Wall clock time and date at job start Fri Apr 10 2020 22:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34919 * 119.99661 * 2 1 4 4 C 1.47176 * 120.00226 * 353.37614 * 3 2 1 5 5 C 1.39879 * 120.16068 * 327.30961 * 4 3 2 6 6 C 1.37868 * 119.84591 * 179.77190 * 5 4 3 7 7 C 1.38405 * 120.18978 * 0.48731 * 6 5 4 8 8 C 1.38499 * 120.33446 * 359.78713 * 7 6 5 9 9 Cl 1.73595 * 119.92544 * 179.97438 * 8 7 6 10 10 C 1.38021 * 120.14372 * 359.95761 * 8 7 6 11 11 C 1.46240 * 120.00225 * 180.02562 * 2 1 3 12 12 O 1.21619 * 119.99970 * 179.97438 * 11 2 1 13 13 O 1.34900 * 119.99746 * 359.97438 * 11 2 1 14 14 C 1.42904 * 116.99888 * 179.97438 * 13 11 2 15 15 C 1.53001 * 109.47434 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47356 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.46934 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00341 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99741 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00233 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47005 * 60.00620 * 21 19 17 23 23 H 1.48508 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47328 * 300.00274 * 21 19 17 25 25 H 1.09004 * 109.47004 * 92.79570 * 1 2 3 26 26 H 1.09002 * 109.46944 * 212.79049 * 1 2 3 27 27 H 1.08995 * 109.46981 * 332.79021 * 1 2 3 28 28 H 1.08008 * 119.99436 * 173.08740 * 3 2 1 29 29 H 1.08001 * 120.07354 * 0.02562 * 5 4 3 30 30 H 1.08002 * 119.90499 * 180.23541 * 6 5 4 31 31 H 1.08003 * 119.83159 * 179.76453 * 7 6 5 32 32 H 1.08002 * 120.09479 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.47171 * 300.00379 * 14 13 11 34 34 H 1.08998 * 109.46646 * 60.00220 * 14 13 11 35 35 H 1.09003 * 109.46883 * 300.00656 * 15 14 13 36 36 H 1.09005 * 109.46694 * 59.99862 * 15 14 13 37 37 H 1.09002 * 109.47039 * 300.00359 * 16 15 14 38 38 H 1.08998 * 109.46855 * 60.00247 * 16 15 14 39 39 H 0.97004 * 120.00275 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1815 1.1685 0.0000 4 6 1.4530 2.4388 -0.1470 5 6 0.2918 2.4971 -0.9248 6 6 -0.3881 3.6894 -1.0542 7 6 0.0806 4.8297 -0.4254 8 6 1.2326 4.7821 0.3419 9 17 1.8113 6.2189 1.1255 10 6 1.9213 3.5946 0.4852 11 6 2.2383 -1.2664 -0.0006 12 8 3.4544 -1.2664 -0.0010 13 8 1.5638 -2.4347 -0.0006 14 6 2.3421 -3.6332 -0.0017 15 6 1.4101 -4.8466 -0.0009 16 6 2.2435 -6.1298 -0.0015 17 6 1.3255 -7.3248 -0.0013 18 1 0.2547 -7.1834 -0.0012 19 6 1.8525 -8.5989 -0.0023 20 7 3.1563 -8.7712 -0.0028 21 14 0.7146 -10.0803 -0.0013 22 1 -0.1434 -10.0462 -1.2128 23 1 1.5234 -11.3258 -0.0020 24 1 -0.1407 -10.0468 1.2121 25 1 -0.3633 -0.0501 -1.0265 26 1 -0.3633 -0.8639 0.5566 27 1 -0.3633 0.9139 0.4699 28 1 3.2557 1.1718 0.1126 29 1 -0.0734 1.6091 -1.4194 30 1 -1.2869 3.7346 -1.6514 31 1 -0.4546 5.7616 -0.5338 32 1 2.8193 3.5582 1.0840 33 1 2.9703 -3.6576 -0.8922 34 1 2.9715 -3.6584 0.8878 35 1 0.7823 -4.8219 0.8898 36 1 0.7803 -4.8215 -0.8902 37 1 2.8716 -6.1546 -0.8919 38 1 2.8729 -6.1545 0.8881 39 1 3.5271 -9.6676 -0.0039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758879617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:15 Heat of formation + Delta-G solvation = -70.422754 kcal Electronic energy + Delta-G solvation = -21131.744383 eV Core-core repulsion = 17644.009879 eV Total energy + Delta-G solvation = -3487.734504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51843 -39.79493 -37.15301 -36.68752 -35.29737 -33.97857 -31.86399 -31.60405 -30.64676 -27.68680 -27.21113 -24.70626 -23.14340 -22.98708 -21.77893 -20.41453 -19.26032 -17.36046 -17.14064 -16.82223 -16.40919 -16.18339 -16.04015 -15.44952 -14.52874 -14.47920 -14.29580 -14.01809 -13.92992 -13.53436 -13.21721 -12.83087 -12.36077 -12.21006 -12.17854 -12.01078 -11.87538 -11.73708 -11.67269 -11.32790 -10.96010 -10.71383 -10.63666 -10.44382 -10.36119 -10.23644 -9.71474 -9.51426 -9.28338 -9.17988 -8.73864 -8.38817 -6.03640 -4.06856 0.08455 0.70315 1.33405 1.65654 2.81405 2.88717 3.20743 3.32075 3.36463 3.38927 4.21312 4.29494 4.43104 4.52446 4.59030 4.66028 4.79522 4.84397 5.06118 5.32116 5.32755 5.37081 5.41916 5.57109 5.58481 5.61471 5.68029 5.71493 5.81504 5.99614 6.08054 6.14417 6.23981 6.47498 6.53221 6.82411 6.97599 7.59776 7.71074 7.87953 7.94531 8.35558 8.99149 9.57320 11.07704 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.043224 B = 0.001856 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.625447 B =15083.093641 C =15522.720650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.134 4.134 3 C -0.039 4.039 4 C -0.053 4.053 5 C -0.100 4.100 6 C -0.110 4.110 7 C -0.103 4.103 8 C -0.038 4.038 9 Cl -0.069 7.069 10 C -0.090 4.090 11 C 0.495 3.505 12 O -0.510 6.510 13 O -0.344 6.344 14 C 0.065 3.935 15 C -0.107 4.107 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 30.210 -0.754 30.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.135 4.135 3 C -0.057 4.057 4 C -0.054 4.054 5 C -0.118 4.118 6 C -0.128 4.128 7 C -0.122 4.122 8 C -0.064 4.064 9 Cl -0.040 7.040 10 C -0.108 4.108 11 C 0.341 3.659 12 O -0.400 6.400 13 O -0.260 6.260 14 C -0.008 4.008 15 C -0.145 4.145 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.206 30.139 -0.677 30.779 hybrid contribution -0.180 -0.821 0.106 0.847 sum -6.385 29.318 -0.571 30.010 Atomic orbital electron populations 1.21139 0.89907 1.03914 1.02843 1.21120 0.97049 0.89983 1.05329 1.22201 1.00231 0.89551 0.93736 1.18830 0.95532 0.92482 0.98514 1.21946 0.93678 0.99002 0.97176 1.21111 1.00371 0.91788 0.99510 1.21227 0.94800 0.99723 0.96435 1.20808 0.97230 0.88410 1.00001 1.98386 1.88482 1.37629 1.79515 1.21249 1.00094 0.90222 0.99264 1.21007 0.86108 0.85270 0.73519 1.90877 1.14861 1.88483 1.45791 1.86178 1.41939 1.14859 1.83040 1.23146 0.94881 0.80711 1.02096 1.21763 0.98387 0.92424 1.01936 1.19050 0.95142 0.89448 0.97691 1.21133 0.93048 0.90724 1.51148 0.92480 1.25034 0.95085 0.99162 0.95200 1.69956 1.10625 1.22325 1.50424 0.86601 0.80604 0.81812 0.78651 1.20188 1.21262 1.20190 0.90338 0.90042 0.90529 0.83989 0.83772 0.84537 0.84785 0.84351 0.91694 0.91704 0.92145 0.92140 0.96235 0.96232 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 7.94 36.01 0.29 -0.77 16 2 C -0.13 -1.49 5.93 -102.59 -0.61 -2.10 16 3 C -0.04 -0.38 9.36 -37.13 -0.35 -0.72 16 4 C -0.05 -0.43 5.27 -105.07 -0.55 -0.99 16 5 C -0.10 -0.69 7.59 -39.10 -0.30 -0.98 16 6 C -0.11 -0.63 10.03 -39.66 -0.40 -1.02 16 7 C -0.10 -0.65 9.82 -39.42 -0.39 -1.03 16 8 C -0.04 -0.28 6.31 -39.56 -0.25 -0.53 16 9 Cl -0.07 -0.51 28.95 -51.86 -1.50 -2.01 16 10 C -0.09 -0.70 9.57 -39.07 -0.37 -1.07 16 11 C 0.50 7.58 7.84 33.94 0.27 7.85 16 12 O -0.51 -9.12 16.02 -19.36 -0.31 -9.43 16 13 O -0.34 -5.70 9.41 -41.04 -0.39 -6.08 16 14 C 0.07 1.21 5.38 37.16 0.20 1.41 16 15 C -0.11 -2.22 5.52 -26.73 -0.15 -2.37 16 16 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 17 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 21 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.08 0.56 6.87 -51.93 -0.36 0.21 16 26 H 0.08 0.78 7.75 -51.93 -0.40 0.38 16 27 H 0.08 0.55 5.97 -51.93 -0.31 0.24 16 28 H 0.14 1.41 7.54 -52.48 -0.40 1.01 16 29 H 0.14 0.84 5.20 -52.49 -0.27 0.57 16 30 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 31 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 34 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -31.63 351.01 -9.44 -41.07 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -5.08 Total: -3.90 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -3.16 Total: -15.35 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.70 Total: -15.51 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.63 -9.44 -41.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758879617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.352 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds