Wall clock time and date at job start Fri Apr 10 2020 22:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35720 * 117.00726 * 2 1 4 4 C 1.41853 * 126.79107 * 179.97438 * 3 2 1 5 5 C 1.36671 * 103.81485 * 180.20594 * 4 3 2 6 6 C 1.47538 * 126.88122 * 179.75980 * 5 4 3 7 7 O 1.21582 * 119.99599 * 354.07538 * 6 5 4 8 8 N 1.34775 * 120.00107 * 174.06950 * 6 5 4 9 9 C 1.46498 * 119.99632 * 4.35886 * 8 6 5 10 10 C 1.50701 * 109.47362 * 83.55015 * 9 8 6 11 11 H 1.07998 * 119.99367 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00229 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99553 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00066 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47492 * 89.99991 * 14 12 10 16 16 H 1.48501 * 109.47009 * 210.00116 * 14 12 10 17 17 H 1.48500 * 109.46968 * 329.99698 * 14 12 10 18 18 C 1.46495 * 119.99791 * 184.35920 * 8 6 5 19 19 C 1.52998 * 109.47357 * 94.79355 * 18 8 6 20 20 F 1.39898 * 109.47418 * 59.99741 * 19 18 8 21 21 F 1.39900 * 109.46968 * 179.97438 * 19 18 8 22 22 F 1.39898 * 109.47115 * 299.99463 * 19 18 8 23 23 O 1.34661 * 106.23831 * 359.63806 * 5 4 3 24 24 N 1.20875 * 111.63330 * 0.39531 * 23 5 4 25 25 H 1.08996 * 109.47731 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46916 * 300.00072 * 1 2 3 27 27 H 1.09003 * 109.47039 * 59.99289 * 1 2 3 28 28 H 1.08005 * 128.09503 * 359.95182 * 4 3 2 29 29 H 1.09000 * 109.46709 * 203.54999 * 9 8 6 30 30 H 1.08998 * 109.47523 * 323.54232 * 9 8 6 31 31 H 0.97003 * 119.99902 * 180.02562 * 13 12 10 32 32 H 1.09010 * 109.46847 * 214.79198 * 18 8 6 33 33 H 1.08999 * 109.47487 * 334.78404 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2092 0.0000 4 6 3.4432 1.4502 0.0005 5 6 3.5393 2.8136 0.0050 6 6 4.7787 3.6139 0.0124 7 8 5.8570 3.0634 0.1237 8 7 4.7156 4.9551 -0.1044 9 6 3.4141 5.6265 -0.1425 10 6 2.9171 5.8391 1.2643 11 1 3.5111 5.5068 2.1027 12 6 1.7040 6.4577 1.4808 13 7 0.9810 6.8626 0.4596 14 14 1.0877 6.7205 3.2244 15 1 1.5656 8.0340 3.7257 16 1 -0.3971 6.6978 3.2332 17 1 1.6044 5.6384 4.1004 18 6 5.9484 5.7414 -0.1932 19 6 6.2896 5.9906 -1.6637 20 9 5.2439 6.6926 -2.2726 21 9 7.4667 6.7420 -1.7484 22 9 6.4701 4.7655 -2.3146 23 8 2.2761 3.2801 -0.0013 24 7 1.4688 2.3805 -0.0011 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 4.2443 0.7259 0.0017 29 1 3.5170 6.5903 -0.6410 30 1 2.7023 5.0086 -0.6899 31 1 0.1277 7.2982 0.6119 32 1 5.8078 6.6960 0.3140 33 1 6.7632 5.1945 0.2813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183988746.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:00:42 Heat of formation + Delta-G solvation = -146.822967 kcal Electronic energy + Delta-G solvation = -26545.665202 eV Core-core repulsion = 21968.511488 eV Total energy + Delta-G solvation = -4577.153715 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.76408 -47.31636 -47.20968 -44.49626 -39.42209 -38.62597 -35.65118 -32.82890 -32.76037 -31.65231 -29.45209 -27.55510 -27.12924 -24.26680 -23.29111 -22.87598 -22.11736 -20.17873 -18.42829 -18.22425 -17.73739 -17.48325 -17.20610 -16.55392 -16.33174 -15.77829 -15.57251 -15.30980 -14.76291 -14.41653 -14.23264 -14.13442 -14.10448 -13.69350 -13.46654 -13.41144 -13.39076 -13.00824 -12.51269 -12.16339 -12.11224 -11.96650 -11.72586 -11.39436 -11.14132 -10.99762 -10.79442 -10.30262 -10.01908 -9.86682 -9.48403 -8.99720 -8.58914 -8.29509 -6.22086 -4.29810 1.18221 2.45030 2.78959 2.93841 3.00062 3.21295 3.29132 3.31662 3.44410 3.64461 4.14707 4.30031 4.34904 4.44260 4.59838 4.99478 5.11106 5.14156 5.19057 5.21619 5.41978 5.51951 5.53894 5.59320 5.91964 6.18983 7.04554 7.11691 7.16347 7.61692 7.73923 7.91890 8.19437 8.57928 8.74565 9.37605 10.85750 Molecular weight = 308.08amu Principal moments of inertia in cm(-1) A = 0.010466 B = 0.006929 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.601432 B = 4040.260736 C = 6011.782544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.287 6.287 3 C 0.184 3.816 4 C -0.172 4.172 5 C -0.039 4.039 6 C 0.609 3.391 7 O -0.529 6.529 8 N -0.581 5.581 9 C 0.225 3.775 10 C -0.544 4.544 11 H 0.062 0.938 12 C 0.075 3.925 13 N -0.881 5.881 14 Si 0.895 3.105 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.079 3.921 19 C 0.432 3.568 20 F -0.176 7.176 21 F -0.187 7.187 22 F -0.182 7.182 23 O 0.176 5.824 24 N -0.392 5.392 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.184 0.816 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.266 0.734 32 H 0.130 0.870 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.369 -5.988 -2.386 7.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.194 6.194 3 C -0.012 4.012 4 C -0.195 4.195 5 C -0.106 4.106 6 C 0.395 3.605 7 O -0.407 6.407 8 N -0.311 5.311 9 C 0.107 3.893 10 C -0.583 4.583 11 H 0.081 0.919 12 C -0.130 4.130 13 N -0.518 5.518 14 Si 0.723 3.277 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.047 4.047 19 C 0.377 3.623 20 F -0.158 7.158 21 F -0.168 7.168 22 F -0.163 7.163 23 O 0.106 5.894 24 N -0.109 5.109 25 H 0.120 0.880 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.201 0.799 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.148 0.852 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.538 -6.090 -2.418 7.446 hybrid contribution -0.134 -0.067 0.703 0.718 sum 3.404 -6.156 -1.715 7.241 Atomic orbital electron populations 1.23022 0.77143 1.03577 1.02554 1.86139 1.22325 1.20918 1.90000 1.21835 0.90513 0.85869 1.03003 1.21975 0.94274 0.94672 1.08568 1.23681 0.87753 0.92942 1.06230 1.16592 0.85226 0.81837 0.76807 1.90797 1.27158 1.71546 1.51226 1.48101 1.08812 1.05035 1.69144 1.20008 0.76193 0.94160 0.98943 1.21289 1.04881 1.40661 0.91438 0.91946 1.24833 0.96098 0.94811 0.97236 1.69908 1.13121 1.38647 1.30083 0.86538 0.78151 0.78639 0.84414 1.20442 1.20996 1.19836 1.22531 0.91275 1.01468 0.89432 1.21425 0.74270 0.74065 0.92582 1.93217 1.57653 1.79248 1.85654 1.93155 1.49421 1.77217 1.97030 1.93191 1.95119 1.44015 1.83982 1.85554 1.11066 1.27246 1.65560 1.74065 1.17502 0.96584 1.22794 0.88006 0.92237 0.92273 0.79898 0.92795 0.92668 0.92376 0.85172 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.73 101.05 1.08 1.47 16 2 O -0.29 -4.43 10.57 -18.87 -0.20 -4.63 16 3 C 0.18 3.29 8.00 -16.72 -0.13 3.15 16 4 C -0.17 -2.97 10.97 -38.77 -0.43 -3.40 16 5 C -0.04 -0.77 6.87 -36.36 -0.25 -1.02 16 6 C 0.61 12.00 7.35 -12.47 -0.09 11.91 16 7 O -0.53 -10.58 16.40 5.29 0.09 -10.50 16 8 N -0.58 -11.22 2.39 -176.29 -0.42 -11.65 16 9 C 0.23 5.04 4.48 -5.19 -0.02 5.02 16 10 C -0.54 -13.40 8.56 -34.44 -0.29 -13.69 16 11 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 12 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 13 N -0.88 -23.60 13.29 55.43 0.74 -22.87 16 14 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.08 1.24 5.50 -4.05 -0.02 1.22 16 19 C 0.43 6.82 3.29 37.16 0.12 6.94 16 20 F -0.18 -3.05 15.89 2.25 0.04 -3.02 16 21 F -0.19 -2.68 17.32 2.25 0.04 -2.64 16 22 F -0.18 -3.10 16.99 2.25 0.04 -3.06 16 23 O 0.18 3.79 7.37 15.50 0.11 3.91 16 24 N -0.39 -7.94 11.50 30.47 0.35 -7.59 16 25 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.18 2.66 8.06 -52.48 -0.42 2.23 16 29 H 0.05 1.25 6.97 -51.93 -0.36 0.89 16 30 H 0.06 1.33 5.39 -51.93 -0.28 1.05 16 31 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.13 1.83 8.11 -51.92 -0.42 1.41 16 33 H 0.12 1.78 7.23 -51.93 -0.38 1.40 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -28.35 310.08 -2.37 -30.72 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -2.67 Total: -1.98 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -0.13 Total: 13.43 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.67 Total: -42.10 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.00 Total: -11.22 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.11 Total: -8.72 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.35 -2.37 -30.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183988746.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.103 kcal (2) G-P(sol) polarization free energy of solvation -28.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds