Wall clock time and date at job start Fri Apr 10 2020 22:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.46985 * 2 1 4 4 C 1.34780 * 120.00185 * 180.02562 * 3 2 1 5 5 O 1.21287 * 119.99687 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00237 * 180.02562 * 4 3 2 7 7 N 1.46498 * 109.46699 * 179.97438 * 6 4 3 8 8 C 1.34783 * 119.99450 * 179.97438 * 7 6 4 9 9 O 1.21606 * 120.00135 * 0.02562 * 8 7 6 10 10 C 1.47433 * 119.99777 * 179.97438 * 8 7 6 11 11 C 1.39678 * 120.21285 * 359.97438 * 10 8 7 12 12 C 1.37809 * 119.93418 * 180.02562 * 11 10 8 13 13 C 1.38660 * 120.38295 * 0.02562 * 12 11 10 14 14 C 1.37910 * 120.43889 * 0.02562 * 13 12 11 15 15 C 1.39110 * 120.04977 * 359.97438 * 14 13 12 16 16 S 1.76195 * 120.19106 * 180.02562 * 15 14 13 17 17 C 1.76205 * 99.99901 * 6.85682 * 16 15 14 18 18 H 1.08005 * 119.99976 * 5.65159 * 17 16 15 19 19 C 1.38804 * 120.00248 * 185.65626 * 17 16 15 20 20 N 1.31558 * 119.99610 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00279 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47171 * 59.99489 * 21 19 17 23 23 H 1.48493 * 109.47448 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46888 * 299.99982 * 21 19 17 25 25 H 1.09000 * 109.47355 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47151 * 299.99736 * 1 2 3 27 27 H 1.08995 * 109.47394 * 59.99705 * 1 2 3 28 28 H 1.09005 * 109.47151 * 240.00264 * 2 1 3 29 29 H 1.08995 * 109.47394 * 120.00295 * 2 1 3 30 30 H 0.97003 * 120.00285 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.47436 * 59.99824 * 6 4 3 32 32 H 1.09003 * 109.46802 * 299.99460 * 6 4 3 33 33 H 0.97003 * 120.00826 * 359.97438 * 7 6 4 34 34 H 1.07994 * 120.03669 * 0.27820 * 11 10 8 35 35 H 1.08006 * 119.80802 * 179.97438 * 12 11 10 36 36 H 1.08007 * 119.77539 * 180.02562 * 13 12 11 37 37 H 1.07997 * 119.97290 * 179.97438 * 14 13 12 38 38 H 0.96997 * 119.99773 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0484 0.0001 7 7 5.3106 3.0483 -0.0001 8 6 5.9845 4.2156 -0.0001 9 8 5.3765 5.2687 0.0004 10 6 7.4588 4.2156 0.0003 11 6 8.1617 3.0085 0.0014 12 6 9.5398 3.0152 0.0023 13 6 10.2353 4.2148 0.0028 14 6 9.5571 5.4156 0.0028 15 6 8.1661 5.4300 0.0019 16 16 7.2958 6.9620 0.0013 17 6 8.6429 8.0790 -0.2050 18 1 9.6385 7.6981 -0.3785 19 6 8.4246 9.4484 -0.1443 20 7 7.2117 9.9124 0.0667 21 14 9.8525 10.6326 -0.3637 22 1 10.4661 10.4259 -1.7001 23 1 9.3586 12.0289 -0.2569 24 1 10.8680 10.3841 0.6910 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3879 2.1185 -0.0004 31 1 3.4828 3.5617 0.8905 32 1 3.4819 3.5627 -0.8895 33 1 5.7957 2.2083 -0.0001 34 1 7.6258 2.0709 -0.0027 35 1 10.0812 2.0807 0.0035 36 1 11.3153 4.2086 0.0031 37 1 10.1063 6.3455 0.0036 38 1 7.0592 10.8693 0.1094 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078680832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:34 Heat of formation + Delta-G solvation = -71.980181 kcal Electronic energy + Delta-G solvation = -21872.394343 eV Core-core repulsion = 18418.928761 eV Total energy + Delta-G solvation = -3453.465582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.36125 -40.46846 -38.92088 -36.47120 -35.48650 -34.74777 -32.49331 -31.79506 -31.59725 -28.56977 -27.81982 -24.72172 -23.65992 -23.32441 -21.81151 -21.58960 -20.10861 -19.05925 -17.82264 -17.58269 -17.22313 -17.07110 -16.93845 -16.49990 -16.02359 -15.77808 -15.42185 -15.30527 -15.07415 -14.69557 -14.56088 -14.09048 -13.86413 -13.33406 -13.33112 -13.28208 -12.95724 -12.89158 -12.68507 -12.55668 -12.36775 -12.05875 -11.52685 -11.40765 -11.30679 -11.12766 -10.42224 -10.29364 -10.12757 -9.94060 -9.78574 -8.45386 -8.43675 -6.22347 0.01652 0.53152 1.28123 1.39438 1.42951 1.45079 1.64127 1.78150 1.98377 2.22308 2.47313 2.88551 3.03527 3.25840 3.61547 3.93272 4.01068 4.14741 4.22423 4.26695 4.34370 4.39019 4.53531 4.61327 4.63096 4.85534 4.93039 5.07218 5.10065 5.27673 5.33015 5.36286 5.39305 5.46956 5.56301 5.67132 6.09961 6.16754 6.39439 6.53162 6.97544 7.06601 7.27190 8.61642 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.003161 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.670861 B = 8855.084412 C =10178.900793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.111 3.889 3 N -0.713 5.713 4 C 0.516 3.484 5 O -0.571 6.571 6 C 0.100 3.900 7 N -0.712 5.712 8 C 0.552 3.448 9 O -0.548 6.548 10 C -0.183 4.183 11 C -0.056 4.056 12 C -0.159 4.159 13 C -0.067 4.067 14 C -0.174 4.174 15 C -0.070 4.070 16 S 0.072 5.928 17 C -0.604 4.604 18 H 0.094 0.906 19 C 0.025 3.975 20 N -0.904 5.904 21 Si 0.992 3.008 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.260 1.260 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.419 0.581 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.413 0.587 34 H 0.150 0.850 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.122 0.878 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 -19.684 -0.088 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.013 4.013 3 N -0.366 5.366 4 C 0.302 3.698 5 O -0.451 6.451 6 C -0.027 4.027 7 N -0.369 5.369 8 C 0.341 3.659 9 O -0.428 6.428 10 C -0.196 4.196 11 C -0.076 4.076 12 C -0.181 4.181 13 C -0.088 4.088 14 C -0.199 4.199 15 C -0.189 4.189 16 S 0.331 5.669 17 C -0.750 4.750 18 H 0.112 0.888 19 C -0.180 4.180 20 N -0.539 5.539 21 Si 0.813 3.187 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.185 1.185 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.256 0.744 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.253 0.747 34 H 0.168 0.832 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.140 0.860 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.292 -18.891 0.039 21.052 hybrid contribution 1.746 0.811 -0.178 1.933 sum -7.546 -18.080 -0.139 19.592 Atomic orbital electron populations 1.21972 0.91905 1.04286 1.03352 1.21444 0.96212 0.81726 1.01869 1.45902 1.06029 1.10530 1.74162 1.20489 0.83393 0.90477 0.75412 1.90678 1.56260 1.46768 1.51398 1.21137 0.81607 0.94188 1.05786 1.45419 1.06255 1.08743 1.76473 1.18378 0.87779 0.83402 0.76346 1.90783 1.69782 1.31769 1.50479 1.19404 0.91948 0.93481 1.14785 1.21413 0.95347 0.95593 0.95276 1.21305 0.93514 0.98858 1.04474 1.21546 1.01047 0.91400 0.94798 1.21470 0.92680 1.00058 1.05709 1.22987 0.97991 0.99009 0.98873 1.84820 1.09789 0.91541 1.80758 1.24225 0.98514 0.94973 1.57312 0.88795 1.26125 0.99621 0.99433 0.92854 1.70115 1.22670 1.15305 1.45796 0.85098 0.77576 0.76436 0.79574 1.18701 1.19860 1.18494 0.89616 0.91182 0.91179 0.92090 0.92083 0.74405 0.87569 0.87573 0.74682 0.83211 0.81919 0.83071 0.86001 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 10.03 71.98 0.72 -0.23 16 2 C 0.11 1.34 6.39 86.38 0.55 1.89 16 3 N -0.71 -9.86 5.56 -463.06 -2.57 -12.43 16 4 C 0.52 10.92 7.90 87.66 0.69 11.61 16 5 O -0.57 -15.76 15.67 -3.05 -0.05 -15.81 16 6 C 0.10 2.34 6.15 85.63 0.53 2.87 16 7 N -0.71 -21.18 5.48 -470.09 -2.58 -23.76 16 8 C 0.55 21.94 7.75 86.66 0.67 22.61 16 9 O -0.55 -26.35 13.77 -4.05 -0.06 -26.41 16 10 C -0.18 -7.34 5.89 -19.95 -0.12 -7.46 16 11 C -0.06 -1.70 9.53 22.52 0.21 -1.48 16 12 C -0.16 -4.25 10.02 22.27 0.22 -4.03 16 13 C -0.07 -2.09 10.03 22.29 0.22 -1.86 16 14 C -0.17 -7.33 9.22 22.40 0.21 -7.12 16 15 C -0.07 -3.35 6.14 23.04 0.14 -3.20 16 16 S 0.07 4.14 18.56 -56.49 -1.05 3.09 16 17 C -0.60 -35.17 9.00 67.96 0.61 -34.56 16 18 H 0.09 5.16 4.98 -2.91 -0.01 5.14 16 19 C 0.03 1.46 5.49 84.87 0.47 1.92 16 20 N -0.90 -54.97 13.22 21.65 0.29 -54.69 16 21 Si 0.99 43.76 29.55 68.60 2.03 45.78 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 27 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.42 3.48 8.47 -92.71 -0.79 2.69 16 31 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.41 11.06 5.47 -92.71 -0.51 10.56 16 34 H 0.15 3.44 6.40 -2.91 -0.02 3.42 16 35 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.12 5.48 5.04 -2.91 -0.01 5.47 16 38 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -79.91 338.45 0.98 -78.94 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.17 Total: 24.32 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 5.13 Total: -19.05 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -4.86 Total: -90.87 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -0.10 Total: -42.22 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.05 Total: 3.09 kcal Total: -79.91 0.98 -78.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078680832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.959 kcal (2) G-P(sol) polarization free energy of solvation -79.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds