Wall clock time and date at job start Fri Apr 10 2020 22:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.46985 * 2 1 4 4 C 1.34780 * 120.00185 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99687 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00237 * 180.02562 * 4 3 2 7 7 N 1.46498 * 109.46699 * 179.97438 * 6 4 3 8 8 C 1.34783 * 119.99450 * 179.97438 * 7 6 4 9 9 O 1.21606 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.47433 * 119.99777 * 179.97438 * 8 7 6 11 11 C 1.39678 * 120.21285 * 359.97438 * 10 8 7 12 12 C 1.37809 * 119.93418 * 180.02562 * 11 10 8 13 13 C 1.38660 * 120.38295 * 0.02562 * 12 11 10 14 14 C 1.37910 * 120.43889 * 0.02562 * 13 12 11 15 15 C 1.39110 * 120.04977 * 359.97438 * 14 13 12 16 16 S 1.76195 * 120.19106 * 180.02562 * 15 14 13 17 17 C 1.76205 * 99.99901 * 6.85682 * 16 15 14 18 18 H 1.08005 * 119.99976 * 5.65159 * 17 16 15 19 19 C 1.38804 * 120.00248 * 185.65626 * 17 16 15 20 20 N 1.31558 * 119.99610 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00279 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47171 * 59.99489 * 21 19 17 23 23 H 1.48493 * 109.47448 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46888 * 299.99982 * 21 19 17 25 25 H 1.09000 * 109.47355 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47151 * 299.99736 * 1 2 3 27 27 H 1.08995 * 109.47394 * 59.99705 * 1 2 3 28 28 H 1.09005 * 109.47151 * 240.00264 * 2 1 3 29 29 H 1.08995 * 109.47394 * 120.00295 * 2 1 3 30 30 H 0.97003 * 120.00285 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.47436 * 59.99824 * 6 4 3 32 32 H 1.09003 * 109.46802 * 299.99460 * 6 4 3 33 33 H 0.97003 * 120.00826 * 359.97438 * 7 6 4 34 34 H 1.07994 * 120.03669 * 0.27820 * 11 10 8 35 35 H 1.08006 * 119.80802 * 179.97438 * 12 11 10 36 36 H 1.08007 * 119.77539 * 180.02562 * 13 12 11 37 37 H 1.07997 * 119.97290 * 179.97438 * 14 13 12 38 38 H 0.96997 * 119.99773 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0484 0.0001 7 7 5.3106 3.0483 -0.0001 8 6 5.9845 4.2156 -0.0001 9 8 5.3765 5.2687 0.0004 10 6 7.4588 4.2156 0.0003 11 6 8.1617 3.0085 0.0014 12 6 9.5398 3.0152 0.0023 13 6 10.2353 4.2148 0.0028 14 6 9.5571 5.4156 0.0028 15 6 8.1661 5.4300 0.0019 16 16 7.2958 6.9620 0.0013 17 6 8.6429 8.0790 -0.2050 18 1 9.6385 7.6981 -0.3785 19 6 8.4246 9.4484 -0.1443 20 7 7.2117 9.9124 0.0667 21 14 9.8525 10.6326 -0.3637 22 1 10.4661 10.4259 -1.7001 23 1 9.3586 12.0289 -0.2569 24 1 10.8680 10.3841 0.6910 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3879 2.1185 -0.0004 31 1 3.4828 3.5617 0.8905 32 1 3.4819 3.5627 -0.8895 33 1 5.7957 2.2083 -0.0001 34 1 7.6258 2.0709 -0.0027 35 1 10.0812 2.0807 0.0035 36 1 11.3153 4.2086 0.0031 37 1 10.1063 6.3455 0.0036 38 1 7.0592 10.8693 0.1094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078680832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:35 Heat of formation + Delta-G solvation = -46.988854 kcal Electronic energy + Delta-G solvation = -21871.310637 eV Core-core repulsion = 18418.928761 eV Total energy + Delta-G solvation = -3452.381877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21254 -39.16141 -37.39923 -35.68590 -34.14728 -32.74074 -31.37075 -30.56563 -30.24140 -27.48908 -25.80872 -23.54506 -22.71171 -21.87923 -20.87667 -20.12325 -18.51889 -17.46398 -16.69805 -16.44927 -16.16041 -15.67505 -15.32549 -15.09436 -15.01742 -14.43891 -14.02301 -13.87181 -13.73762 -13.39508 -12.96321 -12.89833 -12.69127 -12.66441 -12.24041 -11.91795 -11.77588 -11.55789 -11.19458 -11.17230 -10.94006 -10.32609 -10.16784 -9.83272 -9.66657 -9.48534 -9.44385 -8.86405 -8.70624 -8.30549 -8.07514 -6.51798 -6.45015 -4.15312 1.54927 2.05875 2.34549 2.71286 3.11788 3.14994 3.18960 3.43245 3.50720 3.62329 4.07948 4.42102 4.51139 4.65026 4.69648 4.94326 4.96021 5.14768 5.26416 5.32602 5.40763 5.43027 5.50261 5.51572 5.63848 5.64436 5.97217 6.07890 6.15486 6.41660 6.60056 6.64209 6.88939 7.05505 7.14151 7.16235 7.46398 7.61970 7.86040 7.91721 8.17304 8.74840 9.01240 10.58325 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.003161 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.670861 B = 8855.084412 C =10178.900793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.730 5.730 4 C 0.511 3.489 5 O -0.537 6.537 6 C 0.104 3.896 7 N -0.728 5.728 8 C 0.556 3.444 9 O -0.511 6.511 10 C -0.177 4.177 11 C -0.059 4.059 12 C -0.186 4.186 13 C -0.076 4.076 14 C -0.154 4.154 15 C -0.055 4.055 16 S 0.183 5.817 17 C -0.595 4.595 18 H 0.090 0.910 19 C 0.084 3.916 20 N -0.859 5.859 21 Si 0.919 3.081 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.270 1.270 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.405 0.595 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.407 0.593 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 -16.485 0.049 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.384 5.384 4 C 0.297 3.703 5 O -0.414 6.414 6 C -0.023 4.023 7 N -0.387 5.387 8 C 0.345 3.655 9 O -0.388 6.388 10 C -0.192 4.192 11 C -0.079 4.079 12 C -0.211 4.211 13 C -0.098 4.098 14 C -0.179 4.179 15 C -0.175 4.175 16 S 0.447 5.553 17 C -0.742 4.742 18 H 0.108 0.892 19 C -0.127 4.127 20 N -0.492 5.492 21 Si 0.744 3.256 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.195 1.195 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.239 0.761 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.245 0.755 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.157 0.843 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.414 -15.571 0.176 18.734 hybrid contribution 2.109 0.269 -0.226 2.138 sum -8.305 -15.302 -0.051 17.411 Atomic orbital electron populations 1.22012 0.94290 1.03308 1.02726 1.21316 0.94331 0.82765 1.02547 1.45966 1.06997 1.09297 1.76098 1.20744 0.82497 0.91603 0.75479 1.90695 1.55201 1.46207 1.49295 1.20944 0.83557 0.92947 1.04891 1.45584 1.04768 1.09908 1.78420 1.18299 0.87652 0.82905 0.76606 1.90782 1.69190 1.30137 1.48683 1.19020 0.91129 0.93082 1.15978 1.20969 0.94493 0.95731 0.96724 1.20656 0.93818 0.97427 1.09151 1.21099 0.98982 0.92585 0.97103 1.21425 0.93348 0.98810 1.04333 1.23072 0.97198 1.00402 0.96828 1.84700 1.07269 0.87840 1.75509 1.24017 0.98616 0.94421 1.57129 0.89187 1.25092 0.96797 0.97698 0.93155 1.69967 1.20395 1.15089 1.43710 0.86203 0.81176 0.78880 0.79327 1.19486 1.20578 1.19491 0.90744 0.91826 0.91821 0.91385 0.91382 0.76083 0.88406 0.88402 0.75500 0.86890 0.86990 0.86977 0.84345 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.03 37.16 0.37 -0.32 16 2 C 0.11 0.79 6.39 -4.05 -0.03 0.76 16 3 N -0.73 -5.69 5.56 -60.30 -0.33 -6.02 16 4 C 0.51 5.77 7.90 -10.98 -0.09 5.68 16 5 O -0.54 -7.83 15.67 5.55 0.09 -7.74 16 6 C 0.10 1.27 6.15 -5.19 -0.03 1.24 16 7 N -0.73 -11.22 5.48 -62.56 -0.34 -11.56 16 8 C 0.56 10.94 7.75 -12.51 -0.10 10.84 16 9 O -0.51 -11.69 13.77 5.27 0.07 -11.62 16 10 C -0.18 -3.60 5.89 -104.75 -0.62 -4.22 16 11 C -0.06 -1.00 9.53 -39.20 -0.37 -1.37 16 12 C -0.19 -3.00 10.02 -39.58 -0.40 -3.40 16 13 C -0.08 -1.32 10.03 -39.55 -0.40 -1.72 16 14 C -0.15 -3.26 9.22 -39.38 -0.36 -3.62 16 15 C -0.06 -1.27 6.14 -38.39 -0.24 -1.51 16 16 S 0.18 4.89 18.56 -107.50 -2.00 2.90 16 17 C -0.60 -16.42 9.00 30.94 0.28 -16.14 16 18 H 0.09 2.35 4.98 -52.48 -0.26 2.09 16 19 C 0.08 2.29 5.49 -17.46 -0.10 2.19 16 20 N -0.86 -24.68 13.22 55.49 0.73 -23.94 16 21 Si 0.92 20.67 29.55 -169.99 -5.02 15.64 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.40 2.09 8.47 -40.82 -0.35 1.74 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.41 5.89 5.47 -40.82 -0.22 5.66 16 34 H 0.11 1.58 6.40 -52.49 -0.34 1.24 16 35 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.14 3.03 5.04 -52.49 -0.26 2.76 16 38 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -33.76 338.45 -8.14 -41.90 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.37 Total: 6.93 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.07 Total: -11.59 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.06 Total: -41.53 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.16 Total: -19.35 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -2.00 Total: 2.90 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.76 -8.14 -41.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078680832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.089 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds