Wall clock time and date at job start Fri Apr 10 2020 22:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48497 * 109.46944 * 269.99184 * 3 2 1 5 5 H 1.48496 * 109.47640 * 29.99666 * 3 2 1 6 6 H 1.48508 * 109.47212 * 149.99838 * 3 2 1 7 7 C 1.37875 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99773 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46961 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47287 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.53945 * 68.38036 * 11 10 9 13 13 O 1.42104 * 110.54469 * 291.62953 * 11 10 9 14 14 C 1.76201 * 104.45245 * 180.02562 * 11 10 9 15 15 C 1.38315 * 119.88194 * 90.00207 * 14 11 10 16 16 C 1.38022 * 120.11653 * 180.02562 * 15 14 11 17 17 C 1.39301 * 119.88394 * 359.97438 * 16 15 14 18 18 C 1.48467 * 120.11880 * 179.97438 * 17 16 15 19 19 N 1.34049 * 126.67276 * 0.02562 * 18 17 16 20 20 N 1.28984 * 107.26777 * 179.97438 * 19 18 17 21 21 N 1.28733 * 108.94425 * 0.02562 * 20 19 18 22 22 H 0.96998 * 125.34102 * 179.97438 * 21 20 19 23 23 N 1.28876 * 109.31590 * 359.97438 * 21 20 19 24 24 C 1.39294 * 119.76355 * 0.25124 * 17 16 15 25 25 C 1.38030 * 119.88321 * 359.49518 * 24 17 16 26 26 H 0.97004 * 120.00147 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46482 * 60.00341 * 9 7 2 28 28 H 1.08990 * 109.47608 * 300.00325 * 9 7 2 29 29 H 1.09006 * 109.46967 * 60.00418 * 10 9 7 30 30 H 1.08996 * 109.47780 * 300.00602 * 10 9 7 31 31 H 1.08007 * 119.93892 * 359.97438 * 15 14 11 32 32 H 1.08011 * 120.06010 * 179.97438 * 16 15 14 33 33 H 1.08004 * 120.05620 * 179.75113 * 24 17 16 34 34 H 1.08002 * 119.94485 * 180.23225 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 16 1.3383 -5.2330 0.0021 12 8 0.6639 -5.4199 -1.2347 13 8 0.6648 -5.4195 1.2394 14 6 2.5962 -6.4669 0.0025 15 6 3.0881 -6.9491 1.2019 16 6 4.0738 -7.9152 1.2079 17 6 4.5728 -8.4051 0.0031 18 6 5.6334 -9.4440 0.0035 19 7 6.2054 -10.0038 1.0788 20 7 7.0742 -10.8556 0.6505 21 7 7.0669 -10.8487 -0.6367 22 1 7.6289 -11.3993 -1.2040 23 7 6.1957 -9.9953 -1.0535 24 6 4.0771 -7.9127 -1.2019 25 6 3.0877 -6.9503 -1.1966 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5574 -0.8881 28 1 0.6247 -2.5563 0.8918 29 1 2.8726 -3.6039 0.8910 30 1 2.8713 -3.6047 -0.8889 31 1 2.7009 -6.5682 2.1355 32 1 4.4576 -8.2908 2.1451 33 1 4.4634 -8.2863 -2.1388 34 1 2.7000 -6.5705 -2.1304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609495607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:44 Heat of formation + Delta-G solvation = 74.189242 kcal Electronic energy + Delta-G solvation = -21620.033499 eV Core-core repulsion = 18069.365955 eV Total energy + Delta-G solvation = -3550.667544 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 308.073 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.87033 -39.41029 -36.63170 -35.47699 -34.83186 -34.03269 -33.92429 -31.31331 -31.21525 -30.98743 -25.71932 -25.27861 -24.98638 -22.77343 -22.25535 -21.47448 -19.63522 -18.74788 -17.81189 -17.54907 -16.85957 -16.28541 -15.84701 -15.32734 -14.94672 -14.72293 -14.54259 -14.27585 -13.71693 -13.43501 -13.42051 -13.13617 -12.57720 -12.48992 -11.81614 -11.77758 -11.74005 -11.60233 -11.52865 -11.43373 -11.29214 -11.09323 -10.98323 -10.68365 -10.41480 -10.38604 -9.74790 -9.35674 -9.25531 -9.08557 -8.51539 -6.13864 -4.19661 0.07361 0.55795 0.75897 1.10773 1.81859 1.86319 3.21068 3.26005 3.28647 3.32598 3.34995 3.40846 3.77085 4.27735 4.38415 4.40580 4.68450 4.78229 4.81336 5.03380 5.12611 5.21473 5.25538 5.39030 5.64142 5.67097 5.76622 5.84426 5.96166 5.96311 6.06887 6.42803 6.54466 7.28114 7.33478 7.72137 7.79135 8.14602 8.83809 9.45322 10.97050 Molecular weight = 308.07amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.002877 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.956960 B = 9730.714155 C =10266.002063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.563 4.563 11 S 2.471 3.529 12 O -0.943 6.943 13 O -0.943 6.943 14 C -0.636 4.636 15 C -0.026 4.026 16 C -0.099 4.099 17 C 0.023 3.977 18 C 0.215 3.785 19 N -0.263 5.263 20 N -0.048 5.048 21 N -0.226 5.226 22 H 0.477 0.523 23 N -0.287 5.287 24 C -0.103 4.103 25 C -0.027 4.027 26 H 0.265 0.735 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.276 -19.979 -2.034 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.081 0.919 9 C -0.013 4.013 10 C -0.696 4.696 11 S 2.653 3.347 12 O -0.941 6.941 13 O -0.940 6.940 14 C -0.721 4.721 15 C -0.044 4.044 16 C -0.120 4.120 17 C 0.019 3.981 18 C -0.065 4.065 19 N -0.136 5.136 20 N -0.043 5.043 21 N -0.072 5.072 22 H 0.331 0.669 23 N -0.139 5.139 24 C -0.124 4.124 25 C -0.045 4.045 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.170 0.830 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 12.690 -20.546 -1.741 24.212 hybrid contribution 1.521 0.656 -0.623 1.769 sum 14.210 -19.890 -2.364 24.559 Atomic orbital electron populations 1.69950 1.06105 1.27260 1.49439 1.25057 0.94973 0.99527 0.94863 0.86467 0.79728 0.82835 0.78241 1.20472 1.21009 1.19728 1.20992 0.93127 0.89606 1.52336 0.91914 1.19041 0.92751 0.90278 0.99249 1.30197 1.13359 1.15368 1.10725 1.06479 0.76063 0.77326 0.74786 1.93529 1.70651 1.85467 1.44418 1.93531 1.70679 1.85451 1.44338 1.31289 1.21259 1.20492 0.99033 1.20983 0.92571 0.93419 0.97448 1.21292 0.96523 0.96675 0.97461 1.17478 0.92580 0.92879 0.95125 1.23723 0.99111 0.99251 0.84391 1.76114 1.05749 1.06205 1.25503 1.78940 1.15738 1.15687 0.93907 1.47758 1.26383 1.27174 1.05909 0.66887 1.74945 1.05770 1.06410 1.26766 1.21261 0.96829 0.97038 0.97249 1.20960 0.92623 0.93508 0.97435 0.92482 0.94546 0.94509 0.85628 0.85679 0.83030 0.83792 0.84154 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.52 -13.94 9.11 -34.44 -0.31 -14.25 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.62 4.98 -27.88 -0.14 0.48 16 10 C -0.56 -10.03 5.92 37.16 0.22 -9.81 16 11 S 2.47 41.76 5.15 -107.50 -0.55 41.20 16 12 O -0.94 -18.26 17.12 -57.54 -0.98 -19.24 16 13 O -0.94 -18.30 17.11 -57.54 -0.98 -19.28 16 14 C -0.64 -8.67 5.66 -39.52 -0.22 -8.89 16 15 C -0.03 -0.32 9.46 -39.63 -0.37 -0.69 16 16 C -0.10 -1.11 9.70 -39.27 -0.38 -1.49 16 17 C 0.02 0.26 5.88 -104.89 -0.62 -0.36 16 18 C 0.22 2.36 7.94 -156.30 -1.24 1.11 16 19 N -0.26 -2.97 12.23 32.16 0.39 -2.58 16 20 N -0.05 -0.44 13.47 60.35 0.81 0.37 16 21 N -0.23 -1.46 7.90 60.35 0.48 -0.98 16 22 H 0.48 0.67 8.96 -340.37 -3.05 -2.38 16 23 N -0.29 -2.62 12.08 32.17 0.39 -2.24 16 24 C -0.10 -1.12 9.70 -39.27 -0.38 -1.50 16 25 C -0.03 -0.32 9.46 -39.63 -0.37 -0.70 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.13 1.96 8.14 -51.92 -0.42 1.54 16 30 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 31 H 0.15 1.68 7.56 -52.48 -0.40 1.28 16 32 H 0.14 1.38 7.89 -52.48 -0.41 0.96 16 33 H 0.14 1.23 7.88 -52.48 -0.41 0.82 16 34 H 0.15 1.63 7.56 -52.49 -0.40 1.24 16 LS Contribution 320.94 15.07 4.84 4.84 Total: -1.00 -35.83 320.94 -9.73 -45.56 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -5.90 Total: -3.69 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: -3.92 Total: -34.57 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 2.81 Total: -30.58 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.97 Total: -38.52 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 41.76 SS G_CDS: -0.55 Total: 41.20 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.83 -9.73 -45.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609495607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.745 kcal (2) G-P(sol) polarization free energy of solvation -35.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds