Wall clock time and date at job start Fri Apr 10 2020 22:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 N 1.46502 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99389 * 273.33053 * 4 3 2 6 6 H 1.08001 * 119.99529 * 177.08716 * 5 4 3 7 7 C 1.38817 * 120.00319 * 357.08527 * 5 4 3 8 8 N 1.31621 * 119.99475 * 23.65419 * 7 5 4 9 9 Si 1.86795 * 120.00071 * 203.65391 * 7 5 4 10 10 H 1.48502 * 109.47093 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47438 * 120.00246 * 9 7 5 12 12 H 1.48504 * 109.46815 * 240.00337 * 9 7 5 13 13 S 1.65598 * 120.00205 * 93.33407 * 4 3 2 14 14 O 1.42098 * 106.40037 * 346.33059 * 13 4 3 15 15 O 1.42108 * 106.39706 * 213.41221 * 13 4 3 16 16 C 1.76202 * 107.21919 * 99.87189 * 13 4 3 17 17 C 1.38383 * 119.84427 * 116.39781 * 16 13 4 18 18 C 1.37927 * 120.14905 * 179.97438 * 17 16 13 19 19 C 1.39655 * 119.84770 * 0.02562 * 18 17 16 20 20 C 1.43200 * 120.15198 * 180.02562 * 19 18 17 21 21 N 9.85769 * 119.54296 * 344.58277 * 2 1 3 22 22 C 1.39617 * 119.69696 * 0.27463 * 19 18 17 23 23 C 1.37970 * 119.84441 * 359.46993 * 22 19 18 24 24 C 1.50698 * 119.92478 * 180.23404 * 23 22 19 25 25 H 1.08999 * 109.47383 * 300.00181 * 1 2 3 26 26 H 1.09000 * 109.47261 * 60.00853 * 1 2 3 27 27 H 1.08999 * 109.46913 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47383 * 239.99819 * 2 1 3 29 29 H 1.09000 * 109.47261 * 119.99147 * 2 1 3 30 30 H 1.08991 * 109.47453 * 59.99545 * 3 2 1 31 31 H 1.09003 * 109.46838 * 299.99889 * 3 2 1 32 32 H 0.97005 * 119.99189 * 179.97438 * 8 7 5 33 33 H 1.07997 * 119.93070 * 359.97438 * 17 16 13 34 34 H 1.07999 * 120.07590 * 179.97438 * 18 17 16 35 35 H 1.08000 * 120.07725 * 179.72550 * 22 19 18 36 36 H 1.08999 * 109.47109 * 263.19998 * 24 23 22 37 37 H 1.09004 * 109.46800 * 23.19355 * 24 23 22 38 38 H 1.08999 * 109.47633 * 143.19812 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3735 1.1831 6 1 5.2690 1.3260 1.1805 7 6 3.4978 1.3645 2.3863 8 7 2.2456 0.9605 2.4219 9 14 4.3432 1.9258 3.9545 10 1 5.7396 2.3272 3.6476 11 1 3.6091 3.0832 4.5257 12 1 4.3535 0.8123 4.9370 13 16 4.3324 1.5262 -1.4326 14 8 3.3855 1.2634 -2.4591 15 8 5.5186 0.7639 -1.2556 16 6 4.8430 3.1994 -1.6431 17 6 6.1913 3.5097 -1.6711 18 6 6.5980 4.8172 -1.8360 19 6 5.6455 5.8292 -1.9743 20 6 6.0605 7.1889 -2.1465 21 7 6.3906 8.2675 -2.2799 22 6 4.2869 5.5098 -1.9388 23 6 3.8941 4.1969 -1.7785 24 6 2.4281 3.8495 -1.7452 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8898 31 1 1.6766 1.9563 -0.8900 32 1 1.7620 0.9539 3.2628 33 1 6.9269 2.7262 -1.5636 34 1 7.6506 5.0581 -1.8573 35 1 3.5451 6.2881 -2.0408 36 1 2.0960 3.7739 -0.7098 37 1 1.8587 4.6277 -2.2535 38 1 2.2692 2.8957 -2.2483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092367495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:54 Heat of formation + Delta-G solvation = -0.016065 kcal Electronic energy + Delta-G solvation = -23948.070268 eV Core-core repulsion = 20497.725284 eV Total energy + Delta-G solvation = -3450.344984 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.38678 -36.76079 -36.48086 -36.17388 -34.75635 -32.79804 -32.25854 -31.27025 -31.21200 -27.08858 -25.84723 -24.21226 -23.64656 -21.86874 -20.52287 -18.77266 -18.25534 -17.78953 -16.68430 -16.57062 -15.69104 -14.72541 -14.39270 -14.30574 -14.17418 -13.91542 -13.72981 -13.50614 -13.35688 -13.13525 -12.94556 -12.70446 -12.38953 -12.18115 -12.08316 -11.83796 -11.59958 -11.18126 -11.13921 -11.05565 -10.99398 -10.77757 -10.58841 -10.52540 -10.43952 -10.10097 -9.91690 -9.55493 -9.10180 -8.98994 -8.66079 -8.16661 -6.51435 -3.90906 0.55924 1.42091 1.42906 2.55813 2.81709 3.08971 3.18538 3.22330 3.76421 3.78598 3.96368 4.32913 4.61060 4.80068 4.87379 4.89472 5.21604 5.33552 5.56020 5.68414 5.76121 5.93469 5.97432 6.02390 6.09116 6.16885 6.24582 6.26497 6.30708 6.45144 6.54648 6.72468 6.89520 6.91513 6.94518 7.09245 7.23017 7.35984 7.59217 7.75525 8.29006 8.68090 9.07656 10.39177 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.005990 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.731194 B = 4673.349221 C = 5419.879753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C 0.122 3.878 4 N -0.816 5.816 5 C -0.280 4.280 6 H 0.114 0.886 7 C 0.047 3.953 8 N -0.828 5.828 9 Si 0.901 3.099 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.280 1.280 13 S 2.586 3.414 14 O -0.984 6.984 15 O -0.972 6.972 16 C -0.638 4.638 17 C -0.029 4.029 18 C -0.103 4.103 19 C -0.001 4.001 20 C 0.261 3.739 21 N -0.424 5.424 22 C -0.098 4.098 23 C 0.015 3.985 24 C -0.175 4.175 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.270 0.730 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 3.519 -3.168 4.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.156 4.156 3 C -0.003 4.003 4 N -0.645 5.645 5 C -0.420 4.420 6 H 0.131 0.869 7 C -0.162 4.162 8 N -0.468 5.468 9 Si 0.726 3.274 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.206 1.206 13 S 2.679 3.321 14 O -0.973 6.973 15 O -0.962 6.962 16 C -0.716 4.716 17 C -0.048 4.048 18 C -0.124 4.124 19 C -0.004 4.004 20 C -0.054 4.054 21 N -0.100 5.100 22 C -0.119 4.119 23 C 0.014 3.986 24 C -0.231 4.231 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.165 0.835 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.397 4.605 -4.058 6.150 hybrid contribution 0.432 0.850 1.121 1.472 sum 0.036 5.455 -2.937 6.196 Atomic orbital electron populations 1.21586 0.97327 0.99989 1.00558 1.21763 0.93852 0.98176 1.01840 1.21713 0.78976 0.97851 1.01740 1.53790 1.13239 1.76279 1.21155 1.19586 0.92930 1.46792 0.82694 0.86889 1.25236 0.95703 0.96142 0.99138 1.70218 1.10712 1.38646 1.27231 0.86288 0.80204 0.78995 0.81874 1.19007 1.20426 1.20594 1.08043 0.73201 0.76750 0.74152 1.93376 1.61535 1.85105 1.57317 1.93419 1.48061 1.68584 1.86144 1.32636 1.00423 1.30007 1.08519 1.20904 0.94798 0.96295 0.92769 1.21216 0.98822 0.92278 1.00105 1.16109 0.94364 0.85220 1.04740 1.25803 0.93334 0.92788 0.93473 1.81207 1.08096 1.11616 1.09041 1.21114 0.93659 0.96704 1.00445 1.19392 0.95697 0.91624 0.91890 1.21909 0.90746 1.05693 1.04724 0.92703 0.94321 0.94204 0.94957 0.88611 0.87416 0.93254 0.91843 0.83529 0.84919 0.84957 0.88746 0.90685 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.12 -2.34 5.67 -26.73 -0.15 -2.49 16 3 C 0.12 2.45 3.24 -4.04 -0.01 2.44 16 4 N -0.82 -17.58 2.82 -59.91 -0.17 -17.74 16 5 C -0.28 -6.38 9.47 -15.06 -0.14 -6.53 16 6 H 0.11 2.59 7.50 -52.49 -0.39 2.19 16 7 C 0.05 1.05 5.13 -17.43 -0.09 0.96 16 8 N -0.83 -18.14 8.07 55.49 0.45 -17.69 16 9 Si 0.90 17.64 29.61 -169.99 -5.03 12.60 16 10 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 11 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 12 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 13 S 2.59 53.99 4.99 -107.50 -0.54 53.46 16 14 O -0.98 -21.33 14.46 -57.17 -0.83 -22.16 16 15 O -0.97 -22.54 16.06 -57.17 -0.92 -23.46 16 16 C -0.64 -11.40 5.91 -39.49 -0.23 -11.64 16 17 C -0.03 -0.46 9.53 -39.64 -0.38 -0.84 16 18 C -0.10 -1.41 9.76 -39.17 -0.38 -1.79 16 19 C 0.00 -0.01 5.73 -106.93 -0.61 -0.62 16 20 C 0.26 3.64 15.33 -22.48 -0.34 3.29 16 21 N -0.42 -6.51 18.54 41.83 0.78 -5.74 16 22 C -0.10 -1.36 9.38 -39.16 -0.37 -1.73 16 23 C 0.02 0.24 5.87 -104.68 -0.61 -0.37 16 24 C -0.17 -2.59 7.82 36.00 0.28 -2.31 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 2.12 6.42 -51.93 -0.33 1.79 16 30 H 0.11 2.24 5.65 -51.93 -0.29 1.94 16 31 H 0.05 0.90 4.14 -51.93 -0.22 0.68 16 32 H 0.27 5.63 8.31 -40.82 -0.34 5.29 16 33 H 0.15 2.22 7.32 -52.49 -0.38 1.84 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.13 1.49 8.05 -52.49 -0.42 1.06 16 36 H 0.09 1.40 6.52 -51.93 -0.34 1.06 16 37 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 38 H 0.11 1.87 4.08 -51.93 -0.21 1.66 16 LS Contribution 325.27 15.07 4.90 4.90 Total: -1.00 -26.09 325.27 -8.30 -34.38 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.26 Total: 4.96 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -2.68 Total: -23.51 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 1.05 Total: -41.18 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.74 Total: -45.62 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 53.99 SS G_CDS: -0.54 Total: 53.46 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.09 -8.30 -34.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.369 kcal (2) G-P(sol) polarization free energy of solvation -26.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds