Wall clock time and date at job start Fri Apr 10 2020 22:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 C 1.53042 * 113.15358 * 280.54829 * 21 19 18 23 23 S 1.81503 * 89.86331 * 211.86912 * 22 21 19 24 24 C 1.53049 * 113.15223 * 180.11708 * 21 19 18 25 25 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 27 27 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 28 28 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 29 29 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 30 30 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 31 31 H 1.07997 * 120.32294 * 180.02562 * 14 13 12 32 32 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 33 33 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 34 34 H 1.09004 * 112.49710 * 50.33971 * 21 19 18 35 35 H 1.08994 * 113.14982 * 327.11342 * 22 21 19 36 36 H 1.09003 * 113.14597 * 96.59552 * 22 21 19 37 37 H 1.08997 * 113.14871 * 263.41531 * 24 21 19 38 38 H 1.09004 * 113.14234 * 32.85138 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9794 -0.0009 14 6 4.3720 -7.1695 -0.0008 15 6 3.6879 -8.3690 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6492 -7.2881 0.0080 18 7 0.2557 -7.3666 0.0159 19 6 -0.3514 -8.5699 0.0225 20 8 0.3131 -9.5844 0.0221 21 6 -1.8560 -8.6546 0.0316 22 6 -2.4632 -8.4278 1.4180 23 16 -3.8197 -9.5605 1.0045 24 6 -2.3776 -10.0934 0.0412 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5568 -0.8902 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6043 -0.8905 29 1 2.8721 -3.6042 0.8895 30 1 4.1698 -5.0282 -0.0013 31 1 5.4519 -7.1576 -0.0007 32 1 4.2407 -9.2968 0.0000 33 1 -0.2758 -6.5552 0.0166 34 1 -2.3132 -8.0383 -0.7426 35 1 -1.8314 -8.7933 2.2275 36 1 -2.7947 -7.4018 1.5779 37 1 -2.6375 -10.4617 -0.9513 38 1 -1.7289 -10.7807 0.5843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601032366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:05 Heat of formation + Delta-G solvation = -8.814266 kcal Electronic energy + Delta-G solvation = -22272.401320 eV Core-core repulsion = 18821.674817 eV Total energy + Delta-G solvation = -3450.726502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03320 -39.66062 -37.88125 -35.97135 -34.91366 -33.51245 -31.70149 -30.65619 -29.21940 -26.61393 -25.55579 -25.09454 -23.18992 -22.57694 -20.97483 -20.12029 -18.48650 -17.88547 -17.48637 -16.55253 -16.20621 -16.14433 -15.82830 -15.42185 -15.00844 -14.72264 -14.60481 -14.20062 -13.95923 -13.62363 -13.28555 -12.96128 -12.90127 -12.43859 -12.37080 -12.08572 -11.97847 -11.22898 -11.11907 -11.02286 -10.97226 -10.80814 -10.71489 -10.19995 -10.09774 -9.81155 -9.45130 -9.29277 -9.12769 -8.55257 -8.09687 -7.74787 -6.20979 -4.26121 1.10164 1.37951 1.40769 1.53247 2.50591 2.75331 3.20537 3.26610 3.28791 3.46697 3.83570 3.96510 4.20416 4.31218 4.45191 4.53525 4.74169 4.89135 4.98998 5.03805 5.09386 5.16040 5.22598 5.28576 5.40046 5.50646 5.80388 5.85059 5.99363 6.11833 6.26261 6.48918 6.54320 7.13601 7.29217 7.48430 7.58358 7.79918 7.93579 8.10780 8.23086 8.79016 9.39114 10.90378 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.003265 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.444765 B = 8573.384176 C =10594.509822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.315 6.315 12 C 0.070 3.930 13 C -0.148 4.148 14 C -0.157 4.157 15 C 0.074 3.926 16 N -0.444 5.444 17 C 0.325 3.675 18 N -0.647 5.647 19 C 0.519 3.481 20 O -0.473 6.473 21 C -0.117 4.117 22 C -0.073 4.073 23 S -0.280 6.280 24 C -0.061 4.061 25 H 0.264 0.736 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.146 0.854 31 H 0.135 0.865 32 H 0.157 0.843 33 H 0.426 0.574 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 -16.668 0.346 16.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.018 3.982 13 C -0.175 4.175 14 C -0.179 4.179 15 C -0.082 4.082 16 N -0.159 5.159 17 C 0.092 3.908 18 N -0.295 5.295 19 C 0.301 3.699 20 O -0.343 6.343 21 C -0.140 4.140 22 C -0.222 4.222 23 S -0.053 6.053 24 C -0.210 4.210 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.163 0.837 31 H 0.153 0.847 32 H 0.174 0.826 33 H 0.264 0.736 34 H 0.155 0.845 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.216 -18.390 0.639 18.442 hybrid contribution 1.962 2.601 -0.213 3.265 sum 0.747 -15.790 0.425 15.813 Atomic orbital electron populations 1.69959 1.06097 1.27124 1.49439 1.24976 0.94917 0.99417 0.94756 0.86483 0.79748 0.82865 0.78284 1.20449 1.20999 1.19745 1.20938 0.93059 0.90122 1.52619 0.92349 1.19125 0.94113 0.88891 0.98892 1.23414 0.97278 0.80238 0.99875 1.86101 1.36270 1.12929 1.87508 1.19600 0.91152 0.87130 1.00303 1.21629 0.92258 1.00410 1.03202 1.21912 1.01262 0.92521 1.02165 1.22410 0.88760 0.97928 0.99129 1.67595 1.07939 1.26916 1.13433 1.17792 0.84759 0.86990 1.01235 1.43434 1.03848 1.10369 1.71820 1.20347 0.89216 0.83353 0.76978 1.90806 1.65331 1.33987 1.44144 1.22828 0.93142 0.98579 0.99444 1.24236 0.95361 1.03781 0.98803 1.89074 1.15353 1.41633 1.59274 1.24171 0.94159 0.98492 1.04150 0.92613 0.95335 0.95346 0.92899 0.92908 0.83680 0.84726 0.82567 0.73616 0.84455 0.87092 0.87106 0.87819 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.53 -13.85 9.11 -34.44 -0.31 -14.17 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.07 1.25 4.70 37.16 0.17 1.42 16 11 O -0.32 -5.49 9.39 -19.66 -0.18 -5.68 16 12 C 0.07 1.09 6.72 -38.91 -0.26 0.83 16 13 C -0.15 -2.04 9.14 -39.17 -0.36 -2.40 16 14 C -0.16 -1.84 10.10 -39.44 -0.40 -2.24 16 15 C 0.07 0.95 11.17 -17.55 -0.20 0.75 16 16 N -0.44 -6.93 7.88 -12.22 -0.10 -7.02 16 17 C 0.32 5.00 7.45 -154.43 -1.15 3.85 16 18 N -0.65 -8.44 5.39 -11.29 -0.06 -8.50 16 19 C 0.52 6.41 7.29 -10.99 -0.08 6.33 16 20 O -0.47 -7.38 14.20 5.56 0.08 -7.31 16 21 C -0.12 -1.04 3.81 -91.73 -0.35 -1.39 16 22 C -0.07 -0.63 7.49 37.18 0.28 -0.35 16 23 S -0.28 -2.83 24.80 -107.50 -2.67 -5.50 16 24 C -0.06 -0.55 7.18 37.18 0.27 -0.28 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 29 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 30 H 0.15 1.85 6.44 -52.49 -0.34 1.51 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.43 4.88 8.04 -40.82 -0.33 4.55 16 34 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.12 1.15 7.57 -51.93 -0.39 0.75 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -31.46 339.20 -9.52 -40.98 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.78 Total: 2.54 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.63 Total: -5.57 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.58 Total: -39.92 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.11 Total: -12.98 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -2.67 Total: -5.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.46 -9.52 -40.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601032366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.166 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds