Wall clock time and date at job start Fri Apr 10 2020 22:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34919 * 119.99661 * 2 1 4 4 C 1.47176 * 120.00226 * 353.37614 * 3 2 1 5 5 C 1.39879 * 120.16068 * 327.30961 * 4 3 2 6 6 C 1.37868 * 119.84591 * 179.77190 * 5 4 3 7 7 C 1.38405 * 120.18978 * 0.48731 * 6 5 4 8 8 C 1.38499 * 120.33446 * 359.78713 * 7 6 5 9 9 Cl 1.73595 * 119.92544 * 179.97438 * 8 7 6 10 10 C 1.38021 * 120.14372 * 359.95761 * 8 7 6 11 11 C 1.46240 * 120.00225 * 180.02562 * 2 1 3 12 12 O 1.21619 * 119.99970 * 179.97438 * 11 2 1 13 13 O 1.34900 * 119.99746 * 359.97438 * 11 2 1 14 14 C 1.42904 * 116.99888 * 179.97438 * 13 11 2 15 15 C 1.53001 * 109.47434 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47356 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.46934 * 180.02562 * 16 15 14 18 18 H 1.08005 * 120.00341 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99741 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00233 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47005 * 60.00620 * 21 19 17 23 23 H 1.48508 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47328 * 300.00274 * 21 19 17 25 25 H 1.09004 * 109.47004 * 92.79570 * 1 2 3 26 26 H 1.09002 * 109.46944 * 212.79049 * 1 2 3 27 27 H 1.08995 * 109.46981 * 332.79021 * 1 2 3 28 28 H 1.08008 * 119.99436 * 173.08740 * 3 2 1 29 29 H 1.08001 * 120.07354 * 0.02562 * 5 4 3 30 30 H 1.08002 * 119.90499 * 180.23541 * 6 5 4 31 31 H 1.08003 * 119.83159 * 179.76453 * 7 6 5 32 32 H 1.08002 * 120.09479 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.47171 * 300.00379 * 14 13 11 34 34 H 1.08998 * 109.46646 * 60.00220 * 14 13 11 35 35 H 1.09003 * 109.46883 * 300.00656 * 15 14 13 36 36 H 1.09005 * 109.46694 * 59.99862 * 15 14 13 37 37 H 1.09002 * 109.47039 * 300.00359 * 16 15 14 38 38 H 1.08998 * 109.46855 * 60.00247 * 16 15 14 39 39 H 0.97004 * 120.00275 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1815 1.1685 0.0000 4 6 1.4530 2.4388 -0.1470 5 6 0.2918 2.4971 -0.9248 6 6 -0.3881 3.6894 -1.0542 7 6 0.0806 4.8297 -0.4254 8 6 1.2326 4.7821 0.3419 9 17 1.8113 6.2189 1.1255 10 6 1.9213 3.5946 0.4852 11 6 2.2383 -1.2664 -0.0006 12 8 3.4544 -1.2664 -0.0010 13 8 1.5638 -2.4347 -0.0006 14 6 2.3421 -3.6332 -0.0017 15 6 1.4101 -4.8466 -0.0009 16 6 2.2435 -6.1298 -0.0015 17 6 1.3255 -7.3248 -0.0013 18 1 0.2547 -7.1834 -0.0012 19 6 1.8525 -8.5989 -0.0023 20 7 3.1563 -8.7712 -0.0028 21 14 0.7146 -10.0803 -0.0013 22 1 -0.1434 -10.0462 -1.2128 23 1 1.5234 -11.3258 -0.0020 24 1 -0.1407 -10.0468 1.2121 25 1 -0.3633 -0.0501 -1.0265 26 1 -0.3633 -0.8639 0.5566 27 1 -0.3633 0.9139 0.4699 28 1 3.2557 1.1718 0.1126 29 1 -0.0734 1.6091 -1.4194 30 1 -1.2869 3.7346 -1.6514 31 1 -0.4546 5.7616 -0.5338 32 1 2.8193 3.5582 1.0840 33 1 2.9703 -3.6576 -0.8922 34 1 2.9715 -3.6584 0.8878 35 1 0.7823 -4.8219 0.8898 36 1 0.7803 -4.8215 -0.8902 37 1 2.8716 -6.1546 -0.8919 38 1 2.8729 -6.1545 0.8881 39 1 3.5271 -9.6676 -0.0039 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758879617.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:15 Heat of formation + Delta-G solvation = -85.230414 kcal Electronic energy + Delta-G solvation = -21132.386492 eV Core-core repulsion = 17644.009879 eV Total energy + Delta-G solvation = -3488.376613 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.097 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69367 -40.46211 -38.16708 -37.56647 -36.11010 -35.91816 -33.67708 -32.29004 -31.30540 -29.06033 -28.35201 -26.03307 -24.58613 -23.51224 -22.73346 -22.19930 -20.25659 -18.74892 -18.29883 -17.82093 -17.71825 -17.57377 -16.65703 -16.48702 -16.15212 -15.71630 -15.13293 -14.96858 -14.64559 -14.46036 -14.16740 -14.06501 -13.84100 -13.72404 -13.50041 -12.97912 -12.80373 -12.60660 -12.53645 -12.42599 -12.32987 -12.31305 -12.07150 -11.89424 -11.76916 -11.43868 -11.39808 -11.24110 -10.89758 -10.56591 -9.82113 -9.39570 -8.21314 -6.33123 -0.65371 0.18144 0.58461 1.10877 1.41762 1.45276 1.52952 1.65565 1.79482 2.41828 2.64311 3.12368 3.43009 3.74629 3.79298 3.93188 3.98373 4.04662 4.05506 4.13580 4.32565 4.39182 4.46790 4.68956 4.77826 4.79188 4.82738 4.87331 4.94519 5.02101 5.07831 5.17777 5.28577 5.37441 5.44725 5.47174 5.50161 5.63437 5.74849 5.79977 6.18916 6.62140 6.82659 7.36342 8.90645 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.043224 B = 0.001856 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.625447 B =15083.093641 C =15522.720650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.155 4.155 3 C -0.012 4.012 4 C -0.071 4.071 5 C -0.098 4.098 6 C -0.105 4.105 7 C -0.099 4.099 8 C -0.051 4.051 9 Cl -0.073 7.073 10 C -0.095 4.095 11 C 0.494 3.506 12 O -0.545 6.545 13 O -0.342 6.342 14 C 0.076 3.924 15 C -0.092 4.092 16 C 0.025 3.975 17 C -0.544 4.544 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.266 1.266 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.134 0.866 29 H 0.157 0.843 30 H 0.166 0.834 31 H 0.153 0.847 32 H 0.140 0.860 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.069 0.931 37 H -0.004 1.004 38 H -0.005 1.005 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 31.558 -1.296 32.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.156 4.156 3 C -0.031 4.031 4 C -0.071 4.071 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.077 4.077 9 Cl -0.044 7.044 10 C -0.114 4.114 11 C 0.342 3.658 12 O -0.437 6.437 13 O -0.258 6.258 14 C 0.001 3.999 15 C -0.129 4.129 16 C -0.012 4.012 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.574 5.574 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.190 1.190 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.152 0.848 29 H 0.174 0.826 30 H 0.184 0.816 31 H 0.171 0.829 32 H 0.158 0.842 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.836 31.512 -1.218 32.750 hybrid contribution 0.677 -1.057 0.264 1.283 sum -8.159 30.455 -0.953 31.544 Atomic orbital electron populations 1.21163 0.87791 1.04225 1.03957 1.21067 0.98262 0.87980 1.08272 1.22292 1.00026 0.90034 0.90741 1.18758 0.96557 0.91583 1.00212 1.22160 0.92859 1.00076 0.96434 1.21448 1.00946 0.90858 0.99056 1.21555 0.94082 1.00841 0.95233 1.20936 0.97927 0.88171 1.00705 1.98386 1.88628 1.37702 1.79673 1.21323 1.00322 0.90405 0.99360 1.21771 0.86035 0.85781 0.72244 1.90859 1.16392 1.88747 1.47752 1.86159 1.41519 1.14735 1.83383 1.22758 0.94234 0.81288 1.01571 1.21454 0.97841 0.90968 1.02664 1.18941 0.95018 0.91863 0.95395 1.21597 0.93835 0.91759 1.50960 0.91539 1.26034 0.96724 1.02669 0.94599 1.70099 1.12718 1.23173 1.51384 0.85427 0.78433 0.77435 0.79311 1.18966 1.20996 1.19035 0.88644 0.91141 0.88884 0.84821 0.82563 0.81600 0.82926 0.84197 0.92252 0.92393 0.91388 0.91254 0.98548 0.98616 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 7.94 71.24 0.57 -1.21 16 2 C -0.15 -3.34 5.93 -18.55 -0.11 -3.45 16 3 C -0.01 -0.23 9.36 23.86 0.22 -0.01 16 4 C -0.07 -1.04 5.27 -20.15 -0.11 -1.14 16 5 C -0.10 -1.05 7.59 22.58 0.17 -0.88 16 6 C -0.11 -0.82 10.03 22.22 0.22 -0.60 16 7 C -0.10 -0.94 9.82 22.37 0.22 -0.72 16 8 C -0.05 -0.67 6.31 22.28 0.14 -0.53 16 9 Cl -0.07 -0.98 28.95 -2.72 -0.08 -1.06 16 10 C -0.10 -1.37 9.57 22.60 0.22 -1.15 16 11 C 0.49 15.24 7.84 69.90 0.55 15.79 16 12 O -0.54 -20.09 16.02 19.44 0.31 -19.78 16 13 O -0.34 -11.32 9.41 -58.14 -0.55 -11.87 16 14 C 0.08 2.86 5.38 71.98 0.39 3.25 16 15 C -0.09 -3.81 5.52 30.59 0.17 -3.64 16 16 C 0.03 1.33 4.97 29.85 0.15 1.47 16 17 C -0.54 -30.78 9.11 25.60 0.23 -30.54 16 18 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 19 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 20 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 21 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H 0.10 1.10 6.87 -2.38 -0.02 1.09 16 26 H 0.07 1.25 7.75 -2.39 -0.02 1.23 16 27 H 0.09 1.10 5.97 -2.39 -0.01 1.09 16 28 H 0.13 2.69 7.54 -2.91 -0.02 2.67 16 29 H 0.16 1.29 5.20 -2.91 -0.02 1.28 16 30 H 0.17 0.34 8.06 -2.91 -0.02 0.31 16 31 H 0.15 0.87 8.06 -2.91 -0.02 0.84 16 32 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 34 H 0.06 2.25 8.13 -2.39 -0.02 2.23 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -68.90 351.01 6.54 -62.36 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: 1.05 Total: 4.19 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 3.49 Total: -23.04 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.28 Total: -56.76 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.24 Total: -31.65 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -68.90 6.54 -62.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758879617.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.869 kcal (2) G-P(sol) polarization free energy of solvation -68.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds