.8510 9 14 1.4986 0.5624 -5.2496 10 1 2.0898 1.9232 -5.1871 11 1 1.9937 -0.1377 -6.4621 12 1 0.0185 0.6680 -5.3093 13 6 2.0400 -0.7212 1.2494 14 7 3.5056 -0.6360 1.2999 15 6 3.9565 0.7793 1.3131 16 6 5.3931 0.6883 1.8861 17 6 5.2695 -0.4221 2.9545 18 6 4.0289 -1.2375 2.5457 19 1 3.2751 -1.1860 3.3314 20 6 4.4221 -2.6948 2.2956 21 6 3.1665 -3.5189 2.0038 22 6 3.5416 -4.9982 1.8939 23 6 4.4521 -5.2047 0.6818 24 6 4.8277 -6.6839 0.5723 25 6 3.5582 -7.5213 0.4050 26 6 2.6476 -7.3148 1.6171 27 6 2.2721 -5.8356 1.7266 28 1 -0.3634 0.5853 0.8447 29 1 -0.3633 0.4389 -0.9292 30 1 -0.3634 -1.0241 0.0845 31 1 3.1264 -0.7995 -1.2055 32 1 1.6053 -1.7199 -1.2950 33 1 2.9237 -1.8420 -4.7316 34 1 1.7379 -1.7679 1.2134 35 1 1.6178 -0.2515 2.1378 36 1 3.3202 1.3796 1.9634 37 1 3.9703 1.1880 0.3028 38 1 5.6863 1.6331 2.3437 39 1 6.1006 0.3989 1.1091 40 1 5.1251 0.0172 3.9417 41 1 6.1572 -1.0546 2.9473 42 1 5.0978 -2.7475 1.4420 43 1 4.9210 -3.0932 3.1791 44 1 2.4481 -3.3854 2.8126 45 1 2.7232 -3.1858 1.0654 46 1 4.0647 -5.3086 2.7984 47 1 3.9290 -4.8943 -0.2227 48 1 5.3567 -4.6085 0.8012 49 1 5.3509 -6.9939 1.4768 50 1 5.4767 -6.8310 -0.2910 51 1 3.8257 -8.5751 0.3266 52 1 3.0349 -7.2114 -0.4995 53 1 3.1708 -7.6248 2.5217 54 1 1.7435 -7.9118 1.4982 55 1 1.6237 -5.6884 2.5904 56 1 1.7488 -5.5257 0.8221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657180281.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:49 Heat of formation + Delta-G solvation = -67.055115 kcal Electronic energy + Delta-G solvation = -27408.947867 eV Core-core repulsion = 24121.701270 eV Total energy + Delta-G solvation = -3287.246597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 307.257 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.57788 -39.43171 -36.97673 -34.89678 -34.41130 -31.95494 -31.65985 -31.26138 -28.96315 -27.80452 -26.49285 -25.02084 -24.12309 -23.31814 -22.48045 -21.34820 -20.88840 -20.49701 -20.12556 -18.48259 -17.05222 -16.68072 -16.48585 -16.15888 -15.80151 -15.42455 -15.07146 -14.97312 -14.87128 -14.56005 -14.14779 -14.12089 -14.02091 -13.59684 -13.37970 -13.29098 -13.18544 -12.97339 -12.81816 -12.76677 -12.63366 -12.49390 -12.30550 -12.15544 -11.99269 -11.97138 -11.90900 -11.83559 -11.65033 -11.51688 -11.39796 -11.28074 -11.20513 -10.88028 -10.80830 -10.74256 -10.63574 -10.46242 -9.08727 -8.10623 -6.19511 1.38501 1.41178 1.48598 2.43992 3.17126 3.21813 3.66672 3.81198 3.83235 3.89852 3.94463 4.12846 4.20509 4.25636 4.26533 4.37127 4.39595 4.45268 4.53283 4.57061 4.64451 4.66384 4.67874 4.69550 4.72541 4.76352 4.81216 4.86655 4.89509 4.93360 4.99390 5.01319 5.07051 5.11447 5.13210 5.17107 5.25263 5.27375 5.31581 5.33295 5.36029 5.37897 5.41767 5.44841 5.46673 5.49861 5.54049 5.61197 5.66677 5.73639 5.95570 6.03140 6.21643 6.38331 6.39294 6.98752 7.47433 9.00261 Molecular weight = 307.26amu Principal moments of inertia in cm(-1) A = 0.009196 B = 0.004702 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.163711 B = 5953.105765 C = 7726.533874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 H 0.050 0.950 4 C 0.056 3.944 5 C -0.531 4.531 6 H 0.055 0.945 7 C 0.001 3.999 8 N -0.931 5.931 9 Si 0.953 3.047 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.063 3.937 14 N -0.521 5.521 15 C 0.036 3.964 16 C -0.118 4.118 17 C -0.118 4.118 18 C 0.062 3.938 19 H 0.052 0.948 20 C -0.093 4.093 21 C -0.112 4.112 22 C -0.075 4.075 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.117 4.117 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.042 0.958 31 H -0.001 1.001 32 H -0.026 1.026 33 H 0.259 0.741 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.040 0.960 46 H 0.083 0.917 47 H 0.028 0.972 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.055 0.945 51 H 0.073 0.927 52 H 0.041 0.959 53 H 0.075 0.925 54 H 0.064 0.936 55 H 0.069 0.931 56 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -5.944 17.867 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.099 4.099 3 H 0.068 0.932 4 C 0.019 3.981 5 C -0.569 4.569 6 H 0.073 0.927 7 C -0.196 4.196 8 N -0.572 5.572 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.194 1.194 13 C -0.065 4.065 14 N -0.246 5.246 15 C -0.092 4.092 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.046 4.046 19 H 0.070 0.930 20 C -0.131 4.131 21 C -0.150 4.150 22 C -0.093 4.093 23 C -0.152 4.152 24 C -0.152 4.152 25 C -0.160 4.160 26 C -0.150 4.150 27 C -0.154 4.154 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.018 0.982 32 H -0.008 1.008 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.101 0.899 47 H 0.047 0.953 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.074 0.926 51 H 0.092 0.908 52 H 0.060 0.940 53 H 0.093 0.907 54 H 0.083 0.917 55 H 0.087 0.913 56 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.348 -6.339 17.284 18.916 hybrid contribution -0.727 0.853 -1.024 1.518 sum 3.621 -5.486 16.260 17.539 Atomic orbital electron populations 1.21641 0.95193 1.00802 1.00970 1.21128 0.95486 0.98436 0.94898 0.93154 1.18732 0.94973 0.93031 0.91370 1.21698 1.34165 1.08424 0.92592 0.92700 1.25869 0.95414 0.96034 1.02299 1.70127 1.40306 1.22874 1.23873 0.85686 0.78856 0.78898 0.78706 1.19391 1.21123 1.19360 1.22357 0.87598 1.00525 0.96038 1.64617 1.10047 1.14013 1.35887 1.23143 0.96373 0.89778 0.99893 1.22439 0.95413 0.99565 0.98204 1.22431 0.97563 0.96838 0.98746 1.22527 0.96544 0.95450 0.90119 0.93010 1.21549 0.97365 0.92900 1.01246 1.21678 0.97970 0.94651 1.00660 1.21094 0.95861 0.94207 0.98139 1.21574 0.99246 0.96800 0.97574 1.21511 0.97415 0.94313 1.01981 1.21562 0.96316 1.00022 0.98100 1.21494 0.99469 0.95537 0.98494 1.21598 0.97235 0.95582 1.01011 0.91963 0.93602 0.93846 0.98217 1.00773 0.93278 0.91324 0.94719 0.93563 0.92697 0.89371 0.92217 0.89900 0.90225 0.93110 0.90024 0.92061 0.94166 0.89866 0.95331 0.92188 0.90552 0.92626 0.90811 0.94008 0.90651 0.91695 0.91258 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 9.07 71.98 0.65 -4.26 16 2 C -0.08 -3.42 2.15 -10.79 -0.02 -3.44 16 3 H 0.05 2.16 6.69 -2.39 -0.02 2.15 16 4 C 0.06 3.06 4.39 29.85 0.13 3.19 16 5 C -0.53 -30.98 8.34 25.60 0.21 -30.77 16 6 H 0.05 3.09 7.08 -2.91 -0.02 3.07 16 7 C 0.00 0.06 5.46 84.65 0.46 0.53 16 8 N -0.93 -58.87 13.29 21.45 0.28 -58.58 16 9 Si 0.95 45.87 29.54 68.60 2.03 47.90 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 13 C 0.06 2.23 3.89 86.31 0.34 2.57 16 14 N -0.52 -17.85 4.19 -858.10 -3.59 -21.44 16 15 C 0.04 1.14 5.34 86.65 0.46 1.60 16 16 C -0.12 -2.96 7.06 31.80 0.22 -2.74 16 17 C -0.12 -2.55 6.57 31.47 0.21 -2.35 16 18 C 0.06 1.63 2.60 45.05 0.12 1.75 16 19 H 0.05 1.29 7.68 -2.39 -0.02 1.28 16 20 C -0.09 -2.38 4.28 30.59 0.13 -2.25 16 21 C -0.11 -3.08 3.58 30.59 0.11 -2.97 16 22 C -0.07 -1.81 2.19 -10.79 -0.02 -1.84 16 23 C -0.11 -3.17 4.96 30.59 0.15 -3.02 16 24 C -0.11 -2.60 5.92 30.59 0.18 -2.42 16 25 C -0.12 -2.68 5.92 30.59 0.18 -2.50 16 26 C -0.11 -2.24 5.92 30.60 0.18 -2.06 16 27 C -0.12 -2.77 5.21 30.60 0.16 -2.61 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.04 1.91 6.83 -2.39 -0.02 1.89 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.00 -0.04 7.59 -2.38 -0.02 -0.05 16 32 H -0.03 -1.59 8.14 -2.39 -0.02 -1.61 16 33 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.07 2.55 5.33 -2.39 -0.01 2.54 16 35 H 0.03 1.09 7.98 -2.39 -0.02 1.07 16 36 H 0.05 1.34 8.01 -2.39 -0.02 1.32 16 37 H 0.05 2.08 7.56 -2.39 -0.02 2.06 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.08 1.58 7.69 -2.38 -0.02 1.56 16 42 H 0.05 1.54 6.85 -2.39 -0.02 1.52 16 43 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.04 1.45 6.12 -2.39 -0.01 1.43 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.06 1.66 6.69 -2.39 -0.02 1.64 16 49 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 54 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 55 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 56 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -66.57 408.13 3.35 -63.21 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.78 Total: 22.50 kcal Atomic # 6 Polarization: -57.45 SS G_CDS: 3.86 Total: -53.59 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -3.31 Total: -80.03 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -66.57 3.35 -63.21 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657180281.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.840 kcal (2) G-P(sol) polarization free energy of solvation -66.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds