Wall clock time and date at job start Fri Apr 10 2020 22:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 N 1.46502 * 109.47208 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99389 * 273.33053 * 4 3 2 6 6 H 1.08001 * 119.99529 * 177.08716 * 5 4 3 7 7 C 1.38817 * 120.00319 * 357.08527 * 5 4 3 8 8 N 1.31621 * 119.99475 * 23.65419 * 7 5 4 9 9 Si 1.86795 * 120.00071 * 203.65391 * 7 5 4 10 10 H 1.48502 * 109.47093 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47438 * 120.00246 * 9 7 5 12 12 H 1.48504 * 109.46815 * 240.00337 * 9 7 5 13 13 S 1.65598 * 120.00205 * 93.33407 * 4 3 2 14 14 O 1.42098 * 106.40037 * 346.33059 * 13 4 3 15 15 O 1.42108 * 106.39706 * 213.41221 * 13 4 3 16 16 C 1.76202 * 107.21919 * 99.87189 * 13 4 3 17 17 C 1.38383 * 119.84427 * 116.39781 * 16 13 4 18 18 C 1.37927 * 120.14905 * 179.97438 * 17 16 13 19 19 C 1.39655 * 119.84770 * 0.02562 * 18 17 16 20 20 C 1.43200 * 120.15198 * 180.02562 * 19 18 17 21 21 N 9.85769 * 119.54296 * 344.58277 * 2 1 3 22 22 C 1.39617 * 119.69696 * 0.27463 * 19 18 17 23 23 C 1.37970 * 119.84441 * 359.46993 * 22 19 18 24 24 C 1.50698 * 119.92478 * 180.23404 * 23 22 19 25 25 H 1.08999 * 109.47383 * 300.00181 * 1 2 3 26 26 H 1.09000 * 109.47261 * 60.00853 * 1 2 3 27 27 H 1.08999 * 109.46913 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47383 * 239.99819 * 2 1 3 29 29 H 1.09000 * 109.47261 * 119.99147 * 2 1 3 30 30 H 1.08991 * 109.47453 * 59.99545 * 3 2 1 31 31 H 1.09003 * 109.46838 * 299.99889 * 3 2 1 32 32 H 0.97005 * 119.99189 * 179.97438 * 8 7 5 33 33 H 1.07997 * 119.93070 * 359.97438 * 17 16 13 34 34 H 1.07999 * 120.07590 * 179.97438 * 18 17 16 35 35 H 1.08000 * 120.07725 * 179.72550 * 22 19 18 36 36 H 1.08999 * 109.47109 * 263.19998 * 24 23 22 37 37 H 1.09004 * 109.46800 * 23.19355 * 24 23 22 38 38 H 1.08999 * 109.47633 * 143.19812 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3735 1.1831 6 1 5.2690 1.3260 1.1805 7 6 3.4978 1.3645 2.3863 8 7 2.2456 0.9605 2.4219 9 14 4.3432 1.9258 3.9545 10 1 5.7396 2.3272 3.6476 11 1 3.6091 3.0832 4.5257 12 1 4.3535 0.8123 4.9370 13 16 4.3324 1.5262 -1.4326 14 8 3.3855 1.2634 -2.4591 15 8 5.5186 0.7639 -1.2556 16 6 4.8430 3.1994 -1.6431 17 6 6.1913 3.5097 -1.6711 18 6 6.5980 4.8172 -1.8360 19 6 5.6455 5.8292 -1.9743 20 6 6.0605 7.1889 -2.1465 21 7 6.3906 8.2675 -2.2799 22 6 4.2869 5.5098 -1.9388 23 6 3.8941 4.1969 -1.7785 24 6 2.4281 3.8495 -1.7452 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8898 31 1 1.6766 1.9563 -0.8900 32 1 1.7620 0.9539 3.2628 33 1 6.9269 2.7262 -1.5636 34 1 7.6506 5.0581 -1.8573 35 1 3.5451 6.2881 -2.0408 36 1 2.0960 3.7739 -0.7098 37 1 1.8587 4.6277 -2.2535 38 1 2.2692 2.8957 -2.2483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092367495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:01:52 Heat of formation + Delta-G solvation = -13.906700 kcal Electronic energy + Delta-G solvation = -23948.672611 eV Core-core repulsion = 20497.725284 eV Total energy + Delta-G solvation = -3450.947327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.61790 -38.35843 -37.92491 -37.70087 -36.61933 -34.04908 -33.75550 -32.76902 -32.53890 -28.34539 -27.31286 -25.56381 -25.19374 -23.09844 -22.06574 -20.41245 -19.54806 -19.29171 -18.29692 -18.17361 -17.06878 -16.33267 -15.93290 -15.55967 -15.38889 -15.33308 -15.16787 -15.04198 -14.65590 -14.33960 -14.16351 -14.04801 -13.82691 -13.57220 -13.46928 -13.33617 -12.95585 -12.88310 -12.78019 -12.58630 -12.47440 -12.25383 -12.10795 -12.05093 -11.99643 -11.72114 -11.45532 -11.11630 -10.64489 -10.33562 -9.85788 -9.74735 -8.05204 -5.61689 -0.71458 -0.22321 0.24328 1.44160 1.50867 1.57212 1.61097 1.65693 2.31895 2.58526 2.61272 2.75852 2.95460 3.22057 3.54873 3.74789 3.85326 4.11561 4.32045 4.45148 4.46754 4.57904 4.64956 4.77443 4.79420 4.83204 4.85669 4.96340 5.08849 5.19218 5.26492 5.28747 5.38773 5.43181 5.57358 5.68455 5.70185 5.99884 6.15776 6.24670 6.68383 7.10447 7.47507 8.87075 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.005990 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.731194 B = 4673.349221 C = 5419.879753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 C 0.129 3.871 4 N -0.846 5.846 5 C -0.327 4.327 6 H 0.098 0.902 7 C 0.018 3.982 8 N -0.861 5.861 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.277 1.277 12 H -0.287 1.287 13 S 2.644 3.356 14 O -0.992 6.992 15 O -1.000 7.000 16 C -0.659 4.659 17 C -0.038 4.038 18 C -0.091 4.091 19 C 0.013 3.987 20 C 0.281 3.719 21 N -0.442 5.442 22 C -0.088 4.088 23 C 0.010 3.990 24 C -0.180 4.180 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.017 0.983 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.267 0.733 33 H 0.150 0.850 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 6.176 -4.830 7.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C 0.004 3.996 4 N -0.677 5.677 5 C -0.460 4.460 6 H 0.115 0.885 7 C -0.187 4.187 8 N -0.501 5.501 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.214 1.214 13 S 2.739 3.261 14 O -0.982 6.982 15 O -0.991 6.991 16 C -0.745 4.745 17 C -0.057 4.057 18 C -0.112 4.112 19 C 0.009 3.991 20 C -0.034 4.034 21 N -0.117 5.117 22 C -0.109 4.109 23 C 0.009 3.991 24 C -0.236 4.236 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.168 0.832 34 H 0.185 0.815 35 H 0.185 0.815 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.169 7.180 -5.579 9.095 hybrid contribution 0.535 0.195 1.192 1.321 sum 0.366 7.375 -4.388 8.589 Atomic orbital electron populations 1.21511 0.94730 1.01063 1.01339 1.21798 0.96315 0.98218 0.99688 1.21769 0.78149 0.97582 1.02110 1.53114 1.13577 1.81243 1.19731 1.19358 0.92159 1.51035 0.83456 0.88460 1.25536 0.96450 0.96488 1.00268 1.70283 1.11242 1.41570 1.27016 0.85540 0.79062 0.78149 0.79571 1.19480 1.20312 1.21383 1.03925 0.72530 0.76518 0.73142 1.93406 1.61978 1.85619 1.57159 1.93415 1.49364 1.69717 1.86562 1.31718 1.02308 1.27013 1.13410 1.21034 0.93865 0.97864 0.92911 1.21473 1.00678 0.90840 0.98228 1.16183 0.94489 0.85119 1.03259 1.25543 0.92699 0.92312 0.92847 1.81262 1.08736 1.12240 1.09507 1.21401 0.94521 0.96347 0.98616 1.19577 0.95786 0.92196 0.91579 1.21950 0.90629 1.06068 1.04937 0.92670 0.92650 0.93052 0.96431 0.91285 0.87984 0.91550 0.92260 0.83229 0.81543 0.81529 0.88900 0.86850 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 9.91 71.98 0.71 -3.54 16 2 C -0.12 -4.99 5.67 30.59 0.17 -4.82 16 3 C 0.13 5.28 3.24 86.38 0.28 5.56 16 4 N -0.85 -37.44 2.82 -343.45 -0.97 -38.41 16 5 C -0.33 -15.63 9.47 84.03 0.80 -14.83 16 6 H 0.10 4.74 7.50 -2.91 -0.02 4.72 16 7 C 0.02 0.82 5.13 84.86 0.44 1.26 16 8 N -0.86 -39.75 8.07 21.65 0.17 -39.57 16 9 Si 0.95 37.85 29.61 68.60 2.03 39.88 16 10 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 12 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 13 S 2.64 110.46 4.99 -56.49 -0.28 110.18 16 14 O -0.99 -42.45 14.46 -128.00 -1.85 -44.30 16 15 O -1.00 -47.00 16.06 -128.00 -2.06 -49.05 16 16 C -0.66 -22.39 5.91 22.33 0.13 -22.26 16 17 C -0.04 -1.11 9.53 22.23 0.21 -0.90 16 18 C -0.09 -2.12 9.76 22.54 0.22 -1.90 16 19 C 0.01 0.30 5.73 -21.36 -0.12 0.18 16 20 C 0.28 6.58 15.33 88.33 1.35 7.93 16 21 N -0.44 -11.90 18.54 19.00 0.35 -11.55 16 22 C -0.09 -2.04 9.38 22.54 0.21 -1.82 16 23 C 0.01 0.29 5.87 -19.90 -0.12 0.17 16 24 C -0.18 -4.84 7.82 71.24 0.56 -4.28 16 25 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 3.24 6.42 -2.39 -0.02 3.23 16 30 H 0.10 4.39 5.65 -2.39 -0.01 4.37 16 31 H 0.07 2.41 4.14 -2.39 -0.01 2.40 16 32 H 0.27 11.74 8.31 -92.70 -0.77 10.97 16 33 H 0.15 4.31 7.32 -2.91 -0.02 4.29 16 34 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 35 H 0.17 2.76 8.05 -2.91 -0.02 2.74 16 36 H 0.09 2.59 6.52 -2.39 -0.02 2.57 16 37 H 0.11 2.15 8.03 -2.39 -0.02 2.13 16 38 H 0.09 2.92 4.08 -2.39 -0.01 2.91 16 Total: -1.00 -57.74 325.27 3.35 -54.40 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 1.10 Total: 17.70 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 4.85 Total: -39.26 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -0.44 Total: -89.54 kcal Atomic # 8 Polarization: -89.45 SS G_CDS: -3.91 Total: -93.36 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Atomic # 16 Polarization: 110.46 SS G_CDS: -0.28 Total: 110.18 kcal Total: -57.74 3.35 -54.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.491 kcal (2) G-P(sol) polarization free energy of solvation -57.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds